Plant FIBer expression Database

External link	JGI Phytozome v13 [genome browser] Popgenie AspWood
Symbol
Arabidopsis homologues Show only best Show top 10	Locus ID BLAST score/e-value TF class Alias TAIR10 short description AT4G27950 162 / 2e-47 AP2_ERF CRF4 cytokinin response factor 4 (.1) AT2G46310 159 / 6e-47 AP2_ERF CRF5 cytokinin response factor 5 (.1) AT3G61630 150 / 3e-43 AP2_ERF CRF6 cytokinin response factor 6 (.1) AT4G23750 141 / 3e-39 AP2_ERF TMO3, CRF2 TARGET OF MONOPTEROS 3, cytokinin response factor 2 (.1.2) AT4G11140 132 / 1e-36 AP2_ERF CRF1 cytokinin response factor 1 (.1) AT5G53290 114 / 2e-29 AP2_ERF CRF3 cytokinin response factor 3 (.1) AT1G71130 97 / 3e-24 AP2_ERF CRF8 cytokinin response factor 8, Integrase-type DNA-binding superfamily protein (.1) AT1G22985 93 / 8e-23 AP2_ERF CRF7 cytokinin response factor 7, Integrase-type DNA-binding superfamily protein (.1) AT1G28370 93 / 9e-23 AP2_ERF AtERF11 ERF domain protein 11 (.1) AT5G13330 93 / 2e-22 AP2_ERF RAP2.6L related to AP2 6l (.1)
Paralogs Show only best Show top 10	Gene ID BLAST score/e-value At best hit BLAST score/e-value TAIR10 short description Potri.014G094500 [exp] 483 / 2e-173 AT2G46310 163 / 3e-48 cytokinin response factor 5 (.1) Potri.012G032900 [exp] 170 / 3e-50 AT4G27950 214 / 6e-67 cytokinin response factor 4 (.1) Potri.001G094800 [exp] 161 / 4e-47 AT4G23750 177 / 2e-52 TARGET OF MONOPTEROS 3, cytokinin response factor 2 (.1.2) Potri.015G023200 [exp] 159 / 8e-46 AT4G27950 211 / 9e-66 cytokinin response factor 4 (.1) Potri.003G136300 [exp] 157 / 2e-45 AT4G11140 160 / 1e-46 cytokinin response factor 1 (.1) Potri.019G131300 [exp] 129 / 6e-35 AT4G27950 139 / 2e-38 cytokinin response factor 4 (.1) Potri.013G158500 [exp] 123 / 1e-32 AT4G27950 124 / 1e-32 cytokinin response factor 4 (.1) Potri.004G047500 [exp] 97 / 3e-24 AT1G28360 157 / 3e-49 ERF domain protein 12 (.1) Potri.011G056900 [exp] 97 / 3e-24 AT1G28360 149 / 6e-46 ERF domain protein 12 (.1)
Flax homologues Show only best Show top 10	Locus ID BLAST score/e-value At best hit BLAST score/e-value TAIR10 short description Lus10027573 [exp] 159 / 9e-46 AT4G27950 209 / 1e-64 cytokinin response factor 4 (.1) Lus10039324 [exp] 155 / 2e-44 AT4G27950 210 / 8e-65 cytokinin response factor 4 (.1) Lus10018756 [exp] 155 / 4e-42 AT1G64280 506 / 2e-170 SALICYLIC ACID INSENSITIVE 1, NON-INDUCIBLE IMMUNITY 1, ARABIDOPSIS NONEXPRESSER OF PR GENES 1, regulatory protein (NPR1) (.1) Lus10017550 [exp] 144 / 5e-41 AT4G23750 172 / 2e-51 TARGET OF MONOPTEROS 3, cytokinin response factor 2 (.1.2) Lus10003037 [exp] 142 / 6e-41 AT2G46310 122 / 8e-34 cytokinin response factor 5 (.1) Lus10032353 [exp] 141 / 2e-39 AT4G23750 207 / 2e-64 TARGET OF MONOPTEROS 3, cytokinin response factor 2 (.1.2) Lus10033938 [exp] 134 / 1e-36 AT4G23750 201 / 6e-62 TARGET OF MONOPTEROS 3, cytokinin response factor 2 (.1.2) Lus10005149 [exp] 116 / 1e-31 AT4G27950 106 / 6e-28 cytokinin response factor 4 (.1) Lus10014054 [exp] 99 / 3e-24 AT4G34410 139 / 4e-40 redox responsive transcription factor 1 (.1) Lus10016827 [exp] 97 / 4e-23 AT3G16770 183 / 4e-57 RELATED TO AP2 3, ETHYLENE RESPONSE FACTOR 72, ethylene-responsive element binding protein (.1)
PFAM info	Clan ID Clan name Pfam ID Pfam name Pfam description CL0081 [poplar] [flax] MBD-like PF00847 [poplar] [flax] AP2 AP2 domain
Representative CDS sequence Show only first row Show all	>Potri.002G167400.2 pacid=42779818 polypeptide=Potri.002G167400.2.p locus=Potri.002G167400 ID=Potri.002G167400.2.v4.1 annot-version=v4.1 ATGAATCGCTTTTCTACCAAGTACACAGAGCATAAAACTGTGACCAACAAGCTGGTGAAATGGGAGGACTCAAAAGCCACAAGAATAGTACGGATTTCAG TTACCGATGGCAATGCTACGGACTCGTCTGGTGATGAAAAGGAGGAATCGAAAAGGCATCATCCAAGAGTCAAAAAACATATAAACGAGATAAGAATAAC AAGTTGTGGGAGCGACAGAGCAGCAGAAGATGCAAAAAAATCTTCAAAAGTGGTAAGCCGGCAACAAGTTGTGAAAAAAATTTCAAGGGATCAGTGTTCT TATCCAGGGGGGAAAAGGTATCGTGGTGTGAGACAAAGGCCATGGGGGAGGTGGGCAGCAGAGATCAGAGACCCTTATAGGAGAACCCGGCTATGGTTAG GGACTTATGATACAGCAGAGGAGGCAGCCATGGTTTATGATCAGGCTGCTATTCGTATTAAAGGACCTGATGCACAAACCAATTTCACACAACCTCCGGT GAGCAAACAACATGCCCCAGATGTTGATATTAACGTTAACATTTCTGGGTATGAGTCTGGTAAAGAATCTCATAATAGTCTGTGTTCTCCAACTTCTGTG CTTAGATTTCAATCTACAGAGGAACCGGGGCCAGAGTCACAGGTTGCCGTACAGAGTGATTGTTGCTGGAGGATACAAACGCAAGAAGAGGTTGTTCAAG AAGAAATAATAAAGGTCGGTGAGGATGATGAGTGTTTGGTTACGGATCCTTTGTGTTTGAAAGAGTTTTGGGATTTTGAAAATCCTGCTCCGATTTTTTT TGAGGAGTGTAGTGTACCGGATACTGTTTTGAGAGAAGATTATGCTGATATCTCGGTACATTTGGATGGTGATTTCGGCTCCTGTTTATGGGATGTCGAC AAGTACTTTGAGGCTTAA
AA sequence Show only first row Show all	>Potri.002G167400.2 pacid=42779818 polypeptide=Potri.002G167400.2.p locus=Potri.002G167400 ID=Potri.002G167400.2.v4.1 annot-version=v4.1 MNRFSTKYTEHKTVTNKLVKWEDSKATRIVRISVTDGNATDSSGDEKEESKRHHPRVKKHINEIRITSCGSDRAAEDAKKSSKVVSRQQVVKKISRDQCS YPGGKRYRGVRQRPWGRWAAEIRDPYRRTRLWLGTYDTAEEAAMVYDQAAIRIKGPDAQTNFTQPPVSKQHAPDVDINVNISGYESGKESHNSLCSPTSV LRFQSTEEPGPESQVAVQSDCCWRIQTQEEVVQEEIIKVGEDDECLVTDPLCLKEFWDFENPAPIFFEECSVPDTVLREDYADISVHLDGDFGSCLWDVD KYFEA

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DESeq2's median of ratios [POPLAR]

Mapped by: StringTie Salmon Order by: Tissue Experiment Show only core collection Show again Show schematic diagram

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Coexpressed genes

Compare expression of checked genes Schematic diagram [FLAX] Schematic diagram [POPLAR]

*If you select 4 or less genes and then press "compare expression", expression will be shown as a graph. If you select more than 4 genes, expresion will be shown as a heat map.
*Color represents relative expression level among samples for each gene.

At best	At TF class	At alias	At description		Locus	MR	r	Symbol	NWA:WT	NWB:WT	NWA:OE-ARK2	NWB:OE-ARK2	NWA:miRNA-ARK2	NWB:miRNA-ARK2	NW 0hr	WT H20	WT-NW	TUA1dEY NW	TUA1dEY+TUB15 NW	TUA1dY+TUB9 NW	Pde NW	NWA:WT GA	NWBWT GA	TW:WT	TW:WT GA	NWA:OE-ARK2 GA	NWB:OE-ARK2 GA	TW:OE-ARK2	TW:OE-ARK2 GA	NWA:miRNA-ARK2 GA	NWB:miRNA-ARK2 GA	TW:miRNA-ARK2	TW:miRNA-ARK2 GA	TW 2hr	TW 8hr	TW 24hr	TW 48hr	TW 96hr	TW 336hr	WT ACC	35S::etr1-1 H20	35S::etr1-1 ACC	LMX5::etr1-1 H20	LMX5::etr1-1 ACC	WT-TW	TUA1dEY TW	TUA1dEY+TUB15 TW	TUA1dY+TUB9 TW	Pde TW	OW:WT	OW:WT GA	OW:OE-ARK2	OW:OE-ARK2 GA	OW:miRNA-ARK2	OW:miRNA-ARK2 GA	OW 2hr	OW 8hr	OW 24hr	OW 48hr	OW 96hr	OW 336hr	Root CTR	Root LongCold	Root LongDrougt	Root LongHeat	Root LongSalt	Root ShortCold	Root ShortDrougt	Root ShortHeat	Root ShortSalt	Ptr root	Leaf CTR	Leaf LongCold	Leaf LongDrougt	Leaf LongHeat	Leaf LongSalt	Leaf ShortCold	Leaf ShortDrougt	Leaf ShortHeat	Leaf ShortSalt	Ptr leaf	Stem CTR	Stem LongCold	Stem LongDrougt	Stem LongHeat	Stem LongSalt	Stem ShortCold	Stem ShortDrougt	Stem ShortHeat	Stem ShortSalt	Ptr shoot	Ptr xylem	Ptr phloem	Ptr fiber	Ptr vessel	Ptr fiber vessel ray
AT4G27950	AP2_ERF	CRF4	cytokinin response factor 4 (....		Potri.002G167400 [exp]	0	1
AT3G48800			Sterile alpha motif (SAM) doma...		Potri.003G164600 [exp]	1.41	0.8914
					Potri.001G371500 [exp]	1.41	0.8987
AT3G48070			RING/U-box superfamily protein...		Potri.012G074500 [exp]	1.73	0.8854
AT5G63840		PSL5, RSW3	RADIAL SWELLING 3, PRIORITY IN...		Potri.005G069000 [exp]	4.47	0.8840
AT1G32260			unknown protein		Potri.003G095600 [exp]	8.12	0.8707
AT3G04800		ATTIM23-3	translocase inner membrane sub...		Potri.013G039200 [exp]	12.36	0.8525
AT3G12350			F-box family protein (.1.2)		Potri.002G117900 [exp]	12.36	0.8179
AT5G04010			F-box family protein (.1)		Potri.004G077301 [exp]	13.78	0.8461
AT1G53460			unknown protein		Potri.001G376900 [exp]	14.96	0.8621
					Potri.011G062950 [exp]	15.74	0.8544

Compare expression of checked genes

Potri.002G167400 coexpression network

*The number of genes in the network is adjusted within 50 genes.
*Gene name represents symbol(s) of closest Arabidopsis gene if symbol(s) for the gene itself doesn't exist.
*Circle diameter represents the number of connection with other genes within this network.
*Color for gene name represents subnetwork based on the result of network clustering.