Plant FIBer expression Database

External link	JGI Phytozome v13 [genome browser] Popgenie AspWood
Symbol
Arabidopsis homologues Show only best Show top 10	Locus ID BLAST score/e-value TF class Alias TAIR10 short description AT1G22640 207 / 2e-66 MYB AtMYB3 ARABIDOPSIS THALIANA MYB DOMAIN PROTEIN 3, myb domain protein 3 (.1) AT3G13540 207 / 2e-66 MYB ATMYB5, ATM2 myb domain protein 5 (.1) AT4G09460 206 / 3e-66 MYB ATMYB6, ATMYB8 myb domain protein 6 (.1) AT2G16720 205 / 3e-65 MYB AtY49, AtMYB7 ARABIDOPSIS THALIANA MYB DOMAIN PROTEIN 7, myb domain protein 7 (.1) AT4G38620 204 / 1e-64 MYB AtMYB4 myb domain protein 4 (.1) AT3G61250 201 / 2e-63 MYB LMI2, ATMYB17 LATE MERISTEM IDENTITY2, myb domain protein 17 (.1) AT1G35515 198 / 3e-63 MYB MYB8, HOS10 high response to osmotic stress 10 (.1) AT5G49330 202 / 5e-63 MYB PFG3, ATMYB111 PRODUCTION OF FLAVONOL GLYCOSIDES 3, ARABIDOPSIS MYB DOMAIN PROTEIN 111, myb domain protein 111 (.1) AT3G23250 198 / 3e-62 MYB ATMYB15, ATY19 myb domain protein 15 (.1.2) AT4G34990 196 / 1e-61 MYB ATMYB32 myb domain protein 32 (.1)
Paralogs Show only best Show top 10	Gene ID BLAST score/e-value At best hit BLAST score/e-value TAIR10 short description Potri.014G100800 [exp] 405 / 4e-144 AT2G16720 207 / 3e-66 ARABIDOPSIS THALIANA MYB DOMAIN PROTEIN 7, myb domain protein 7 (.1) Potri.003G144300 [exp] 261 / 4e-87 AT1G22640 197 / 1e-62 ARABIDOPSIS THALIANA MYB DOMAIN PROTEIN 3, myb domain protein 3 (.1) Potri.003G144200 [exp] 259 / 2e-86 AT5G49330 205 / 2e-64 PRODUCTION OF FLAVONOL GLYCOSIDES 3, ARABIDOPSIS MYB DOMAIN PROTEIN 111, myb domain protein 111 (.1) Potri.001G086700 [exp] 256 / 3e-85 AT5G49330 203 / 6e-64 PRODUCTION OF FLAVONOL GLYCOSIDES 3, ARABIDOPSIS MYB DOMAIN PROTEIN 111, myb domain protein 111 (.1) Potri.003G219900 [exp] 225 / 3e-72 AT3G13540 243 / 1e-79 myb domain protein 5 (.1) Potri.013G056500 [exp] 219 / 2e-70 AT3G13540 236 / 4e-77 myb domain protein 5 (.1) Potri.013G056400 [exp] 219 / 2e-70 AT3G13540 226 / 2e-73 myb domain protein 5 (.1) Potri.001G005100 [exp] 219 / 4e-70 AT3G13540 247 / 1e-81 myb domain protein 5 (.1) Potri.019G036400 [exp] 216 / 7e-69 AT3G13540 236 / 3e-77 myb domain protein 5 (.1)
Flax homologues Show only best Show top 10	Locus ID BLAST score/e-value At best hit BLAST score/e-value TAIR10 short description Lus10000470 [exp] 208 / 4e-66 AT2G16720 196 / 2e-61 ARABIDOPSIS THALIANA MYB DOMAIN PROTEIN 7, myb domain protein 7 (.1) Lus10033438 [exp] 208 / 6e-66 AT1G22640 194 / 2e-61 ARABIDOPSIS THALIANA MYB DOMAIN PROTEIN 3, myb domain protein 3 (.1) Lus10009448 [exp] 206 / 1e-65 AT4G09460 290 / 2e-99 myb domain protein 6 (.1) Lus10000411 [exp] 206 / 2e-65 AT4G09460 300 / 5e-103 myb domain protein 6 (.1) Lus10016948 [exp] 205 / 4e-65 AT4G09460 301 / 1e-103 myb domain protein 6 (.1) Lus10001548 [exp] 205 / 4e-65 AT4G09460 291 / 2e-99 myb domain protein 6 (.1) Lus10039173 [exp] 203 / 2e-64 AT3G13540 244 / 3e-81 myb domain protein 5 (.1) Lus10028435 [exp] 199 / 1e-63 AT2G16720 246 / 2e-82 ARABIDOPSIS THALIANA MYB DOMAIN PROTEIN 7, myb domain protein 7 (.1) Lus10030378 [exp] 202 / 2e-63 AT3G61250 341 / 8e-118 LATE MERISTEM IDENTITY2, myb domain protein 17 (.1) Lus10013762 [exp] 200 / 4e-63 AT3G13540 241 / 1e-79 myb domain protein 5 (.1)
PFAM info	Clan ID Clan name Pfam ID Pfam name Pfam description CL0123 [poplar] [flax] HTH PF00249 [poplar] [flax] Myb_DNA-binding Myb-like DNA-binding domain
Representative CDS sequence Show only first row Show all	>Potri.002G173900.1 pacid=42778646 polypeptide=Potri.002G173900.1.p locus=Potri.002G173900 ID=Potri.002G173900.1.v4.1 annot-version=v4.1 ATGGGAAGGGCTCCTTGTTGCTCTAAGGTGGGTTTGCGTAGAGGACCATGGACTCCCAGAGAAGATGCATTGCTTACCGAGTATATCCAAGCTCACGGCG AGGGCCATTGGAGGTCTTTGCCTAAAAAATCTGGTCTCCTCAGATGTGGAAAAAGTTGTAGGCTAAGATGGATGAATTATTTACGACCAGACATCAAGAG AGGGAATATAACTCCTGACGAGGATGATCTCATTATTAGAATGCACTCCCTCCTCGGTAACCGGTGGTCTCTCATTGCTGGAAGACTTCCAGGTCGAACC GATAACGAGATCAAGAATCATTGGAACACCCATCTCAGCAAGAGACTTAGAAGCCAAGGAACCGACCCCAACACCCACAAAAAGTTAGCAGAACCAGGAA AACGTGAAGTCAGAAGAAGGACAAGTAACAGCGACAAAAACACCAGCAACAAGAAACAGAGCAAGAGCAAGGCTAAACCAGTGCCAGCTGAAAAGCATAA GGTCCACCTCCCTAAGGCTGTTAGGTTTGCTTCTTTATCCTTGCCAAGAAATGACAGTTTTGCAAGCAGTACAACTACTAGCCTGTCTCCAAGCCAAGGA AGGGATCAAGGGTATTGTTTCGGTACAGAACTTGCAGTGGATGTTTCTTGGAGTAATTTTAAGGATTGTGATAATGGGGTTGCCTTTTTTGTTGGAGATG TTGATCTTGATAATGGTTCAGATCTTGAATGCCAATCTCTTCTGCCTACGACAGACACCTTAGAGAAGCTATATGAGGAGTATCTTCAGGTCCTGAACAC AAATGATCATCAAGATCAAGTAGAATTAAACTCCTTCGCCGAGTCACTGCTGGTATGA
AA sequence Show only first row Show all	>Potri.002G173900.1 pacid=42778646 polypeptide=Potri.002G173900.1.p locus=Potri.002G173900 ID=Potri.002G173900.1.v4.1 annot-version=v4.1 MGRAPCCSKVGLRRGPWTPREDALLTEYIQAHGEGHWRSLPKKSGLLRCGKSCRLRWMNYLRPDIKRGNITPDEDDLIIRMHSLLGNRWSLIAGRLPGRT DNEIKNHWNTHLSKRLRSQGTDPNTHKKLAEPGKREVRRRTSNSDKNTSNKKQSKSKAKPVPAEKHKVHLPKAVRFASLSLPRNDSFASSTTTSLSPSQG RDQGYCFGTELAVDVSWSNFKDCDNGVAFFVGDVDLDNGSDLECQSLLPTTDTLEKLYEEYLQVLNTNDHQDQVELNSFAESLLV

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DESeq2's median of ratios [POPLAR]

Mapped by: StringTie Salmon Order by: Tissue Experiment Show only core collection Show again Show schematic diagram

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Coexpressed genes

Compare expression of checked genes Schematic diagram [FLAX] Schematic diagram [POPLAR]

*If you select 4 or less genes and then press "compare expression", expression will be shown as a graph. If you select more than 4 genes, expresion will be shown as a heat map.
*Color represents relative expression level among samples for each gene.

At best	At TF class	At alias	At description		Locus	MR	r	Symbol	NWA:WT	NWB:WT	NWA:OE-ARK2	NWB:OE-ARK2	NWA:miRNA-ARK2	NWB:miRNA-ARK2	NW 0hr	WT H20	WT-NW	TUA1dEY NW	TUA1dEY+TUB15 NW	TUA1dY+TUB9 NW	Pde NW	NWA:WT GA	NWBWT GA	TW:WT	TW:WT GA	NWA:OE-ARK2 GA	NWB:OE-ARK2 GA	TW:OE-ARK2	TW:OE-ARK2 GA	NWA:miRNA-ARK2 GA	NWB:miRNA-ARK2 GA	TW:miRNA-ARK2	TW:miRNA-ARK2 GA	TW 2hr	TW 8hr	TW 24hr	TW 48hr	TW 96hr	TW 336hr	WT ACC	35S::etr1-1 H20	35S::etr1-1 ACC	LMX5::etr1-1 H20	LMX5::etr1-1 ACC	WT-TW	TUA1dEY TW	TUA1dEY+TUB15 TW	TUA1dY+TUB9 TW	Pde TW	OW:WT	OW:WT GA	OW:OE-ARK2	OW:OE-ARK2 GA	OW:miRNA-ARK2	OW:miRNA-ARK2 GA	OW 2hr	OW 8hr	OW 24hr	OW 48hr	OW 96hr	OW 336hr	Root CTR	Root LongCold	Root LongDrougt	Root LongHeat	Root LongSalt	Root ShortCold	Root ShortDrougt	Root ShortHeat	Root ShortSalt	Ptr root	Leaf CTR	Leaf LongCold	Leaf LongDrougt	Leaf LongHeat	Leaf LongSalt	Leaf ShortCold	Leaf ShortDrougt	Leaf ShortHeat	Leaf ShortSalt	Ptr leaf	Stem CTR	Stem LongCold	Stem LongDrougt	Stem LongHeat	Stem LongSalt	Stem ShortCold	Stem ShortDrougt	Stem ShortHeat	Stem ShortSalt	Ptr shoot	Ptr xylem	Ptr phloem	Ptr fiber	Ptr vessel	Ptr fiber vessel ray
AT3G13540	MYB	ATMYB5, ATM2	myb domain protein 5 (.1)		Potri.002G173900 [exp]	0	1
AT4G01970		RS4, ATSTS	raffinose synthase 4, stachyos...		Potri.014G118400 [exp]	4.79	0.8666
AT3G45850			P-loop containing nucleoside t...		Potri.006G215932 [exp]	5.83	0.8130
AT4G09820	bHLH	BHLH42, TT8, bH...	TRANSPARENT TESTA 8, basic hel...		Potri.002G054100 [exp]	7.48	0.8341
AT4G22165			F-box family protein with a do...		Potri.004G137700 [exp]	7.74	0.8491
AT2G28690			Protein of unknown function (D...		Potri.001G235200 [exp]	9.74	0.8386
AT5G05340			Peroxidase superfamily protein...		Potri.014G143200 [exp]	10.67	0.8452	Pt-PRX1.11
AT2G42560			late embryogenesis abundant do...		Potri.013G118600 [exp]	11.31	0.8429
AT1G21695			hydroxyproline-rich glycoprote...		Potri.005G181200 [exp]	13.85	0.8361
AT4G21440	MYB	ATMYB102, ATM4	A. THALIANA MYB 4, MYB-like 10...		Potri.004G033100 [exp]	16.30	0.8358	MYB.53
AT3G11930			Adenine nucleotide alpha hydro...		Potri.016G064000 [exp]	16.73	0.8302

Compare expression of checked genes

Potri.002G173900 coexpression network

*The number of genes in the network is adjusted within 50 genes.
*Gene name represents symbol(s) of closest Arabidopsis gene if symbol(s) for the gene itself doesn't exist.
*Circle diameter represents the number of connection with other genes within this network.
*Color for gene name represents subnetwork based on the result of network clustering.