Plant FIBer expression Database

External link	JGI Phytozome v13 [genome browser] Popgenie AspWood
Symbol
Arabidopsis homologues Show only best Show top 10	Locus ID BLAST score/e-value TF class Alias TAIR10 short description AT2G46620 627 / 0 P-loop containing nucleoside triphosphate hydrolases superfamily protein (.1) AT3G28580 268 / 4e-84 P-loop containing nucleoside triphosphate hydrolases superfamily protein (.1) AT5G57480 265 / 2e-82 P-loop containing nucleoside triphosphate hydrolases superfamily protein (.1) AT4G25835 257 / 1e-79 P-loop containing nucleoside triphosphate hydrolases superfamily protein (.1) AT3G50940 251 / 6e-78 P-loop containing nucleoside triphosphate hydrolases superfamily protein (.1) AT5G40010 251 / 3e-77 ASD, AATP1 ATPase-in-Seed-Development, AAA-ATPase 1 (.1) AT5G17760 246 / 1e-75 P-loop containing nucleoside triphosphate hydrolases superfamily protein (.1.2) AT3G28510 246 / 2e-75 P-loop containing nucleoside triphosphate hydrolases superfamily protein (.1) AT3G28540 243 / 2e-74 P-loop containing nucleoside triphosphate hydrolases superfamily protein (.1.2) AT5G17730 242 / 2e-74 P-loop containing nucleoside triphosphate hydrolases superfamily protein (.1)
Paralogs Show only best Show top 10	Gene ID BLAST score/e-value At best hit BLAST score/e-value TAIR10 short description Potri.014G102300 [exp] 841 / 0 AT2G46620 598 / 0.0 P-loop containing nucleoside triphosphate hydrolases superfamily protein (.1) Potri.012G020800 [exp] 578 / 0 AT2G46620 536 / 0.0 P-loop containing nucleoside triphosphate hydrolases superfamily protein (.1) Potri.015G007800 [exp] 572 / 0 AT2G46620 503 / 1e-175 P-loop containing nucleoside triphosphate hydrolases superfamily protein (.1) Potri.001G231200 [exp] 323 / 5e-105 AT4G25835 359 / 1e-118 P-loop containing nucleoside triphosphate hydrolases superfamily protein (.1) Potri.009G024400 [exp] 323 / 7e-105 AT4G25835 362 / 4e-120 P-loop containing nucleoside triphosphate hydrolases superfamily protein (.1) Potri.006G169000 [exp] 265 / 2e-82 AT5G57480 776 / 0.0 P-loop containing nucleoside triphosphate hydrolases superfamily protein (.1) Potri.018G093600 [exp] 258 / 4e-80 AT5G57480 743 / 0.0 P-loop containing nucleoside triphosphate hydrolases superfamily protein (.1) Potri.002G032700 [exp] 252 / 2e-78 AT3G50930 437 / 1e-149 cytochrome BC1 synthesis (.1) Potri.007G020500 [exp] 251 / 6e-78 AT2G18193 511 / 1e-179 P-loop containing nucleoside triphosphate hydrolases superfamily protein (.1)
Flax homologues Show only best Show top 10	Locus ID BLAST score/e-value At best hit BLAST score/e-value TAIR10 short description Lus10030220 [exp] 657 / 0 AT2G46620 603 / 0.0 P-loop containing nucleoside triphosphate hydrolases superfamily protein (.1) Lus10005991 [exp] 650 / 0 AT2G46620 598 / 0.0 P-loop containing nucleoside triphosphate hydrolases superfamily protein (.1) Lus10008834 [exp] 494 / 4e-172 AT2G46620 473 / 2e-163 P-loop containing nucleoside triphosphate hydrolases superfamily protein (.1) Lus10022362 [exp] 379 / 2e-129 AT2G46620 362 / 8e-123 P-loop containing nucleoside triphosphate hydrolases superfamily protein (.1) Lus10035073 [exp] 300 / 2e-99 AT2G46620 280 / 7e-92 P-loop containing nucleoside triphosphate hydrolases superfamily protein (.1) Lus10014284 [exp] 256 / 2e-79 AT3G50930 535 / 0.0 cytochrome BC1 synthesis (.1) Lus10014496 [exp] 247 / 1e-75 AT5G40010 577 / 0.0 ATPase-in-Seed-Development, AAA-ATPase 1 (.1) Lus10041918 [exp] 247 / 3e-75 AT3G50930 383 / 2e-126 cytochrome BC1 synthesis (.1) Lus10025989 [exp] 241 / 4e-75 AT3G50930 445 / 1e-153 cytochrome BC1 synthesis (.1) Lus10015354 [exp] 244 / 7e-75 AT5G40010 598 / 0.0 ATPase-in-Seed-Development, AAA-ATPase 1 (.1)
PFAM info	Clan ID Clan name Pfam ID Pfam name Pfam description CL0023 [poplar] [flax] P-loop_NTPase PF00004 [poplar] [flax] AAA ATPase family associated with various cellular activities (AAA) CL0023 [poplar] [flax] PF14363 [poplar] [flax] AAA_assoc Domain associated at C-terminal with AAA
Representative CDS sequence Show only first row Show all	>Potri.002G175600.1 pacid=42776746 polypeptide=Potri.002G175600.1.p locus=Potri.002G175600 ID=Potri.002G175600.1.v4.1 annot-version=v4.1 ATGAAATTTCTCTATGCCCCAATCTTACTTTTGTTCGTAATACTCAGTCTACTGTTTCTGCTTCGTGTCCTTTTGTTCAAAACTGGGCTAATTTACATCA CCAAAAAATGGTGGAGGTCAATAGAAGATTGTTTCCATGTCTATCAATTCTTCAAAGTCCCTGAATTCAATGAGAACATGCAAAAAAATCATCTTTATTG CGAAGTCTCTATTTATCTCAGCTCTATAGCTTCCATCGAAGACTCTGATTTCATCAATCTATTCACCGGCAAAAAACCCCACGACATCGTCCTTCATCTC GATCCGAACCAGGTAATAGATGATTATTTCCTTGGCGCAAGAGTTTCTTGGATTAACGAGGAGAAAAACGATACCAATCGTTGCAGAACCTTCGTTTTGA AGATCAGAAGAGCCGATAAGCGCAAAATTCTGCGTCCTTATCTGCAGCACATCCACATAACTTCAGACGAGCTCGAGCAAAAGAAGAAAGATGTGAAGCT CTACATAAATATCGACAGTCATGAGCAAAGCAGACAGTGGAGATCCGTTCCGTTCAAACATCCGTCGACGTTCGATACAATTGCAATGGAATCTGATCTC AAGAATAAGTTGAAATCAGATCTTGAGTCGTTCCTCAAAGCCAAACATTACTACCACCGGCTGGGGCGTGCTTGGAAGCGAAGCTACTTGTTGTACGGCC CATCAGGTACTGGAAAATCCAGCTTTGTTGCGGCCATTGCTAATTTTCTTGGCTACGATGTGTATGATATTGATCTTTCAAGGGTTTTAGATGATTCGGA TATGAAAATGTTATTGTTACAGACGACATGCAAGTCAGTGATTTTGATTGAAGACCTTGATCGGTTTTTGATGGATAAATCAACGAGGGTCAGCTTGTCA GGTATTTTGAACTTCATGGATGGGGTATTAAATTCTTGCTGTGCAGACGAAAGAATCATGGTTTATACGATGAATTGTAAAGATCATGTTGATCCGGCTA TTCTTAGACCCGGTCGGATTGATGTTCATATTCATTTCCCTTTGTGTGATTTCTCTGCTTTCAAAACATTGGCTAATAATTACTTGGGTGTTAAGGATCA TAAATTGTTTCCTCAAGTAGAGGAGTTTTTTCAAACCGGGGCCAGTTTGAGCCCAGCTGAGATTGGGGAGCTTATGATTGCCAACAGGAATTCGCCTAGT CGGGCCTTGAAATCGGTCGTTACTGCTTTGCAAACGGACGGTGATGGAAGGGGGTCTTTGAACATTAGAAGACAGTGGACTGATAATTCTTCAAGGAAGT CGACTGAGGATTCAGGGGAACAGCCGGGGGTTTTTTCCAAGGAGGGTGTCAATGCCATGAAGGATATTAGAAAACTGTATGGCTTATTGAGATTGAAAAG TAGAAAAAATTCAGAGTCGTTTGATAGGATGCCGGACAGTAAGGATGGGCAATCATGTGGTTTGTGA
AA sequence Show only first row Show all	>Potri.002G175600.1 pacid=42776746 polypeptide=Potri.002G175600.1.p locus=Potri.002G175600 ID=Potri.002G175600.1.v4.1 annot-version=v4.1 MKFLYAPILLLFVILSLLFLLRVLLFKTGLIYITKKWWRSIEDCFHVYQFFKVPEFNENMQKNHLYCEVSIYLSSIASIEDSDFINLFTGKKPHDIVLHL DPNQVIDDYFLGARVSWINEEKNDTNRCRTFVLKIRRADKRKILRPYLQHIHITSDELEQKKKDVKLYINIDSHEQSRQWRSVPFKHPSTFDTIAMESDL KNKLKSDLESFLKAKHYYHRLGRAWKRSYLLYGPSGTGKSSFVAAIANFLGYDVYDIDLSRVLDDSDMKMLLLQTTCKSVILIEDLDRFLMDKSTRVSLS GILNFMDGVLNSCCADERIMVYTMNCKDHVDPAILRPGRIDVHIHFPLCDFSAFKTLANNYLGVKDHKLFPQVEEFFQTGASLSPAEIGELMIANRNSPS RALKSVVTALQTDGDGRGSLNIRRQWTDNSSRKSTEDSGEQPGVFSKEGVNAMKDIRKLYGLLRLKSRKNSESFDRMPDSKDGQSCGL

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DESeq2's median of ratios [POPLAR]

Mapped by: StringTie Salmon Order by: Tissue Experiment Show only core collection Show again Show schematic diagram

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Coexpressed genes

Compare expression of checked genes Schematic diagram [FLAX] Schematic diagram [POPLAR]

*If you select 4 or less genes and then press "compare expression", expression will be shown as a graph. If you select more than 4 genes, expresion will be shown as a heat map.
*Color represents relative expression level among samples for each gene.

At best	At TF class	At alias	At description		Locus	MR	r	Symbol	NWA:WT	NWB:WT	NWA:OE-ARK2	NWB:OE-ARK2	NWA:miRNA-ARK2	NWB:miRNA-ARK2	NW 0hr	WT H20	WT-NW	TUA1dEY NW	TUA1dEY+TUB15 NW	TUA1dY+TUB9 NW	Pde NW	NWA:WT GA	NWBWT GA	TW:WT	TW:WT GA	NWA:OE-ARK2 GA	NWB:OE-ARK2 GA	TW:OE-ARK2	TW:OE-ARK2 GA	NWA:miRNA-ARK2 GA	NWB:miRNA-ARK2 GA	TW:miRNA-ARK2	TW:miRNA-ARK2 GA	TW 2hr	TW 8hr	TW 24hr	TW 48hr	TW 96hr	TW 336hr	WT ACC	35S::etr1-1 H20	35S::etr1-1 ACC	LMX5::etr1-1 H20	LMX5::etr1-1 ACC	WT-TW	TUA1dEY TW	TUA1dEY+TUB15 TW	TUA1dY+TUB9 TW	Pde TW	OW:WT	OW:WT GA	OW:OE-ARK2	OW:OE-ARK2 GA	OW:miRNA-ARK2	OW:miRNA-ARK2 GA	OW 2hr	OW 8hr	OW 24hr	OW 48hr	OW 96hr	OW 336hr	Root CTR	Root LongCold	Root LongDrougt	Root LongHeat	Root LongSalt	Root ShortCold	Root ShortDrougt	Root ShortHeat	Root ShortSalt	Ptr root	Leaf CTR	Leaf LongCold	Leaf LongDrougt	Leaf LongHeat	Leaf LongSalt	Leaf ShortCold	Leaf ShortDrougt	Leaf ShortHeat	Leaf ShortSalt	Ptr leaf	Stem CTR	Stem LongCold	Stem LongDrougt	Stem LongHeat	Stem LongSalt	Stem ShortCold	Stem ShortDrougt	Stem ShortHeat	Stem ShortSalt	Ptr shoot	Ptr xylem	Ptr phloem	Ptr fiber	Ptr vessel	Ptr fiber vessel ray
AT2G46620			P-loop containing nucleoside t...		Potri.002G175600 [exp]	0	1
AT3G54680			proteophosphoglycan-related (....		Potri.013G072200 [exp]	2.23	0.9009
AT4G01500	B3	NGA4	NGATHA4, AP2/B3-like transcrip...		Potri.012G013700 [exp]	2.23	0.9361
AT5G49600			Protein of unknown function, D...		Potri.010G149100 [exp]	2.44	0.9112
AT2G46870	B3	NGA1	NGATHA1, AP2/B3-like transcrip...		Potri.001G452200 [exp]	2.82	0.9131
AT3G06780			glycine-rich protein (.1)		Potri.010G006600 [exp]	6.92	0.8812
AT1G35520	ARF	ARF15	auxin response factor 15 (.1)		Potri.012G012950 [exp]	8.00	0.8887
					Potri.004G104600 [exp]	8.48	0.9094
AT1G01980		ATSEC1A	FAD-binding Berberine family p...		Potri.011G158500 [exp]	8.48	0.8878
AT4G05050		UBQ11	ubiquitin 11 (.1.2.3.4)		Potri.011G026600 [exp]	13.49	0.8057	Pt-SUBI.7
AT3G01050		MUB1	membrane-anchored ubiquitin-fo...		Potri.004G124600 [exp]	13.71	0.8329

Compare expression of checked genes

Potri.002G175600 coexpression network

*The number of genes in the network is adjusted within 50 genes.
*Gene name represents symbol(s) of closest Arabidopsis gene if symbol(s) for the gene itself doesn't exist.
*Circle diameter represents the number of connection with other genes within this network.
*Color for gene name represents subnetwork based on the result of network clustering.