Plant FIBer expression Database

External link	JGI Phytozome v13 [genome browser] Popgenie AspWood
Symbol
Arabidopsis homologues Show only best Show top 10	Locus ID BLAST score/e-value TF class Alias TAIR10 short description AT1G09540 290 / 2e-94 MYB AtMYB61 ARABIDOPSIS THALIANA MYB DOMAIN PROTEIN 61, myb domain protein 61 (.1) AT4G01680 274 / 1e-88 MYB ATMYB55 myb domain protein 55 (.1.2.3) AT1G57560 265 / 1e-85 MYB ATMYB50 myb domain protein 50 (.1) AT5G26660 250 / 2e-79 MYB ATMYB4, ATMYB86 myb domain protein 86 (.1) AT3G13890 209 / 2e-63 MYB ATMYB26, MS35 MALE STERILE 35, myb domain protein 26 (.1.2) AT3G12720 205 / 2e-62 MYB ATMYB67, AtY53 myb domain protein 67 (.1) AT3G02940 199 / 3e-60 MYB ATMYB107 myb domain protein 107 (.1) AT5G16770 200 / 4e-60 MYB ATMYB9 myb domain protein 9 (.1.2) AT3G61250 199 / 4e-60 MYB LMI2, ATMYB17 LATE MERISTEM IDENTITY2, myb domain protein 17 (.1) AT2G16720 196 / 2e-59 MYB AtY49, AtMYB7 ARABIDOPSIS THALIANA MYB DOMAIN PROTEIN 7, myb domain protein 7 (.1)
Paralogs Show only best Show top 10	Gene ID BLAST score/e-value At best hit BLAST score/e-value TAIR10 short description Potri.014G111200 [exp] 747 / 0 AT4G01680 282 / 3e-93 myb domain protein 55 (.1.2.3) Potri.005G001600 [exp] 411 / 5e-141 AT1G09540 376 / 1e-128 ARABIDOPSIS THALIANA MYB DOMAIN PROTEIN 61, myb domain protein 61 (.1) Potri.013G001000 [exp] 411 / 5e-141 AT1G09540 382 / 1e-130 ARABIDOPSIS THALIANA MYB DOMAIN PROTEIN 61, myb domain protein 61 (.1) Potri.010G004300 [exp] 271 / 1e-87 AT1G57560 247 / 4e-80 myb domain protein 50 (.1) Potri.012G084100 [exp] 251 / 2e-79 AT5G26660 253 / 1e-81 myb domain protein 86 (.1) Potri.015G082700 [exp] 247 / 8e-78 AT1G57560 254 / 2e-82 myb domain protein 50 (.1) Potri.003G155700 [exp] 211 / 1e-64 AT3G12720 240 / 1e-77 myb domain protein 67 (.1) Potri.008G081600 [exp] 208 / 3e-63 AT3G12720 262 / 2e-86 myb domain protein 67 (.1) Potri.001G197000 [exp] 207 / 1e-62 AT3G13890 256 / 1e-82 MALE STERILE 35, myb domain protein 26 (.1.2)
Flax homologues Show only best Show top 10	Locus ID BLAST score/e-value At best hit BLAST score/e-value TAIR10 short description Lus10015608 [exp] 207 / 2e-62 AT3G13890 249 / 8e-80 MALE STERILE 35, myb domain protein 26 (.1.2) Lus10038395 [exp] 199 / 2e-60 AT3G12720 233 / 2e-75 myb domain protein 67 (.1) Lus10001226 [exp] 199 / 3e-60 AT3G12720 231 / 8e-75 myb domain protein 67 (.1) Lus10038913 [exp] 192 / 2e-58 AT1G66230 247 / 3e-82 myb domain protein 20 (.1) Lus10033473 [exp] 192 / 2e-58 AT2G16720 249 / 2e-83 ARABIDOPSIS THALIANA MYB DOMAIN PROTEIN 7, myb domain protein 7 (.1) Lus10030378 [exp] 194 / 4e-58 AT3G61250 341 / 8e-118 LATE MERISTEM IDENTITY2, myb domain protein 17 (.1) Lus10018418 [exp] 194 / 9e-58 AT4G21440 334 / 5e-114 A. THALIANA MYB 4, MYB-like 102 (.1) Lus10014784 [exp] 192 / 1e-57 AT3G61250 342 / 1e-118 LATE MERISTEM IDENTITY2, myb domain protein 17 (.1) Lus10033003 [exp] 194 / 2e-57 AT5G15310 323 / 2e-109 myb domain protein 16 (.1.2) Lus10032226 [exp] 191 / 4e-57 AT4G12350 295 / 7e-100 myb domain protein 42 (.1)
PFAM info	Clan ID Clan name Pfam ID Pfam name Pfam description CL0123 [poplar] [flax] HTH PF00249 [poplar] [flax] Myb_DNA-binding Myb-like DNA-binding domain
Representative CDS sequence Show only first row Show all	>Potri.002G185900.1 pacid=42779670 polypeptide=Potri.002G185900.1.p locus=Potri.002G185900 ID=Potri.002G185900.1.v4.1 annot-version=v4.1 ATGGGGAGGCACTCTTGTTGCTACAAGCAGAAGCTACGGAAAGGCCTGTGGTCACCTGAGGAAGATGAGAAACTTTTAAGTCATATTACTAAGTATGGTC ATGGTTGTTGGAGTTCTGTCCCAAAGCAAGCTGGTTTGCAAAGGTGTGGCAAGAGCTGCAGACTAAGATGGATTAATTACTTAAGGCCTGATTTGAAGAG AGGCACATTCTCACATCTGGAAGAGAACCTCATAATTGAACTTCATGCGGTTCTAGGAAACAGGTGGTCTCAGATTGCGGCGCAGTTGCCTGGAAGGACT GACAATGAAATAAAGAATCTGTGGAACTCTTGCTTAAAGAAAAAACTTAAGCAGAGAGGCATTGACCCTGTCACCCATAAACCACTTTCTGAGGTTGAAG ATGGAGAAGACAAGAATCCAGCTGCCAGTAGAAACCAAGATAAAGCCTCTGCAGTATCCAATACTGAACTCAACCTCCTCAAAGCTGATCATTCTAAGCC ATTAGGAGCAAATTTACAAGAAAAAAGATCATCTTCAATTTCTCCTCATGGCAATCAATTGGAGAGGGAAAGTACTTCCAGCTTCAAGGCCATGAATGAA AACAACAACAATACCAATGACCATGGTAACAATAATTTGATGACACCAACAAGCAACAAGGACTTTTTCTTCGATAGGTTTACAGCTTTCCTCCATGAAG GCTCCACGAGTAATTGCCCGCCCTCGGGTTTTGTGGGACATTTCCCTCTTCAGCAATTGAATTATGCATCCAATGCCAGGCTCGCGACGAACTCAATTCC TTCTCTTTGGTTGAGCCAAACCAGTAAAGCTTTTGGCATGAATTGTGAATTCTCTTCGACTATGATACCCTCCATTCCTCCACCAGCTGTAACAAGCTCA TTTCTTTCTTCTTCTATGGGCTACAAGCCTTCCATTACTGTTCCACCAGACAATCCTTCATTGCCCTCTTTTACAACCAACAGTTATCGGCCGTGGGAAA CCGGTGCTCCCAGCAACAATAGTAACAGCAGTACTGGAAGCAATGGCAGTACTGAGCTGCAAAGCAACAGCTCCTTCTTTGAGAACACCATCTTTTCTTG GGGATTAGGAGACTGTAGCTCAACAGAAAAGGAGGCACAGAACCACTTGATTGGAAGCCAACAGGAGGACATCAGGTGGCCTGAATATCTTCAAAATCCA TTGCTCATGGCTGCTTCTTTGCAAAATCAAAATCAGCAATCCTTGTACAATGAGATAAAAACAGAAACACATCTCCTAACAGAAAATCCAAGTGGTATGT GGCCTGATAACCAGCAGGAACAGGAACCTTTACAGAATCCTGATATATGTCCGAAAGATATGCAGAGAATCACAGCATCTTATGGATATGTTTAG
AA sequence Show only first row Show all	>Potri.002G185900.1 pacid=42779670 polypeptide=Potri.002G185900.1.p locus=Potri.002G185900 ID=Potri.002G185900.1.v4.1 annot-version=v4.1 MGRHSCCYKQKLRKGLWSPEEDEKLLSHITKYGHGCWSSVPKQAGLQRCGKSCRLRWINYLRPDLKRGTFSHLEENLIIELHAVLGNRWSQIAAQLPGRT DNEIKNLWNSCLKKKLKQRGIDPVTHKPLSEVEDGEDKNPAASRNQDKASAVSNTELNLLKADHSKPLGANLQEKRSSSISPHGNQLERESTSSFKAMNE NNNNTNDHGNNNLMTPTSNKDFFFDRFTAFLHEGSTSNCPPSGFVGHFPLQQLNYASNARLATNSIPSLWLSQTSKAFGMNCEFSSTMIPSIPPPAVTSS FLSSSMGYKPSITVPPDNPSLPSFTTNSYRPWETGAPSNNSNSSTGSNGSTELQSNSSFFENTIFSWGLGDCSSTEKEAQNHLIGSQQEDIRWPEYLQNP LLMAASLQNQNQQSLYNEIKTETHLLTENPSGMWPDNQQEQEPLQNPDICPKDMQRITASYGYV

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DESeq2's median of ratios [POPLAR]

Mapped by: StringTie Salmon Order by: Tissue Experiment Show only core collection Show again Show schematic diagram

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Coexpressed genes

Compare expression of checked genes Schematic diagram [FLAX] Schematic diagram [POPLAR]

*If you select 4 or less genes and then press "compare expression", expression will be shown as a graph. If you select more than 4 genes, expresion will be shown as a heat map.
*Color represents relative expression level among samples for each gene.

At best	At TF class	At alias	At description		Locus	MR	r	Symbol	NWA:WT	NWB:WT	NWA:OE-ARK2	NWB:OE-ARK2	NWA:miRNA-ARK2	NWB:miRNA-ARK2	NW 0hr	WT H20	WT-NW	TUA1dEY NW	TUA1dEY+TUB15 NW	TUA1dY+TUB9 NW	Pde NW	NWA:WT GA	NWBWT GA	TW:WT	TW:WT GA	NWA:OE-ARK2 GA	NWB:OE-ARK2 GA	TW:OE-ARK2	TW:OE-ARK2 GA	NWA:miRNA-ARK2 GA	NWB:miRNA-ARK2 GA	TW:miRNA-ARK2	TW:miRNA-ARK2 GA	TW 2hr	TW 8hr	TW 24hr	TW 48hr	TW 96hr	TW 336hr	WT ACC	35S::etr1-1 H20	35S::etr1-1 ACC	LMX5::etr1-1 H20	LMX5::etr1-1 ACC	WT-TW	TUA1dEY TW	TUA1dEY+TUB15 TW	TUA1dY+TUB9 TW	Pde TW	OW:WT	OW:WT GA	OW:OE-ARK2	OW:OE-ARK2 GA	OW:miRNA-ARK2	OW:miRNA-ARK2 GA	OW 2hr	OW 8hr	OW 24hr	OW 48hr	OW 96hr	OW 336hr	Root CTR	Root LongCold	Root LongDrougt	Root LongHeat	Root LongSalt	Root ShortCold	Root ShortDrougt	Root ShortHeat	Root ShortSalt	Ptr root	Leaf CTR	Leaf LongCold	Leaf LongDrougt	Leaf LongHeat	Leaf LongSalt	Leaf ShortCold	Leaf ShortDrougt	Leaf ShortHeat	Leaf ShortSalt	Ptr leaf	Stem CTR	Stem LongCold	Stem LongDrougt	Stem LongHeat	Stem LongSalt	Stem ShortCold	Stem ShortDrougt	Stem ShortHeat	Stem ShortSalt	Ptr shoot	Ptr xylem	Ptr phloem	Ptr fiber	Ptr vessel	Ptr fiber vessel ray
AT1G09540	MYB	AtMYB61	ARABIDOPSIS THALIANA MYB DOMAI...		Potri.002G185900 [exp]	0	1
AT4G34588		CPuORF2	conserved peptide upstream ope...		Potri.009G119650 [exp]	11.18	0.7783
AT2G47480			Protein of unknown function (D...		Potri.013G010600 [exp]	15.81	0.7742
AT5G11730			Core-2/I-branching beta-1,6-N-...		Potri.006G233400 [exp]	15.87	0.6847
AT2G27690		CYP94C1	"cytochrome P450, family 94, s...		Potri.010G236700 [exp]	19.51	0.7708
AT5G64570		ATBXL4, XYL4	ARABIDOPSIS THALIANA BETA-D-XY...		Potri.001G206800 [exp]	21.63	0.7553	XYL4.2
AT1G11260		ATSTP1, STP1	sugar transporter 1 (.1)		Potri.011G042100 [exp]	24.00	0.6351
AT3G18295			Protein of unknown function (D...		Potri.012G055200 [exp]	24.49	0.7229
AT4G27940		ATMTM1	ARABIDOPSIS MANGANESE TRACKING...		Potri.012G032100 [exp]	25.23	0.7220
AT5G51840			unknown protein		Potri.012G132832 [exp]	26.73	0.7426
AT5G15740		RRT1	O-fucosyltransferase family pr...		Potri.004G113500 [exp]	41.02	0.7298

Compare expression of checked genes

Potri.002G185900 coexpression network

*The number of genes in the network is adjusted within 50 genes.
*Gene name represents symbol(s) of closest Arabidopsis gene if symbol(s) for the gene itself doesn't exist.
*Circle diameter represents the number of connection with other genes within this network.
*Color for gene name represents subnetwork based on the result of network clustering.