Plant FIBer expression Database

External link	JGI Phytozome v13 [genome browser] Popgenie AspWood
Symbol
Arabidopsis homologues Show only best Show top 10	Locus ID BLAST score/e-value TF class Alias TAIR10 short description AT2G47160 1152 / 0 AtBOR1, BOR1 REQUIRES HIGH BORON 1, HCO3- transporter family (.1.2) AT3G62270 1147 / 0 HCO3- transporter family (.1) AT3G06450 972 / 0 HCO3- transporter family (.1.2) AT1G15460 766 / 0 ATBOR4 ARABIDOPSIS THALIANA REQUIRES HIGH BORON 4, HCO3- transporter family (.1) AT1G74810 736 / 0 BOR5 HCO3- transporter family (.1) AT4G32510 714 / 0 HCO3- transporter family (.1) AT5G25430 706 / 0 HCO3- transporter family (.1)
Paralogs Show only best Show top 10	Gene ID BLAST score/e-value At best hit BLAST score/e-value TAIR10 short description Potri.014G116000 [exp] 1254 / 0 AT3G62270 1113 / 0.0 HCO3- transporter family (.1) Potri.008G100300 [exp] 1113 / 0 AT3G62270 1091 / 0.0 HCO3- transporter family (.1) Potri.015G077600 [exp] 1082 / 0 AT3G62270 1068 / 0.0 HCO3- transporter family (.1) Potri.012G081800 [exp] 1075 / 0 AT3G62270 1067 / 0.0 HCO3- transporter family (.1) Potri.003G059700 [exp] 785 / 0 AT1G15460 964 / 0.0 ARABIDOPSIS THALIANA REQUIRES HIGH BORON 4, HCO3- transporter family (.1) Potri.001G174500 [exp] 778 / 0 AT1G15460 959 / 0.0 ARABIDOPSIS THALIANA REQUIRES HIGH BORON 4, HCO3- transporter family (.1) Potri.006G249800 [exp] 755 / 0 AT1G15460 924 / 0.0 ARABIDOPSIS THALIANA REQUIRES HIGH BORON 4, HCO3- transporter family (.1) Potri.018G031700 [exp] 743 / 0 AT1G15460 947 / 0.0 ARABIDOPSIS THALIANA REQUIRES HIGH BORON 4, HCO3- transporter family (.1) Potri.006G154700 [exp] 741 / 0 AT1G15460 894 / 0.0 ARABIDOPSIS THALIANA REQUIRES HIGH BORON 4, HCO3- transporter family (.1)
Flax homologues Show only best Show top 10	Locus ID BLAST score/e-value At best hit BLAST score/e-value TAIR10 short description Lus10038060 [exp] 1134 / 0 AT3G62270 1155 / 0.0 HCO3- transporter family (.1) Lus10009995 [exp] 1036 / 0 AT3G62270 1054 / 0.0 HCO3- transporter family (.1) Lus10032651 [exp] 1012 / 0 AT3G62270 1048 / 0.0 HCO3- transporter family (.1) Lus10043101 [exp] 908 / 0 AT2G47160 951 / 0.0 REQUIRES HIGH BORON 1, HCO3- transporter family (.1.2) Lus10008083 [exp] 756 / 0 AT1G15460 932 / 0.0 ARABIDOPSIS THALIANA REQUIRES HIGH BORON 4, HCO3- transporter family (.1) Lus10013116 [exp] 751 / 0 AT1G15460 932 / 0.0 ARABIDOPSIS THALIANA REQUIRES HIGH BORON 4, HCO3- transporter family (.1) Lus10019443 [exp] 689 / 0 AT1G15460 888 / 0.0 ARABIDOPSIS THALIANA REQUIRES HIGH BORON 4, HCO3- transporter family (.1) Lus10043299 [exp] 582 / 0 AT1G15460 749 / 0.0 ARABIDOPSIS THALIANA REQUIRES HIGH BORON 4, HCO3- transporter family (.1)
PFAM info	Clan ID Clan name Pfam ID Pfam name Pfam description CL0062 [poplar] [flax] APC PF00955 [poplar] [flax] HCO3_cotransp HCO3- transporter family
Representative CDS sequence Show only first row Show all	>Potri.002G191000.2 pacid=42780096 polypeptide=Potri.002G191000.2.p locus=Potri.002G191000 ID=Potri.002G191000.2.v4.1 annot-version=v4.1 ATGGAGGAGACATTTGTGCCTTTCCGTGGAATCAAGAATGACCTTCGGGGAAGATTGATGTGTTACAAGCAAGACTGGACAGGTGGATTTAGAGCAGGCT TCAGGATTTTGGCTCCCACCACATATATATTCTTTGCTTCCGCGATTCCGGTCATCTCATTTGGGGAACAATTGGAGAGAAATACTGATGGAGTTCTAAC AGCAGTTCAGACCCTGGCATCCACCGCAGTTTGTGGGATCATACACTCAATTATTGGAGGTCAACCTTTGCTGATATTGGGAGTTGCAGAGCCGACAGTA ATTATGTACACATTCATGTTCAACTTTGCCAAAGAGAGAGCTGATTTGGGAAGGAACTTATTTCTAGCATGGACTGGATGGGTATGTGTTTGGACTTCAC TCTTGCTGTTCTTACTGGCTGTCTTAGGAGCATGCTCAATTATCAATAGGTTCACTCGTGTAGCTGGAGAGTTGTTTGGTCTGCTTATTGCAATGCTCTT CATGCAACAGGCTATCAAAGGTCTCGTGGATGAATTCCGCATTCCAAAACGAGAAGATCCAAAATCAATGGAGTTTATACCTTCATGGAGGTTCGCAAAC GGAATGTTTGCTTTGGTTCTATCATTTGGCCTCCTGCTCACTGCATTAAGAAGCCGCAAGGCAAGATCATGGCGCTATGGGAGTGGTTGGCTTAGAAGTT TAGTAGCAGACTACGGTGTACCCCTCATGGTTGTAGTATGGACAGCTGTTTCTTATATTCCGACAGGAAATGTTCCGAAAGGAATCCCCCGGCGTCTTTT CAGCCCAAATCCCTGGTCCCCTGGTGCATATGAGAACTGGACTGTAGTCAAGGAGATGTTAGATGTTCCCATTTCCTACATAATTGGAGCTTTCATTCCT GCTACGATGATCGCGGTGCTTTACTATTTTGACCATAGCGTAGCATCTCAACTTGCTCAGCAGAAGGAGTTCAATTTGAGAAAGCCATCTTCTTATCATT ATGACTTGCTTCTTTTGGGATTTCTGACCTTAATGTGTGGTCTTATTGGAATCCCACCATCAAATGGAGTCATTCCCCAATCTCCAATGCATACAAAAAG TCTGGCCACTCTTAAGTACCAGTTGCTTCGAAATAGACTTGTCGCAACAGCACGTACAAGTCTGAGAAAGAATGCCAGCCTGGGACAATTGTATGGAAAT ATGCAAGAAGCTTATCACCAAATTCAGACTCCTTTGATGTACCAACAGCCCTCTCAAGGTCTAAAGGAATTCAAAGAATCAACCATCCAAGCAGCTACAT GTACAGGCCATATAGATGCCCCAGTCGATGAGACAGTATTTGACATTGAGAAGGAAATTGATGACCTATTGCCTGTTGAGGTCAAAGAACAACGTGTAAG TAATTTGCTTCAAGCCACAATGGTTGGAGGTTGTGTTGCAGCCATGCCCTTCCTCAAAATGATCCCAACCTCAGTCCTTTGGGGCTATTTTGCCTTCATG GCTATTGAAAGTTTGCCTGGTAACCAGTTTTGGGAAAGAATATTATTGCTCTTCACCGCACCAAGCAGAAGATACAAAGTACTTGAAGATTTCCATGCCA CATTCGTAGAAACAGTTCCTTTCAAGTCAATTGCCATGTTTACAATTTTCCAGACGGCTTATTTGCTTATATGTTTTGGTCTCACTTGGATACCGATTGC GGGCCTTATGTTTCCTTTGATGATCATGCTTTTGGTTCCTGTAAGACAATACTGCCTTCCCAAGTTTTTCAAAGGAGCACACCTTCAAGACTTGGATGCA GCCGAGTATGAAGAAGCACCAGCTTTGCCATTCAATCTCGCAACAGAGGCAGAGCTGGGGGGAGGAGCTGCTTATGGAGGAGATGGAGAGATTTTGGATG AGGTTATCACCCGAAGCCGTGGAGAGTTCAGGCACACGAGTAGTCCTAAAATCTCAAGCTCCACTACAACACCAGCAAATAATCCTAAAAGCCTTCAAAG CCCTCGTCTCTCGTACACATATAGTCCTCGTATAAGTGAATTAAGAGGGCAGAAAAGTCCCAAATCCAGTGGAAGAGGGCTTAACAGTCCAAGGACTGGA GATCAAAAGTTATCTAAACTGGGGAAGAGTCCTTCAAGTTCAGAACAAAACTAG
AA sequence Show only first row Show all	>Potri.002G191000.2 pacid=42780096 polypeptide=Potri.002G191000.2.p locus=Potri.002G191000 ID=Potri.002G191000.2.v4.1 annot-version=v4.1 MEETFVPFRGIKNDLRGRLMCYKQDWTGGFRAGFRILAPTTYIFFASAIPVISFGEQLERNTDGVLTAVQTLASTAVCGIIHSIIGGQPLLILGVAEPTV IMYTFMFNFAKERADLGRNLFLAWTGWVCVWTSLLLFLLAVLGACSIINRFTRVAGELFGLLIAMLFMQQAIKGLVDEFRIPKREDPKSMEFIPSWRFAN GMFALVLSFGLLLTALRSRKARSWRYGSGWLRSLVADYGVPLMVVVWTAVSYIPTGNVPKGIPRRLFSPNPWSPGAYENWTVVKEMLDVPISYIIGAFIP ATMIAVLYYFDHSVASQLAQQKEFNLRKPSSYHYDLLLLGFLTLMCGLIGIPPSNGVIPQSPMHTKSLATLKYQLLRNRLVATARTSLRKNASLGQLYGN MQEAYHQIQTPLMYQQPSQGLKEFKESTIQAATCTGHIDAPVDETVFDIEKEIDDLLPVEVKEQRVSNLLQATMVGGCVAAMPFLKMIPTSVLWGYFAFM AIESLPGNQFWERILLLFTAPSRRYKVLEDFHATFVETVPFKSIAMFTIFQTAYLLICFGLTWIPIAGLMFPLMIMLLVPVRQYCLPKFFKGAHLQDLDA AEYEEAPALPFNLATEAELGGGAAYGGDGEILDEVITRSRGEFRHTSSPKISSSTTTPANNPKSLQSPRLSYTYSPRISELRGQKSPKSSGRGLNSPRTG DQKLSKLGKSPSSSEQN

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DESeq2's median of ratios [POPLAR]

Mapped by: StringTie Salmon Order by: Tissue Experiment Show only core collection Show again Show schematic diagram

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Coexpressed genes

Compare expression of checked genes Schematic diagram [FLAX] Schematic diagram [POPLAR]

*If you select 4 or less genes and then press "compare expression", expression will be shown as a graph. If you select more than 4 genes, expresion will be shown as a heat map.
*Color represents relative expression level among samples for each gene.

At best	At TF class	At alias	At description		Locus	MR	r	Symbol	NWA:WT	NWB:WT	NWA:OE-ARK2	NWB:OE-ARK2	NWA:miRNA-ARK2	NWB:miRNA-ARK2	NW 0hr	WT H20	WT-NW	TUA1dEY NW	TUA1dEY+TUB15 NW	TUA1dY+TUB9 NW	Pde NW	NWA:WT GA	NWBWT GA	TW:WT	TW:WT GA	NWA:OE-ARK2 GA	NWB:OE-ARK2 GA	TW:OE-ARK2	TW:OE-ARK2 GA	NWA:miRNA-ARK2 GA	NWB:miRNA-ARK2 GA	TW:miRNA-ARK2	TW:miRNA-ARK2 GA	TW 2hr	TW 8hr	TW 24hr	TW 48hr	TW 96hr	TW 336hr	WT ACC	35S::etr1-1 H20	35S::etr1-1 ACC	LMX5::etr1-1 H20	LMX5::etr1-1 ACC	WT-TW	TUA1dEY TW	TUA1dEY+TUB15 TW	TUA1dY+TUB9 TW	Pde TW	OW:WT	OW:WT GA	OW:OE-ARK2	OW:OE-ARK2 GA	OW:miRNA-ARK2	OW:miRNA-ARK2 GA	OW 2hr	OW 8hr	OW 24hr	OW 48hr	OW 96hr	OW 336hr	Root CTR	Root LongCold	Root LongDrougt	Root LongHeat	Root LongSalt	Root ShortCold	Root ShortDrougt	Root ShortHeat	Root ShortSalt	Ptr root	Leaf CTR	Leaf LongCold	Leaf LongDrougt	Leaf LongHeat	Leaf LongSalt	Leaf ShortCold	Leaf ShortDrougt	Leaf ShortHeat	Leaf ShortSalt	Ptr leaf	Stem CTR	Stem LongCold	Stem LongDrougt	Stem LongHeat	Stem LongSalt	Stem ShortCold	Stem ShortDrougt	Stem ShortHeat	Stem ShortSalt	Ptr shoot	Ptr xylem	Ptr phloem	Ptr fiber	Ptr vessel	Ptr fiber vessel ray
AT2G47160		AtBOR1, BOR1	REQUIRES HIGH BORON 1, HCO3- t...		Potri.002G191000 [exp]	0	1
AT5G05390		LAC12	laccase 12 (.1)		Potri.010G183500 [exp]	4.69	0.7120
AT1G34670	MYB	ATMYB93	myb domain protein 93 (.1)		Potri.007G093900 [exp]	10.09	0.7024
AT5G05390		LAC12	laccase 12 (.1)		Potri.008G073800 [exp]	14.31	0.6837	LAC90b
AT1G29290			unknown protein		Potri.011G108101 [exp]	20.14	0.6772
AT5G41761			unknown protein		Potri.012G031900 [exp]	21.21	0.6516
AT4G39070	CO		B-box zinc finger family prote...		Potri.009G122000 [exp]	32.68	0.6829
AT4G32410		AtCESA1, RSW1, ...	RADIALLY SWOLLEN 1, cellulose ...		Potri.006G251900 [exp]	33.46	0.6745	Pt-CESA4.4
AT4G10380		AtNIP5;1, NIP5;...	NOD26-LIKE MIP 8, NOD26-LIKE M...		Potri.001G455000 [exp]	35.00	0.6086
AT5G56170		LLG1	LORELEI-LIKE-GPI-ANCHORED PROT...		Potri.019G095200 [exp]	44.72	0.6491
AT2G29130		LAC2, ATLAC2	laccase 2 (.1)		Potri.009G034500 [exp]	45.89	0.6250

Compare expression of checked genes

Potri.002G191000 coexpression network

*The number of genes in the network is adjusted within 50 genes.
*Gene name represents symbol(s) of closest Arabidopsis gene if symbol(s) for the gene itself doesn't exist.
*Circle diameter represents the number of connection with other genes within this network.
*Color for gene name represents subnetwork based on the result of network clustering.