Plant FIBer expression Database

External link	JGI Phytozome v13 [genome browser] Popgenie AspWood
Symbol
Arabidopsis homologues Show only best Show top 10	Locus ID BLAST score/e-value TF class Alias TAIR10 short description AT3G03450 209 / 2e-60 GRAS RGL2 RGA-like 2 (.1) AT5G17490 195 / 2e-55 GRAS AtRGL3, RGL3 RGA-like protein 3 (.1) AT1G66350 193 / 1e-54 GRAS RGL1 RGA-like 1 (.1) AT2G01570 190 / 6e-53 GRAS RGA1 REPRESSOR OF GA1-3 1, REPRESSOR OF GA, GRAS family transcription factor family protein (.1) AT1G14920 185 / 1e-51 GRAS RGA2, GAI RESTORATION ON GROWTH ON AMMONIA 2, GIBBERELLIC ACID INSENSITIVE, GRAS family transcription factor family protein (.1) AT5G41920 156 / 4e-42 GRAS GRAS family transcription factor (.1) AT2G29065 153 / 2e-39 GRAS family transcription factor (.1) AT1G63100 145 / 5e-37 GRAS GRAS family transcription factor (.1) AT1G07520 142 / 1e-35 GRAS GRAS family transcription factor (.1) AT5G59450 140 / 2e-35 GRAS SCL11 GRAS family transcription factor (.1)
Paralogs Show only best Show top 10	Gene ID BLAST score/e-value At best hit BLAST score/e-value TAIR10 short description Potri.014G120000 [exp] 857 / 0 AT3G03450 174 / 1e-47 RGA-like 2 (.1) Potri.010G143700 [exp] 446 / 4e-151 AT1G66350 182 / 2e-50 RGA-like 1 (.1) Potri.010G143600 [exp] 405 / 3e-135 AT3G03450 205 / 7e-59 RGA-like 2 (.1) Potri.010G143500 [exp] 398 / 9e-133 AT3G03450 182 / 8e-51 RGA-like 2 (.1) Potri.010G143400 [exp] 385 / 2e-128 AT1G66350 207 / 1e-60 RGA-like 1 (.1) Potri.010G143200 [exp] 360 / 3e-119 AT1G66350 198 / 8e-58 RGA-like 1 (.1) Potri.008G131700 [exp] 205 / 2e-58 AT2G01570 781 / 0.0 REPRESSOR OF GA1-3 1, REPRESSOR OF GA, GRAS family transcription factor family protein (.1) Potri.010G110700 [exp] 195 / 8e-55 AT2G01570 764 / 0.0 REPRESSOR OF GA1-3 1, REPRESSOR OF GA, GRAS family transcription factor family protein (.1) Potri.017G125200 [exp] 194 / 4e-54 AT2G01570 701 / 0.0 REPRESSOR OF GA1-3 1, REPRESSOR OF GA, GRAS family transcription factor family protein (.1)
Flax homologues Show only best Show top 10	Locus ID BLAST score/e-value At best hit BLAST score/e-value TAIR10 short description Lus10002424 [exp] 548 / 0 AT5G17490 161 / 8e-43 RGA-like protein 3 (.1) Lus10001451 [exp] 510 / 2e-178 AT5G17490 179 / 7e-51 RGA-like protein 3 (.1) Lus10037758 [exp] 403 / 2e-134 AT3G03450 186 / 6e-52 RGA-like 2 (.1) Lus10016897 [exp] 397 / 5e-132 AT3G03450 189 / 5e-53 RGA-like 2 (.1) Lus10016893 [exp] 376 / 1e-123 AT3G03450 175 / 1e-47 RGA-like 2 (.1) Lus10000140 [exp] 355 / 3e-117 AT5G17490 86 / 8e-18 RGA-like protein 3 (.1) Lus10016886 [exp] 325 / 1e-105 AT3G03450 165 / 3e-45 RGA-like 2 (.1) Lus10016892 [exp] 325 / 1e-105 AT1G50420 155 / 1e-41 scarecrow-like 3 (.1) Lus10016891 [exp] 320 / 9e-104 AT3G03450 152 / 2e-40 RGA-like 2 (.1) Lus10037753 [exp] 321 / 3e-103 AT1G66350 156 / 8e-42 RGA-like 1 (.1)
PFAM info	Clan ID Clan name Pfam ID Pfam name Pfam description CL0063 [poplar] [flax] NADP_Rossmann PF03514 [poplar] [flax] GRAS GRAS domain family
Representative CDS sequence Show only first row Show all	>Potri.002G195600.1 pacid=42778563 polypeptide=Potri.002G195600.1.p locus=Potri.002G195600 ID=Potri.002G195600.1.v4.1 annot-version=v4.1 ATGATCAAAGGAGAGAAAAGCCGTTTATTTTCAATGGAAGACTTGGGACAGGTTTATCCTTTATGTTCTGAATATGGTGCTTATCAAGATAACACAGAGA ATAAGGGGCTTAATTTCTTTAGAGATCAGCAGCAGCCCCAACAGCAACAATCGCCACCCAAATCGAGTTATTTGACGTTAGATGATTTCCTTGGTTCTTG TTTGCCAGCACCAGCACAACCAATGCAGGAAATCAAAAGGCTTGAGAGTATTGCCAAAAATAGTAAAGAAACGCTATACACACCTGCTCTGTCATCATCT CTACAACTCCTACGCAAGTATGGAAGTAGGAAAGAAATTGAATGCAGCCAGCTTGGCGGTGCTAGCGATGAAACTTGGTTCAGTACTCGAAAGAAACTGT CAACTGAGGAGATCATAAGAGTAGCTGGATCAAGGTTCATACAATTCTCTGATCAAAGATATGATGATTTCTCCATGCTCATGCACCCTTTTGGTTATGC ACTCTCAGGCCTATCCGAGGAAGAAACAAGGGATGTAGAACTCACTCACCTTCTTTTAGCCACGGCAGAGAAGGTAGGCTACCAACAATTTGATCGTGCT AGCAGATTGCTCAGCCGTTGTGAATGGGTTGCATCCGAGAGATCCAATCCACTGCAGAGAGTTGTGTACTACTTTGCAGAAGCTCTTCAAGGGAGGATTC ATAAGGCAACAGGAAGATTCATTCCAGAGGAAATGAAGGGAAAACCGAACTGTGAAACTCTTCACGGGTTAAGTACACACCTAGCTCACCTTAGCATGCA CCAGAATGTTCCTATTAGTCAGGTAATGCAACTCACGGCGATCCAAGCAATAATTGAAAATGTTGGATCTGCAAGAAAGATCCATTTGATTGACCTCGAA ATCAGGAGTGGAGTTCAATGGACAGCCTTGATGCAAGCTCTTGCGGATCGTCAACGCCGGCTAGACCATCTTAAGATAACTGCCGTTGGCTTGAGAGGCA TACAAAAGATAGAGGAGACTGGTAAGAGGTTAGAAATCTTTGCTAGGTCCATGAACTTCCCATTCACTTTCAAGCCAATACAGGTATCGTGCATGTCTGA AATCAAAGAGGAGCTATTTGAAACTGCAGCTGATGAAGCCATGGTTGTTGTCGCTAACATGATACTCAGGACCATGCTCTCAAGGCCAGCTTGCTTGGAA AATTTGATGAGAGTGATTAAAAATCTTAATCCTTCAATAATGATCGTCGGCGAAGTTGAGGCGAATCATAACTCACCAACATTCGTGAATCGTTTCATTG AAGCACTGTTCTTTTATGGTGCATATTTCGATTGCCTTGAGACCTGCCTGAAACAGAACACTGAGCACAGAACGATAACTGAAGCAACCTTCTCTAATGG GATAGAAAATATTGTGACAATGGAGGGCACAGACAGGATTGCTAGAAGTGTGAAGATGGACGTATGGAGGGCATTTTTCTCAAGATTTAGAATGGTGGAA GTAGGATTTAGTGAGTCATCCTTGTACCAAGCTGGCTTGATTCCAAAGCAATTTCCTTGTGGCAGTTCATGTACTCTTGAAAAGAATGGCAAGTGCCTGA TTGTTGGGTGGAAAGGAACACCATTGCATTCCCTTTCAGCTTGGAAGTTTTCTACAGAGAGACTATGGAGGCCGTTGGCAAATAATAACTTCTGA
AA sequence Show only first row Show all	>Potri.002G195600.1 pacid=42778563 polypeptide=Potri.002G195600.1.p locus=Potri.002G195600 ID=Potri.002G195600.1.v4.1 annot-version=v4.1 MIKGEKSRLFSMEDLGQVYPLCSEYGAYQDNTENKGLNFFRDQQQPQQQQSPPKSSYLTLDDFLGSCLPAPAQPMQEIKRLESIAKNSKETLYTPALSSS LQLLRKYGSRKEIECSQLGGASDETWFSTRKKLSTEEIIRVAGSRFIQFSDQRYDDFSMLMHPFGYALSGLSEEETRDVELTHLLLATAEKVGYQQFDRA SRLLSRCEWVASERSNPLQRVVYYFAEALQGRIHKATGRFIPEEMKGKPNCETLHGLSTHLAHLSMHQNVPISQVMQLTAIQAIIENVGSARKIHLIDLE IRSGVQWTALMQALADRQRRLDHLKITAVGLRGIQKIEETGKRLEIFARSMNFPFTFKPIQVSCMSEIKEELFETAADEAMVVVANMILRTMLSRPACLE NLMRVIKNLNPSIMIVGEVEANHNSPTFVNRFIEALFFYGAYFDCLETCLKQNTEHRTITEATFSNGIENIVTMEGTDRIARSVKMDVWRAFFSRFRMVE VGFSESSLYQAGLIPKQFPCGSSCTLEKNGKCLIVGWKGTPLHSLSAWKFSTERLWRPLANNNF

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DESeq2's median of ratios [POPLAR]

Mapped by: StringTie Salmon Order by: Tissue Experiment Show only core collection Show again Show schematic diagram

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Coexpressed genes

Compare expression of checked genes Schematic diagram [FLAX] Schematic diagram [POPLAR]

*If you select 4 or less genes and then press "compare expression", expression will be shown as a graph. If you select more than 4 genes, expresion will be shown as a heat map.
*Color represents relative expression level among samples for each gene.

At best	At TF class	At alias	At description		Locus	MR	r	Symbol	NWA:WT	NWB:WT	NWA:OE-ARK2	NWB:OE-ARK2	NWA:miRNA-ARK2	NWB:miRNA-ARK2	NW 0hr	WT H20	WT-NW	TUA1dEY NW	TUA1dEY+TUB15 NW	TUA1dY+TUB9 NW	Pde NW	NWA:WT GA	NWBWT GA	TW:WT	TW:WT GA	NWA:OE-ARK2 GA	NWB:OE-ARK2 GA	TW:OE-ARK2	TW:OE-ARK2 GA	NWA:miRNA-ARK2 GA	NWB:miRNA-ARK2 GA	TW:miRNA-ARK2	TW:miRNA-ARK2 GA	TW 2hr	TW 8hr	TW 24hr	TW 48hr	TW 96hr	TW 336hr	WT ACC	35S::etr1-1 H20	35S::etr1-1 ACC	LMX5::etr1-1 H20	LMX5::etr1-1 ACC	WT-TW	TUA1dEY TW	TUA1dEY+TUB15 TW	TUA1dY+TUB9 TW	Pde TW	OW:WT	OW:WT GA	OW:OE-ARK2	OW:OE-ARK2 GA	OW:miRNA-ARK2	OW:miRNA-ARK2 GA	OW 2hr	OW 8hr	OW 24hr	OW 48hr	OW 96hr	OW 336hr	Root CTR	Root LongCold	Root LongDrougt	Root LongHeat	Root LongSalt	Root ShortCold	Root ShortDrougt	Root ShortHeat	Root ShortSalt	Ptr root	Leaf CTR	Leaf LongCold	Leaf LongDrougt	Leaf LongHeat	Leaf LongSalt	Leaf ShortCold	Leaf ShortDrougt	Leaf ShortHeat	Leaf ShortSalt	Ptr leaf	Stem CTR	Stem LongCold	Stem LongDrougt	Stem LongHeat	Stem LongSalt	Stem ShortCold	Stem ShortDrougt	Stem ShortHeat	Stem ShortSalt	Ptr shoot	Ptr xylem	Ptr phloem	Ptr fiber	Ptr vessel	Ptr fiber vessel ray
AT3G03450	GRAS	RGL2	RGA-like 2 (.1)		Potri.002G195600 [exp]	0	1
AT2G39200		ATMLO12, MLO12	MILDEW RESISTANCE LOCUS O 12, ...		Potri.007G064200 [exp]	7.00	0.9792
AT2G38290		AMT2;1, ATAMT2	AMMONIUM TRANSPORTER 2;1, ammo...		Potri.018G033500 [exp]	9.79	0.9848	PtrAMT4-2
AT4G12420		SKU5	Cupredoxin superfamily protein...		Potri.008G032200 [exp]	13.78	0.9846
AT5G27740		RFC3, EMB251, E...	replication factor C 3, EMBRYO...		Potri.007G022900 [exp]	14.00	0.9360
AT1G68040			S-adenosyl-L-methionine-depend...		Potri.010G104800 [exp]	16.88	0.9844
AT3G08680			Leucine-rich repeat protein ki...		Potri.011G088000 [exp]	18.76	0.9841
					Potri.003G126200 [exp]	21.56	0.9840
AT5G59090		ATSBT4.12	subtilase 4.12 (.1.2.3)		Potri.012G133200 [exp]	22.18	0.9839
					Potri.002G067000 [exp]	24.00	0.8654
					Potri.014G081800 [exp]	25.65	0.9838

Compare expression of checked genes

Potri.002G195600 coexpression network

*The number of genes in the network is adjusted within 50 genes.
*Gene name represents symbol(s) of closest Arabidopsis gene if symbol(s) for the gene itself doesn't exist.
*Circle diameter represents the number of connection with other genes within this network.
*Color for gene name represents subnetwork based on the result of network clustering.