Plant FIBer expression Database

External link	JGI Phytozome v13 [genome browser] Popgenie AspWood
Symbol
Arabidopsis homologues Show only best Show top 10	Locus ID BLAST score/e-value TF class Alias TAIR10 short description AT2G30950 1040 / 0 FTSH2, VAR2 VARIEGATED 2, FtsH extracellular protease family (.1) AT1G06430 1029 / 0 FTSH8 FTSH protease 8 (.1) AT5G15250 821 / 0 FTSH6, ATFTSH6 FTSH protease 6 (.1.2) AT1G50250 483 / 2e-161 FTSH1 FTSH protease 1 (.1) AT5G42270 480 / 8e-161 FTSH5, VAR1 VARIEGATED 1, FtsH extracellular protease family (.1) AT5G53170 390 / 1e-124 FTSH11 FTSH protease 11 (.1) AT2G26140 379 / 2e-121 FTSH4 FTSH protease 4 (.1) AT2G29080 364 / 7e-115 FTSH3 FTSH protease 3 (.1) AT1G07510 358 / 1e-112 FTSH10 FTSH protease 10 (.1) AT3G47060 352 / 3e-110 FTSH7 FTSH protease 7 (.1)
Paralogs Show only best Show top 10	Gene ID BLAST score/e-value At best hit BLAST score/e-value TAIR10 short description Potri.014G139500 [exp] 1126 / 0 AT2G30950 1057 / 0.0 VARIEGATED 2, FtsH extracellular protease family (.1) Potri.017G084000 [exp] 857 / 0 AT5G15250 959 / 0.0 FTSH protease 6 (.1.2) Potri.002G012000 [exp] 487 / 1e-163 AT5G42270 1094 / 0.0 VARIEGATED 1, FtsH extracellular protease family (.1) Potri.005G249200 [exp] 483 / 1e-161 AT5G42270 1077 / 0.0 VARIEGATED 1, FtsH extracellular protease family (.1) Potri.002G220366 [exp] 428 / 7e-147 AT1G06430 405 / 1e-138 FTSH protease 8 (.1) Potri.006G227700 [exp] 380 / 6e-122 AT2G26140 1066 / 0.0 FTSH protease 4 (.1) Potri.015G020700 [exp] 381 / 3e-121 AT5G53170 1096 / 0.0 FTSH protease 11 (.1) Potri.012G000700 [exp] 373 / 2e-118 AT5G53170 1076 / 0.0 FTSH protease 11 (.1) Potri.016G099800 [exp] 357 / 4e-112 AT2G29080 1123 / 0.0 FTSH protease 3 (.1)
Flax homologues Show only best Show top 10	Locus ID BLAST score/e-value At best hit BLAST score/e-value TAIR10 short description Lus10001420 [exp] 1053 / 0 AT2G30950 1155 / 0.0 VARIEGATED 2, FtsH extracellular protease family (.1) Lus10001054 [exp] 1047 / 0 AT2G30950 1154 / 0.0 VARIEGATED 2, FtsH extracellular protease family (.1) Lus10012277 [exp] 469 / 1e-159 AT1G50250 935 / 0.0 FTSH protease 1 (.1) Lus10016003 [exp] 472 / 2e-157 AT5G42270 1129 / 0.0 VARIEGATED 1, FtsH extracellular protease family (.1) Lus10021824 [exp] 471 / 4e-157 AT5G42270 934 / 0.0 VARIEGATED 1, FtsH extracellular protease family (.1) Lus10014930 [exp] 386 / 1e-123 AT5G53170 1077 / 0.0 FTSH protease 11 (.1) Lus10034572 [exp] 377 / 3e-122 AT5G42270 791 / 0.0 VARIEGATED 1, FtsH extracellular protease family (.1) Lus10038819 [exp] 379 / 5e-121 AT5G53170 1064 / 0.0 FTSH protease 11 (.1) Lus10039334 [exp] 380 / 1e-120 AT5G53170 1087 / 0.0 FTSH protease 11 (.1) Lus10001060 [exp] 377 / 9e-120 AT5G53170 1090 / 0.0 FTSH protease 11 (.1)
PFAM info	Clan ID Clan name Pfam ID Pfam name Pfam description CL0023 [poplar] [flax] P-loop_NTPase PF00004 [poplar] [flax] AAA ATPase family associated with various cellular activities (AAA) CL0126 [poplar] [flax] Peptidase_MA PF01434 [poplar] [flax] Peptidase_M41 Peptidase family M41 CL0126 [poplar] [flax] PF06480 [poplar] [flax] FtsH_ext FtsH Extracellular
Representative CDS sequence Show only first row Show all	>Potri.002G215100.1 pacid=42776823 polypeptide=Potri.002G215100.1.p locus=Potri.002G215100 ID=Potri.002G215100.1.v4.1 annot-version=v4.1 ATGTTTGCTTTCGCATGCTTCCAGATGGCAGCGTCCTCGGCAGCGTGTCTAGTTGGAAACGGTTTGTCAGCCACCGGTAATGCCAAGCAGAATTCGACCA AGGAGTTCTTCTGTGGCGGTCACCTTTTCGTTTCTACCAATCTCCTTCCTTCATCTAAGACCTCAAGAAATGTTATTGCAAAGGAAGCTTTGGACAAGAG ACGGCATGATGCAAGAAGGGGTTTTCTGAAGGTTTTGCTTGGGGGAATCAGTGGATCCGCTTTACTGGGAGGTGGGAGAGCATACGCCGATGAACAAGGT GTTTCTTCCTCCAGGATGTCTTATTCTAGATTCTTGGAGTATTTGGATAAGGGTAGGGTGAATAAGGTTGACTTGTATGAGAATGGAACCATCGCTATTG TAGAGGCTGTTTCCCCTGAGTTGGGTAACCGGGTCCAGCGAGTTCGTGTGCAACTTCCAGGACTCAGCCAAGAGCTGCTTCAGAAGTTTAGAGAGAAGAA CATTGACTTTGCAGCACATAATGCTCAAGAGGACTCTGGTTCTCTGCTATTCAACCTGATTGGAAACCTGGCTTTTCCTTTAATCTTAATTGGAGGTCTG TTCCTCCTTTCTCGACGCTCATCAGGAGGAATGGGTGGGCCTGGTGGTCCTGGTTTCCCCTTATCTTTCGGCCAATCTAAGGCAAAGTTCCAAATGGAAC CAAACACTGGGGTGACATTTGATGATGTTGCTGGAGTGGATGAAGCAAAGCAGGATTTCATGGAGGTAGTGGAGTTTCTCAAGAAGCCTGAGAGATTTAC TGCAGTAGGGGCTCGCATTCCGAAAGGTGTTCTTCTTGTTGGACCTCCAGGTACTGGGAAGACTCTTCTGGCCAAGGCAATTGCTGGTGAAGCGGGTGTT CCGTTTTTCTCCATTTCAGGTTCGGAGTTTGTTGAGATGTTTGTTGGTGTTGGTGCCTCTCGAGTCCGGGATCTCTTCAAGAAGGCCAAAGAGAATGCTC CTTGCATTGTGTTTGTGGATGAAATTGATGCCGTGGGAAGGCAAAGAGGAACTGGAATTGGCGGAGGAAATGATGAAAGAGAGCAGACCCTTAACCAGCT TCTGACAGAAATGGATGGTTTTGAGGGTAATACTGGCATCATTGTCGTTGCAGCAACTAACAGGGCAGACATTCTTGACTCTGCCTTGTTGAGGCCAGGA CGGTTTGATAGACAGGTGACTGTTGATGTCCCGGATGTACGGGGAAGAACAGAGATACTGAAAGTTCATGCTAGCAACAAGAAATTTGATGCTGATGTGT CTCTTGATGTGGTAGCCATGAGAACACCTGGTTTCAGTGGGGCTGATCTTGCAAACCTCTTGAATGAGGCAGCTATCCTAGCTGGGCGGCGTGGAAAGAC AGCAATTTCATCTAAAGAGATTGATGATTCAATTGATAGGATTGTCGCTGGAATGGAAGGAACCGTTATGACAGATGGAAAGAGTAAAAGTCTTGTTGCA TACCATGAAGTTGGCCATGCCATTTGCGGAACTTTGACTCCAGGGCATGATGCAGTTCAGAAAGTCACCCTCGTTCCGCGAGGCCAGGCACGGGGTCTCA CCTGGTTTATTCCTGCAGATGATCCCACATTGATCTCCAAGCAGCAACTTTTTGCAAGAATAGTTGGTGGCTTAGGTGGCAGAGCTGCTGAAGAAGTGAT CTTTGGTGAGTCGGAGGTGACTACTGGGGCAGCTGGTGATTTGCAGCAGGTCACCGGTTTGGCTAAACAGATGGTAACCACGTTTGGAATGTCTGAAATT GGCCCATGGTCACTCATGGACGCATCAGCTCAAAGTGGTGACGTCATCATGAGAATGATGGCAAGGAACTCAATGTCAGAAAAGCTAGCGGAAGACATTG ATTCTGCCGTGAAGAGGATATCAGACAGTGCATATGAAATTGCATTGAGCCACATAAGGTACAACCGTGAGGCCATTGATAAGATTGTGGAAGTCCTCCT CGAGAAGGAAACTATGACTGGTGATGAGTTCCGAGCAATCCTCTCTGAATTTGTTGAGATTCCAGCTGAGAATCGGGTCCCTTCCTCAGTATCCTCCCCG GTGGCTGTGTAA
AA sequence Show only first row Show all	>Potri.002G215100.1 pacid=42776823 polypeptide=Potri.002G215100.1.p locus=Potri.002G215100 ID=Potri.002G215100.1.v4.1 annot-version=v4.1 MFAFACFQMAASSAACLVGNGLSATGNAKQNSTKEFFCGGHLFVSTNLLPSSKTSRNVIAKEALDKRRHDARRGFLKVLLGGISGSALLGGGRAYADEQG VSSSRMSYSRFLEYLDKGRVNKVDLYENGTIAIVEAVSPELGNRVQRVRVQLPGLSQELLQKFREKNIDFAAHNAQEDSGSLLFNLIGNLAFPLILIGGL FLLSRRSSGGMGGPGGPGFPLSFGQSKAKFQMEPNTGVTFDDVAGVDEAKQDFMEVVEFLKKPERFTAVGARIPKGVLLVGPPGTGKTLLAKAIAGEAGV PFFSISGSEFVEMFVGVGASRVRDLFKKAKENAPCIVFVDEIDAVGRQRGTGIGGGNDEREQTLNQLLTEMDGFEGNTGIIVVAATNRADILDSALLRPG RFDRQVTVDVPDVRGRTEILKVHASNKKFDADVSLDVVAMRTPGFSGADLANLLNEAAILAGRRGKTAISSKEIDDSIDRIVAGMEGTVMTDGKSKSLVA YHEVGHAICGTLTPGHDAVQKVTLVPRGQARGLTWFIPADDPTLISKQQLFARIVGGLGGRAAEEVIFGESEVTTGAAGDLQQVTGLAKQMVTTFGMSEI GPWSLMDASAQSGDVIMRMMARNSMSEKLAEDIDSAVKRISDSAYEIALSHIRYNREAIDKIVEVLLEKETMTGDEFRAILSEFVEIPAENRVPSSVSSP VAV

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DESeq2's median of ratios [POPLAR]

Mapped by: StringTie Salmon Order by: Tissue Experiment Show only core collection Show again Show schematic diagram

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Coexpressed genes

Compare expression of checked genes Schematic diagram [FLAX] Schematic diagram [POPLAR]

*If you select 4 or less genes and then press "compare expression", expression will be shown as a graph. If you select more than 4 genes, expresion will be shown as a heat map.
*Color represents relative expression level among samples for each gene.

At best	At TF class	At alias	At description		Locus	MR	r	Symbol	NWA:WT	NWB:WT	NWA:OE-ARK2	NWB:OE-ARK2	NWA:miRNA-ARK2	NWB:miRNA-ARK2	NW 0hr	WT H20	WT-NW	TUA1dEY NW	TUA1dEY+TUB15 NW	TUA1dY+TUB9 NW	Pde NW	NWA:WT GA	NWBWT GA	TW:WT	TW:WT GA	NWA:OE-ARK2 GA	NWB:OE-ARK2 GA	TW:OE-ARK2	TW:OE-ARK2 GA	NWA:miRNA-ARK2 GA	NWB:miRNA-ARK2 GA	TW:miRNA-ARK2	TW:miRNA-ARK2 GA	TW 2hr	TW 8hr	TW 24hr	TW 48hr	TW 96hr	TW 336hr	WT ACC	35S::etr1-1 H20	35S::etr1-1 ACC	LMX5::etr1-1 H20	LMX5::etr1-1 ACC	WT-TW	TUA1dEY TW	TUA1dEY+TUB15 TW	TUA1dY+TUB9 TW	Pde TW	OW:WT	OW:WT GA	OW:OE-ARK2	OW:OE-ARK2 GA	OW:miRNA-ARK2	OW:miRNA-ARK2 GA	OW 2hr	OW 8hr	OW 24hr	OW 48hr	OW 96hr	OW 336hr	Root CTR	Root LongCold	Root LongDrougt	Root LongHeat	Root LongSalt	Root ShortCold	Root ShortDrougt	Root ShortHeat	Root ShortSalt	Ptr root	Leaf CTR	Leaf LongCold	Leaf LongDrougt	Leaf LongHeat	Leaf LongSalt	Leaf ShortCold	Leaf ShortDrougt	Leaf ShortHeat	Leaf ShortSalt	Ptr leaf	Stem CTR	Stem LongCold	Stem LongDrougt	Stem LongHeat	Stem LongSalt	Stem ShortCold	Stem ShortDrougt	Stem ShortHeat	Stem ShortSalt	Ptr shoot	Ptr xylem	Ptr phloem	Ptr fiber	Ptr vessel	Ptr fiber vessel ray
AT2G30950		FTSH2, VAR2	VARIEGATED 2, FtsH extracellul...		Potri.002G215100 [exp]	0	1
AT5G38520			alpha/beta-Hydrolases superfam...		Potri.019G063900 [exp]	2.82	0.9865
AT1G06430		FTSH8	FTSH protease 8 (.1)		Potri.002G220366 [exp]	3.00	0.9946
AT3G08010		ATAB2	RNA binding (.1)		Potri.009G059600 [exp]	6.92	0.9684
AT3G20930			RNA-binding (RRM/RBD/RNP motif...		Potri.010G237200 [exp]	7.74	0.9701
AT2G35660		CTF2B, CTF2A	FAD/NAD(P)-binding oxidoreduct...		Potri.001G152600 [exp]	9.89	0.9672	Pt-CTF2.2
AT4G36910		CBSX1, CDCP2, L...	LOSS OF THE TIMING OF ET AND J...		Potri.007G046400 [exp]	10.19	0.9599
AT5G55710		AtTic20-V	translocon at the inner envelo...		Potri.004G191700 [exp]	11.95	0.9558
AT5G42270		FTSH5, VAR1	VARIEGATED 1, FtsH extracellul...		Potri.002G012000 [exp]	13.78	0.9580	FTSH2.2
					Potri.010G120300 [exp]	15.16	0.9356
AT1G66670		NCLPP3, NCLPP4,...	CLP protease proteolytic subun...		Potri.004G092100 [exp]	15.29	0.9484

Compare expression of checked genes

Potri.002G215100 coexpression network

*The number of genes in the network is adjusted within 50 genes.
*Gene name represents symbol(s) of closest Arabidopsis gene if symbol(s) for the gene itself doesn't exist.
*Circle diameter represents the number of connection with other genes within this network.
*Color for gene name represents subnetwork based on the result of network clustering.