Plant FIBer expression Database

External link	JGI Phytozome v13 [genome browser] Popgenie AspWood
Symbol	Pt-RPM1.1
Arabidopsis homologues Show only best Show top 10	Locus ID BLAST score/e-value TF class Alias TAIR10 short description AT3G07040 573 / 0 RPS3, RPM1 RESISTANCE TO PSEUDOMONAS SYRINGAE 3, RESISTANCE TO P. SYRINGAE PV MACULICOLA 1, NB-ARC domain-containing disease resistance protein (.1) AT5G35450 341 / 6e-103 Disease resistance protein (CC-NBS-LRR class) family (.1) AT5G43470 339 / 4e-102 HRT, RCY1, RPP8 RECOGNITION OF PERONOSPORA PARASITICA 8, RESISTANT TO CMV\(Y\) 1, HYPERSENSITIVE RESPONSE TO TCV, Disease resistance protein (CC-NBS-LRR class) family (.1), Disease resistance protein (CC-NBS-LRR class) family (.2) AT5G48620 333 / 7e-100 Disease resistance protein (CC-NBS-LRR class) family (.1) AT1G53350 307 / 3e-90 Disease resistance protein (CC-NBS-LRR class) family (.1) AT1G58390 302 / 1e-88 Disease resistance protein (CC-NBS-LRR class) family (.1) AT1G58807 298 / 2e-86 Disease resistance protein (CC-NBS-LRR class) family (.1), Disease resistance protein (CC-NBS-LRR class) family (.2) AT1G58410 295 / 4e-86 Disease resistance protein (CC-NBS-LRR class) family (.1) AT1G59218 295 / 3e-85 Disease resistance protein (CC-NBS-LRR class) family (.1), Disease resistance protein (CC-NBS-LRR class) family (.2) AT1G58848 295 / 3e-85 Disease resistance protein (CC-NBS-LRR class) family (.1), Disease resistance protein (CC-NBS-LRR class) family (.2)
Paralogs Show only best Show top 10	Gene ID BLAST score/e-value At best hit BLAST score/e-value TAIR10 short description Potri.018G013500 [exp] 647 / 0 AT3G07040 484 / 7e-157 RESISTANCE TO PSEUDOMONAS SYRINGAE 3, RESISTANCE TO P. SYRINGAE PV MACULICOLA 1, NB-ARC domain-containing disease resistance protein (.1) Potri.001G134500 [exp] 615 / 0 AT3G07040 422 / 1e-132 RESISTANCE TO PSEUDOMONAS SYRINGAE 3, RESISTANCE TO P. SYRINGAE PV MACULICOLA 1, NB-ARC domain-containing disease resistance protein (.1) Potri.003G099000 [exp] 596 / 0 AT3G07040 479 / 2e-154 RESISTANCE TO PSEUDOMONAS SYRINGAE 3, RESISTANCE TO P. SYRINGAE PV MACULICOLA 1, NB-ARC domain-containing disease resistance protein (.1) Potri.001G134450 [exp] 585 / 0 AT3G07040 488 / 1e-157 RESISTANCE TO PSEUDOMONAS SYRINGAE 3, RESISTANCE TO P. SYRINGAE PV MACULICOLA 1, NB-ARC domain-containing disease resistance protein (.1) Potri.001G134300 [exp] 581 / 0 AT3G07040 487 / 2e-157 RESISTANCE TO PSEUDOMONAS SYRINGAE 3, RESISTANCE TO P. SYRINGAE PV MACULICOLA 1, NB-ARC domain-containing disease resistance protein (.1) Potri.005G035400 [exp] 580 / 0 AT3G07040 422 / 6e-133 RESISTANCE TO PSEUDOMONAS SYRINGAE 3, RESISTANCE TO P. SYRINGAE PV MACULICOLA 1, NB-ARC domain-containing disease resistance protein (.1) Potri.011G165700 [exp] 578 / 0 AT3G07040 471 / 1e-151 RESISTANCE TO PSEUDOMONAS SYRINGAE 3, RESISTANCE TO P. SYRINGAE PV MACULICOLA 1, NB-ARC domain-containing disease resistance protein (.1) Potri.001G134400 [exp] 578 / 0 AT3G07040 427 / 3e-134 RESISTANCE TO PSEUDOMONAS SYRINGAE 3, RESISTANCE TO P. SYRINGAE PV MACULICOLA 1, NB-ARC domain-containing disease resistance protein (.1) Potri.003G099100 [exp] 570 / 0 AT3G07040 482 / 8e-156 RESISTANCE TO PSEUDOMONAS SYRINGAE 3, RESISTANCE TO P. SYRINGAE PV MACULICOLA 1, NB-ARC domain-containing disease resistance protein (.1)
Flax homologues Show only best Show top 10	Locus ID BLAST score/e-value At best hit BLAST score/e-value TAIR10 short description Lus10014922 [exp] 1137 / 0 AT3G07040 523 / 1e-171 RESISTANCE TO PSEUDOMONAS SYRINGAE 3, RESISTANCE TO P. SYRINGAE PV MACULICOLA 1, NB-ARC domain-containing disease resistance protein (.1) Lus10020016 [exp] 590 / 0 AT3G07040 563 / 0.0 RESISTANCE TO PSEUDOMONAS SYRINGAE 3, RESISTANCE TO P. SYRINGAE PV MACULICOLA 1, NB-ARC domain-containing disease resistance protein (.1) Lus10002945 [exp] 573 / 0 AT3G07040 580 / 0.0 RESISTANCE TO PSEUDOMONAS SYRINGAE 3, RESISTANCE TO P. SYRINGAE PV MACULICOLA 1, NB-ARC domain-containing disease resistance protein (.1) Lus10041243 [exp] 571 / 0 AT3G07040 526 / 1e-172 RESISTANCE TO PSEUDOMONAS SYRINGAE 3, RESISTANCE TO P. SYRINGAE PV MACULICOLA 1, NB-ARC domain-containing disease resistance protein (.1) Lus10028639 [exp] 568 / 0 AT3G07040 579 / 0.0 RESISTANCE TO PSEUDOMONAS SYRINGAE 3, RESISTANCE TO P. SYRINGAE PV MACULICOLA 1, NB-ARC domain-containing disease resistance protein (.1) Lus10018937 [exp] 566 / 0 AT3G07040 587 / 0.0 RESISTANCE TO PSEUDOMONAS SYRINGAE 3, RESISTANCE TO P. SYRINGAE PV MACULICOLA 1, NB-ARC domain-containing disease resistance protein (.1) Lus10038983 [exp] 523 / 4e-171 AT3G07040 468 / 5e-150 RESISTANCE TO PSEUDOMONAS SYRINGAE 3, RESISTANCE TO P. SYRINGAE PV MACULICOLA 1, NB-ARC domain-containing disease resistance protein (.1) Lus10027281 [exp] 510 / 2e-166 AT3G07040 459 / 5e-147 RESISTANCE TO PSEUDOMONAS SYRINGAE 3, RESISTANCE TO P. SYRINGAE PV MACULICOLA 1, NB-ARC domain-containing disease resistance protein (.1) Lus10014712 [exp] 464 / 1e-148 AT3G07040 492 / 3e-159 RESISTANCE TO PSEUDOMONAS SYRINGAE 3, RESISTANCE TO P. SYRINGAE PV MACULICOLA 1, NB-ARC domain-containing disease resistance protein (.1) Lus10019530 [exp] 325 / 3e-100 AT3G07040 311 / 4e-95 RESISTANCE TO PSEUDOMONAS SYRINGAE 3, RESISTANCE TO P. SYRINGAE PV MACULICOLA 1, NB-ARC domain-containing disease resistance protein (.1)
PFAM info	Clan ID Clan name Pfam ID Pfam name Pfam description CL0023 [poplar] [flax] P-loop_NTPase PF00931 [poplar] [flax] NB-ARC NB-ARC domain
Representative CDS sequence Show only first row Show all	>Potri.002G216800.1 pacid=42777382 polypeptide=Potri.002G216800.1.p locus=Potri.002G216800 ID=Potri.002G216800.1.v4.1 annot-version=v4.1 ATGGCAGATGGTGCTGTGAGTTTCTTACTTGATAAACTAACTACAATCCTACTGCAAAAAGCATCACTGCTGGGAGATGCTCGTGATAAAATAGAAGAAA TCAAACTTGAGCTAGAGAGCATGAAATCATTCTTAAGAGATGCAGAAAGAAGAAAGGAAAAGAGTGATTCAGTGGAAACATGGGTGAGGCAAGTAAGAGA GGTTGCGTATGAAGTCGAGGATATAATAGATGAGTTCATGCATCACAAATATAAGAAACCTCTTGAGAATGGATTCAAGGGTATCGTCGAAGGCGTGGTC AAATTCCCCAAGAACATAACTTCAAGGCATCGAATTTCTTCAAAACTACAAAAGGTCATAGCTAAGGTTCATGAGGTTTCAGAGAGAAGCAAGCGATATG GTTTTGATCAGCTTGATGAGGAGGCTACAAGAAATGTTGCTGGCGATAGGTGGCAACATTATGGAGAATCAGCAACGTTTGTAGATGATGATGATATAGT GGGAATGGAAGAGAGCACGGAGCAGCTGCTTGGATGGTTAATGGAGGATGAACCTCGCCGGACTGTTATTTCAATTGTGGGAATGGGTGGTCTTGGTAAG ACCACTCTAGTCACAAGAGTCTACAACAATCATATAATCAAGAGAGGCTTTGATTGTTGGGCATGGATATCTGTGTCTCAAACATGTGGGACTGGCGAGC TGTTGAGAAGCATCATCAAGGAGCTATTTGGCGCGACATCAGTGGTGATACCAAACAACGTGGGTTCAATGAACTACAGACAGCTTGTGGGTATGCTTAT TGATTATTTGCACCAGAAAAGGTATGTTATTGTCCTAGATGATGTATGGAGCATAGATCTTTGGAGTATAATAAGAACTGCATTTCCCAATAATAGATAT GGAAGCAGAATTATCCTCACAACTAGGAACAAGAATGTAGCTACCTCTGTTGGAATTGGAAGCCGTGTCCATCAGCTTGCGCCTCTTCAAGAGAAAGATG CTTGGGCCCTCTTGTGCAAAAAGGCATTTTGGAATGACACGGATCACCTTTGTCCCAAAGAGCTTAAACATTTAGCTATGGCCATTTTGAAGAAATGTGA GGGCTTGCCACTTGCAATAGTGGCAGTTGGAGGCCTCATGTGTTCAAGAAGCAAGACGGTCGTGGAATGGAAGAAGGTCCTTGAAAGCCTCAATTGGCAA CTAAGCAACAATCCCATGCTGGAACAAGTGAAGGGAATATTGCTGTTGAGCTTCAATGATTTACCATTCTACCTCAAGTATTGTTTCTTATTCTGTTGTG TTTTCCGCGATGGTTACCCAATTAGGAGGAAGAAGCTAATTAGGCTATGGATAGCAGAAGGGTTCATCCGAGAAAGAAAAGGTATGACCTTGGAAGAGAT AGCAGAGGAGTACCTCACAGAACTTGTCCTCCGAAGCCTGATTCAAGTTACAGAGACTAATGATGCTGGGAGGGTGAAGATATGTCGAGTACAAGATGTC ATGCGTGAACTAGCTATGACGATATCTGAAAAGGAGAATTTCTGCACAGCGTATGATGGTTACCCATCAAAGCTAGAAGGAAAAATCCGCAGGTTATCAG TTTATAGTACTGGTGAAAGCATCCGATTGGGCAGTGCCATGTCACACCATCTTCGCTCTTTCTTTGTGTTTCCAACAGATACGTGCTCTTCGTTCTCTCT AGCTGTTGTGTCATCAAAATTCAAATTTCTAAGGGTTCTTGATCTAGAGGGTGTTCCCATTGAGACCATGCCAGGAACACTGGTTGAGTTGTTCAATCTA AGGTACTTGAACTTGAGAGATACAGATATAAGGGAGCTTCCCAAATCGATGGAAAGGCTAAACAAGTTACAAACATTGGATGTATGGAATACCTATATAG AAAGGCTACCAAGTGGAATATCAAAACTATCTAATTTGAGGCATCTGTTTATGCTCCACAAGAACGGTCAGAACTCTCAAACAACAGACGCTCTCATCAG TATGCAGGCTCCGGGGGGGATATGGAACATCCGCAGTTTGCAGACTCTTGCATGTATTGAAGCAGAGAAGGAGCTAATCCAGCAGGTAGGGAACTTGACT GGTCTCAAACGGTTGGAGATTGCAAAATTGAGAGCTGCTGATGGACCAAAGCTGTGCGATTCAATTCAAAAGTTGACAGGCCTCCTCCGTTTAGGTGTGA TGGCAACCAATACAGAAGAGGAACTTCAATTGGAAGCATTACCTTTGACTCCAATATTTCTTCAGAAACTAACCTTGATCGGTCAATTGAATAGGTTACC TCCCTGGATTGGGTCCTTGGAAAATCTAACGCATTTGTATTTGGGTTATTCTCGTCTCCAAGAAGATATACTTTCTTCTATCCATGTACTTTCCAGTCTA GTGTTCCTTGAGCTCAAGAAAGCATATGATGGCAGGGCCTTGCACTTCAAGGAAGGATGGTTCCCTAGACTGAACAAACTGAATCTTGTAGAGCTTGTGC AATTGGATAGCATGAAACTGGAGGAGAATTCGCTGCCAAGCATCCGGGAATTGTATCTAATTCGTTGTCAAGCGATGAAGGCGTTGCCTCAAGGGATTGA GCATCTTAATGGCCTTCAGAAGTTGCATCTGGAGGATATGCATGAGCAATTGTTGCAGAGATTCCGAAGTGGCCTCATTGAAGATCAACAGAAGGTACAG CACATACCAACAATCAAACTCGTCTACATAACAGAACAAACTCGAGTAGTTGAAACACTATGA
AA sequence Show only first row Show all	>Potri.002G216800.1 pacid=42777382 polypeptide=Potri.002G216800.1.p locus=Potri.002G216800 ID=Potri.002G216800.1.v4.1 annot-version=v4.1 MADGAVSFLLDKLTTILLQKASLLGDARDKIEEIKLELESMKSFLRDAERRKEKSDSVETWVRQVREVAYEVEDIIDEFMHHKYKKPLENGFKGIVEGVV KFPKNITSRHRISSKLQKVIAKVHEVSERSKRYGFDQLDEEATRNVAGDRWQHYGESATFVDDDDIVGMEESTEQLLGWLMEDEPRRTVISIVGMGGLGK TTLVTRVYNNHIIKRGFDCWAWISVSQTCGTGELLRSIIKELFGATSVVIPNNVGSMNYRQLVGMLIDYLHQKRYVIVLDDVWSIDLWSIIRTAFPNNRY GSRIILTTRNKNVATSVGIGSRVHQLAPLQEKDAWALLCKKAFWNDTDHLCPKELKHLAMAILKKCEGLPLAIVAVGGLMCSRSKTVVEWKKVLESLNWQ LSNNPMLEQVKGILLLSFNDLPFYLKYCFLFCCVFRDGYPIRRKKLIRLWIAEGFIRERKGMTLEEIAEEYLTELVLRSLIQVTETNDAGRVKICRVQDV MRELAMTISEKENFCTAYDGYPSKLEGKIRRLSVYSTGESIRLGSAMSHHLRSFFVFPTDTCSSFSLAVVSSKFKFLRVLDLEGVPIETMPGTLVELFNL RYLNLRDTDIRELPKSMERLNKLQTLDVWNTYIERLPSGISKLSNLRHLFMLHKNGQNSQTTDALISMQAPGGIWNIRSLQTLACIEAEKELIQQVGNLT GLKRLEIAKLRAADGPKLCDSIQKLTGLLRLGVMATNTEEELQLEALPLTPIFLQKLTLIGQLNRLPPWIGSLENLTHLYLGYSRLQEDILSSIHVLSSL VFLELKKAYDGRALHFKEGWFPRLNKLNLVELVQLDSMKLEENSLPSIRELYLIRCQAMKALPQGIEHLNGLQKLHLEDMHEQLLQRFRSGLIEDQQKVQ HIPTIKLVYITEQTRVVETL

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DESeq2's median of ratios [POPLAR]

Mapped by: StringTie Salmon Order by: Tissue Experiment Show only core collection Show again Show schematic diagram

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Coexpressed genes

Compare expression of checked genes Schematic diagram [FLAX] Schematic diagram [POPLAR]

*If you select 4 or less genes and then press "compare expression", expression will be shown as a graph. If you select more than 4 genes, expresion will be shown as a heat map.
*Color represents relative expression level among samples for each gene.

At best	At TF class	At alias	At description		Locus	MR	r	Symbol	NWA:WT	NWB:WT	NWA:OE-ARK2	NWB:OE-ARK2	NWA:miRNA-ARK2	NWB:miRNA-ARK2	NW 0hr	WT H20	WT-NW	TUA1dEY NW	TUA1dEY+TUB15 NW	TUA1dY+TUB9 NW	Pde NW	NWA:WT GA	NWBWT GA	TW:WT	TW:WT GA	NWA:OE-ARK2 GA	NWB:OE-ARK2 GA	TW:OE-ARK2	TW:OE-ARK2 GA	NWA:miRNA-ARK2 GA	NWB:miRNA-ARK2 GA	TW:miRNA-ARK2	TW:miRNA-ARK2 GA	TW 2hr	TW 8hr	TW 24hr	TW 48hr	TW 96hr	TW 336hr	WT ACC	35S::etr1-1 H20	35S::etr1-1 ACC	LMX5::etr1-1 H20	LMX5::etr1-1 ACC	WT-TW	TUA1dEY TW	TUA1dEY+TUB15 TW	TUA1dY+TUB9 TW	Pde TW	OW:WT	OW:WT GA	OW:OE-ARK2	OW:OE-ARK2 GA	OW:miRNA-ARK2	OW:miRNA-ARK2 GA	OW 2hr	OW 8hr	OW 24hr	OW 48hr	OW 96hr	OW 336hr	Root CTR	Root LongCold	Root LongDrougt	Root LongHeat	Root LongSalt	Root ShortCold	Root ShortDrougt	Root ShortHeat	Root ShortSalt	Ptr root	Leaf CTR	Leaf LongCold	Leaf LongDrougt	Leaf LongHeat	Leaf LongSalt	Leaf ShortCold	Leaf ShortDrougt	Leaf ShortHeat	Leaf ShortSalt	Ptr leaf	Stem CTR	Stem LongCold	Stem LongDrougt	Stem LongHeat	Stem LongSalt	Stem ShortCold	Stem ShortDrougt	Stem ShortHeat	Stem ShortSalt	Ptr shoot	Ptr xylem	Ptr phloem	Ptr fiber	Ptr vessel	Ptr fiber vessel ray
AT3G07040		RPS3, RPM1	RESISTANCE TO PSEUDOMONAS SYRI...		Potri.002G216800 [exp]	0	1	Pt-RPM1.1
AT1G68710			ATPase E1-E2 type family prote...		Potri.008G111200 [exp]	1.41	0.8215
AT3G12740		ALIS1	ALA-interacting subunit 1 (.1)		Potri.010G173900 [exp]	2.44	0.7867
AT5G57580			Calmodulin-binding protein (.1...		Potri.005G020200 [exp]	4.47	0.7516	CBP60.7
					Potri.010G198100 [exp]	5.47	0.7446
AT3G03050		RHD7, ATCSLD3, ...	ROOT HAIR DEFECTIVE 7, KOJAK, ...		Potri.019G049700 [exp]	6.92	0.7475	PtrCSLD1,CESA3.2
					Potri.017G077100 [exp]	7.34	0.7956
AT1G27770		PEA1, ACA1	PLASTID ENVELOPE ATPASE 1, aut...		Potri.014G016600 [exp]	8.94	0.7667	Pt-ACA1.1
AT1G20650		ASG5	ALTERED SEED GERMINATION 5, Pr...		Potri.005G252000 [exp]	9.16	0.7401
AT1G29690		CAD1	constitutively activated cell ...		Potri.011G075500 [exp]	11.40	0.7398
AT2G04305			Magnesium transporter CorA-lik...		Potri.001G285300 [exp]	12.68	0.7474

Compare expression of checked genes

Potri.002G216800 coexpression network

*The number of genes in the network is adjusted within 50 genes.
*Gene name represents symbol(s) of closest Arabidopsis gene if symbol(s) for the gene itself doesn't exist.
*Circle diameter represents the number of connection with other genes within this network.
*Color for gene name represents subnetwork based on the result of network clustering.