Plant FIBer expression Database

External link	JGI Phytozome v13 [genome browser] Popgenie AspWood
Symbol
Arabidopsis homologues Show only best Show top 10	Locus ID BLAST score/e-value TF class Alias TAIR10 short description AT1G76160 794 / 0 SKS5 SKU5 similar 5 (.1) AT4G22010 782 / 0 SKS4 SKU5 similar 4 (.1) AT1G21850 744 / 0 SKS8 SKU5 similar 8 (.1) AT1G21860 744 / 0 SKS7 SKU5 similar 7 (.1) AT1G41830 742 / 0 SKS6 SKU5 SIMILAR 6, SKU5-similar 6 (.1) AT4G38420 697 / 0 SKS9 SKU5 similar 9 (.1) AT4G28090 642 / 0 SKS10 SKU5 similar 10 (.1) AT5G66920 620 / 0 SKS17 SKU5 similar 17 (.1) AT4G37160 565 / 0 SKS15 SKU5 similar 15 (.1) AT2G23630 563 / 0 SKS16 SKU5 similar 16 (.1)
Paralogs Show only best Show top 10	Gene ID BLAST score/e-value At best hit BLAST score/e-value TAIR10 short description Potri.014G154500 [exp] 1010 / 0 AT4G22010 780 / 0.0 SKU5 similar 4 (.1) Potri.004G010100 [exp] 830 / 0 AT4G22010 844 / 0.0 SKU5 similar 4 (.1) Potri.004G180500 [exp] 805 / 0 AT1G76160 880 / 0.0 SKU5 similar 5 (.1) Potri.002G013700 [exp] 799 / 0 AT1G76160 902 / 0.0 SKU5 similar 5 (.1) Potri.005G247700 [exp] 797 / 0 AT1G76160 878 / 0.0 SKU5 similar 5 (.1) Potri.007G038300 [exp] 660 / 0 AT5G66920 822 / 0.0 SKU5 similar 17 (.1) Potri.007G038200 [exp] 588 / 0 AT4G37160 771 / 0.0 SKU5 similar 15 (.1) Potri.001G000500 [exp] 572 / 0 AT1G55570 853 / 0.0 SKU5 similar 12 (.1) Potri.003G224100 [exp] 561 / 0 AT1G55570 855 / 0.0 SKU5 similar 12 (.1)
Flax homologues Show only best Show top 10	Locus ID BLAST score/e-value At best hit BLAST score/e-value TAIR10 short description Lus10030045 [exp] 904 / 0 AT1G76160 796 / 0.0 SKU5 similar 5 (.1) Lus10035282 [exp] 904 / 0 AT1G76160 798 / 0.0 SKU5 similar 5 (.1) Lus10020022 [exp] 796 / 0 AT4G22010 895 / 0.0 SKU5 similar 4 (.1) Lus10015545 [exp] 796 / 0 AT4G22010 889 / 0.0 SKU5 similar 4 (.1) Lus10005649 [exp] 768 / 0 AT1G76160 889 / 0.0 SKU5 similar 5 (.1) Lus10034560 [exp] 760 / 0 AT1G76160 894 / 0.0 SKU5 similar 5 (.1) Lus10021238 [exp] 744 / 0 AT1G76160 892 / 0.0 SKU5 similar 5 (.1) Lus10021832 [exp] 719 / 0 AT1G76160 865 / 0.0 SKU5 similar 5 (.1) Lus10016770 [exp] 658 / 0 AT5G66920 837 / 0.0 SKU5 similar 17 (.1) Lus10022465 [exp] 652 / 0 AT5G66920 829 / 0.0 SKU5 similar 17 (.1)
PFAM info	Clan ID Clan name Pfam ID Pfam name Pfam description CL0026 [poplar] [flax] CU_oxidase PF00394 [poplar] [flax] Cu-oxidase Multicopper oxidase CL0026 [poplar] [flax] CU_oxidase PF07731 [poplar] [flax] Cu-oxidase_2 Multicopper oxidase CL0026 [poplar] [flax] CU_oxidase PF07732 [poplar] [flax] Cu-oxidase_3 Multicopper oxidase
Representative CDS sequence Show only first row Show all	>Potri.002G227600.1 pacid=42779513 polypeptide=Potri.002G227600.1.p locus=Potri.002G227600 ID=Potri.002G227600.1.v4.1 annot-version=v4.1 ATGGTGGATGAGTGTTACAGCAAGAGCATGTGGTCTTTCACGCTAGTGGTCCTGTTGTTAGTGTCATGCACTATTGGGGAAGACCCTTATAGGTTCTACA CATGGAATGTTACTTATGGTGATATCTACCCTCTTGGAGTGAAGCAACAGGGGATATTGATAAATGGGAAGTTTCCAGGCCCACAGATTGAGTCAGTGAC AAATGATAACTTGATTATCAGCGTGTTCAATAGTTTGGATGAACCTTTCCTCCTCTCTTGGAATGGTGTGCAGCAGAGAAGGAATTCATGGCAAGATGGA GTCTATGGTACAAACTGCCCCATCCCACCTGGGAAGAACTTCACTTATGTGCTCCAGGTGAAGGACCAGATTGGTAGCTACTTTTATTTCCCTTCCCTTG GCATGCACAAGGCTGCAGGAGGCTTTGGAGGCTTCAAAATCGCAAGCCGTTCTGTCATTCCTGTACCATTCCCTCCTCCTGCCGGCGATTTCACAATCCT GGCTGGTGATTGGTTCAAGAAGAATCATACAGATTTAAAAGCAATTTTAGATGGTGGCAGTGATCTTCCCTTTCCAGATGGGCTACTCATCAATGGTCGT GGATCAAATGGCTACACATTCACTGTTGATCAAGGCAAGACTTACAGGTTACGGATATCAAATGTGGGGCTCACCACTTCTATCAATTTCAGAATTCAGG GGCATAAAATGTTGCTGGTGGAGGTTGAAGGAACTCACTCACTGCAAAACACTTATGATTCCCTTGATATCCATTTGGGGCAATCCTATTCTGTTTTGGT TACAGCTGATCAAGCAGCACAAGATTACTTCATTGTTGTCTCAACACGCTTCACCTCTCAAGTGCTCACTACGACCTCCATTCTTCATTACAGTAATTCA GCAGGAAGTGTTTCAGATTCTCCGCCCAGTGGACCAACTATTCAGCTTGACTGGTCTGTTGAACAAGCTCGATCCTTGAGGCGAAATCTAACCGCAAGTG GCCCTAGACCTAACCCTCAAGGTTCTTACCACTATGGATTGATCAACACAACTCATACAGTTAGACTTCAGAACTCTGCTCCAATTATTAATGGCAAGCA GAGGTATGCTGTCAATAGTGTGTCCTTCATCCCTGCTGATACTCCCCTTAAACTTGCGGACCACTTCAATATCCCTGGAGTTTTCTCCCTAGGAAGCATC TCGAACAATCCCACTGGTGGTGGTGCTTACCGCCAGACTTCTGTCATGGCTGCTGATTTCAGAGGTTATGCTGAGATTGTTTTTGAGAATCCAGAAGATA ATGTGCAGTCTTGGCACATTGATGGCCACAACTTCTTTGTTGTGGGGATGGATGGAGGGCAGTGGTCACCTGCAAGCAGATTAACTTACAATCTGAGAGA CACAATTTCTCGTTGCACTGTTCAGGTCTATCCGGAGTCATGGACTGCAGTTTACATGCCCTTAGACAATGTGGGAATGTGGAACGTAAGGTCTGAGAAC TGGGCACGCCAGTACTTAGGACAACAATTCTATCTTCGAGTCTACTCCCCAGCAAATTCCTGGAGAGATGAATATCCAATCCCCACAAATGCTCTTCTTT GTGGTCGAGCTGCAGGACGTCTAACTCGGCCTGTATAG
AA sequence Show only first row Show all	>Potri.002G227600.1 pacid=42779513 polypeptide=Potri.002G227600.1.p locus=Potri.002G227600 ID=Potri.002G227600.1.v4.1 annot-version=v4.1 MVDECYSKSMWSFTLVVLLLVSCTIGEDPYRFYTWNVTYGDIYPLGVKQQGILINGKFPGPQIESVTNDNLIISVFNSLDEPFLLSWNGVQQRRNSWQDG VYGTNCPIPPGKNFTYVLQVKDQIGSYFYFPSLGMHKAAGGFGGFKIASRSVIPVPFPPPAGDFTILAGDWFKKNHTDLKAILDGGSDLPFPDGLLINGR GSNGYTFTVDQGKTYRLRISNVGLTTSINFRIQGHKMLLVEVEGTHSLQNTYDSLDIHLGQSYSVLVTADQAAQDYFIVVSTRFTSQVLTTTSILHYSNS AGSVSDSPPSGPTIQLDWSVEQARSLRRNLTASGPRPNPQGSYHYGLINTTHTVRLQNSAPIINGKQRYAVNSVSFIPADTPLKLADHFNIPGVFSLGSI SNNPTGGGAYRQTSVMAADFRGYAEIVFENPEDNVQSWHIDGHNFFVVGMDGGQWSPASRLTYNLRDTISRCTVQVYPESWTAVYMPLDNVGMWNVRSEN WARQYLGQQFYLRVYSPANSWRDEYPIPTNALLCGRAAGRLTRPV

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DESeq2's median of ratios [POPLAR]

Mapped by: StringTie Salmon Order by: Tissue Experiment Show only core collection Show again Show schematic diagram

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Coexpressed genes

Compare expression of checked genes Schematic diagram [FLAX] Schematic diagram [POPLAR]

*If you select 4 or less genes and then press "compare expression", expression will be shown as a graph. If you select more than 4 genes, expresion will be shown as a heat map.
*Color represents relative expression level among samples for each gene.

At best	At TF class	At alias	At description		Locus	MR	r	Symbol	NWA:WT	NWB:WT	NWA:OE-ARK2	NWB:OE-ARK2	NWA:miRNA-ARK2	NWB:miRNA-ARK2	NW 0hr	WT H20	WT-NW	TUA1dEY NW	TUA1dEY+TUB15 NW	TUA1dY+TUB9 NW	Pde NW	NWA:WT GA	NWBWT GA	TW:WT	TW:WT GA	NWA:OE-ARK2 GA	NWB:OE-ARK2 GA	TW:OE-ARK2	TW:OE-ARK2 GA	NWA:miRNA-ARK2 GA	NWB:miRNA-ARK2 GA	TW:miRNA-ARK2	TW:miRNA-ARK2 GA	TW 2hr	TW 8hr	TW 24hr	TW 48hr	TW 96hr	TW 336hr	WT ACC	35S::etr1-1 H20	35S::etr1-1 ACC	LMX5::etr1-1 H20	LMX5::etr1-1 ACC	WT-TW	TUA1dEY TW	TUA1dEY+TUB15 TW	TUA1dY+TUB9 TW	Pde TW	OW:WT	OW:WT GA	OW:OE-ARK2	OW:OE-ARK2 GA	OW:miRNA-ARK2	OW:miRNA-ARK2 GA	OW 2hr	OW 8hr	OW 24hr	OW 48hr	OW 96hr	OW 336hr	Root CTR	Root LongCold	Root LongDrougt	Root LongHeat	Root LongSalt	Root ShortCold	Root ShortDrougt	Root ShortHeat	Root ShortSalt	Ptr root	Leaf CTR	Leaf LongCold	Leaf LongDrougt	Leaf LongHeat	Leaf LongSalt	Leaf ShortCold	Leaf ShortDrougt	Leaf ShortHeat	Leaf ShortSalt	Ptr leaf	Stem CTR	Stem LongCold	Stem LongDrougt	Stem LongHeat	Stem LongSalt	Stem ShortCold	Stem ShortDrougt	Stem ShortHeat	Stem ShortSalt	Ptr shoot	Ptr xylem	Ptr phloem	Ptr fiber	Ptr vessel	Ptr fiber vessel ray
AT1G76160		SKS5	SKU5 similar 5 (.1)		Potri.002G227600 [exp]	0	1
AT3G50150			Plant protein of unknown funct...		Potri.013G146700 [exp]	1.00	0.9606
AT5G45540			Protein of unknown function (D...		Potri.006G010900 [exp]	1.41	0.9592
AT5G10770			Eukaryotic aspartyl protease f...		Potri.018G014800 [exp]	2.44	0.9090
AT3G44735		PSK1, ATPSK3	PHYTOSULFOKINE 3 PRECURSOR (.1...		Potri.009G148900 [exp]	3.46	0.9169	Pt-PSK6.1
AT2G40435			unknown protein		Potri.019G126800 [exp]	5.09	0.8998
					Potri.001G293200 [exp]	6.00	0.9008
AT5G62940	DOF	AtDof5.6, HCA2	HIGH CAMBIAL ACTIVITY2, DNA BI...		Potri.012G081300 [exp]	7.93	0.9321
AT5G62940	DOF	AtDof5.6, HCA2	HIGH CAMBIAL ACTIVITY2, DNA BI...		Potri.015G077100 [exp]	8.36	0.8979
AT4G31980			unknown protein		Potri.013G146600 [exp]	9.48	0.9101
					Potri.001G049700 [exp]	11.53	0.8851

Compare expression of checked genes

Potri.002G227600 coexpression network

*The number of genes in the network is adjusted within 50 genes.
*Gene name represents symbol(s) of closest Arabidopsis gene if symbol(s) for the gene itself doesn't exist.
*Circle diameter represents the number of connection with other genes within this network.
*Color for gene name represents subnetwork based on the result of network clustering.