Plant FIBer expression Database

External link	JGI Phytozome v13 [genome browser] Popgenie AspWood
Symbol
Arabidopsis homologues Show only best Show top 10	Locus ID BLAST score/e-value TF class Alias TAIR10 short description AT5G16740 399 / 1e-136 Transmembrane amino acid transporter family protein (.1) AT5G02170 221 / 2e-66 Transmembrane amino acid transporter family protein (.1.2) AT5G02180 219 / 1e-65 Transmembrane amino acid transporter family protein (.1) AT3G54830 213 / 5e-63 Transmembrane amino acid transporter family protein (.1) AT2G41190 211 / 1e-62 Transmembrane amino acid transporter family protein (.1) AT3G09340 209 / 6e-62 Transmembrane amino acid transporter family protein (.1) AT2G39130 208 / 3e-61 Transmembrane amino acid transporter family protein (.1) AT3G09330 203 / 1e-59 Transmembrane amino acid transporter family protein (.1) AT5G15240 201 / 1e-59 Transmembrane amino acid transporter family protein (.1.2) AT3G28960 185 / 7e-54 Transmembrane amino acid transporter family protein (.1)
Paralogs Show only best Show top 10	Gene ID BLAST score/e-value At best hit BLAST score/e-value TAIR10 short description Potri.002G233200 [exp] 769 / 0 AT5G16740 416 / 5e-143 Transmembrane amino acid transporter family protein (.1) Potri.014G146700 [exp] 657 / 0 AT5G16740 430 / 3e-148 Transmembrane amino acid transporter family protein (.1) Potri.016G100300 [exp] 221 / 4e-66 AT5G02180 587 / 0.0 Transmembrane amino acid transporter family protein (.1) Potri.010G226000 [exp] 209 / 2e-61 AT2G39130 708 / 0.0 Transmembrane amino acid transporter family protein (.1) Potri.008G036300 [exp] 206 / 2e-60 AT2G39130 691 / 0.0 Transmembrane amino acid transporter family protein (.1) Potri.010G169000 [exp] 198 / 9e-59 AT3G28960 381 / 2e-130 Transmembrane amino acid transporter family protein (.1) Potri.008G086500 [exp] 195 / 1e-57 AT3G28960 411 / 4e-142 Transmembrane amino acid transporter family protein (.1) Potri.017G083700 [exp] 191 / 7e-56 AT3G28960 456 / 2e-159 Transmembrane amino acid transporter family protein (.1) Potri.017G083500 [exp] 189 / 2e-55 AT5G15240 448 / 4e-156 Transmembrane amino acid transporter family protein (.1.2)
Flax homologues Show only best Show top 10	Locus ID BLAST score/e-value At best hit BLAST score/e-value TAIR10 short description Lus10035738 [exp] 440 / 2e-152 AT5G16740 503 / 3e-177 Transmembrane amino acid transporter family protein (.1) Lus10010855 [exp] 214 / 9e-63 AT5G02170 501 / 2e-171 Transmembrane amino acid transporter family protein (.1.2) Lus10005239 [exp] 198 / 1e-58 AT5G15240 509 / 4e-180 Transmembrane amino acid transporter family protein (.1.2) Lus10012824 [exp] 196 / 5e-58 AT5G15240 425 / 3e-147 Transmembrane amino acid transporter family protein (.1.2) Lus10003817 [exp] 196 / 3e-56 AT2G41190 615 / 0.0 Transmembrane amino acid transporter family protein (.1) Lus10030683 [exp] 192 / 3e-56 AT5G15240 510 / 2e-180 Transmembrane amino acid transporter family protein (.1.2) Lus10010457 [exp] 192 / 3e-53 AT5G04140 2772 / 0.0 FERREDOXIN-DEPENDENT GLUTAMATE SYNTHASE 1, FERREDOXIN-DEPENDENT GLUTAMATE SYNTHASE, glutamate synthase 1 (.1.2) Lus10030469 [exp] 183 / 1e-52 AT5G15240 405 / 4e-139 Transmembrane amino acid transporter family protein (.1.2) Lus10024374 [exp] 181 / 5e-51 AT5G02180 446 / 4e-152 Transmembrane amino acid transporter family protein (.1) Lus10039190 [exp] 177 / 1e-49 AT2G39130 652 / 0.0 Transmembrane amino acid transporter family protein (.1)
PFAM info	Clan ID Clan name Pfam ID Pfam name Pfam description CL0062 [poplar] [flax] APC PF01490 [poplar] [flax] Aa_trans Transmembrane amino acid transporter protein
Representative CDS sequence Show only first row Show all	>Potri.002G233100.2 pacid=42777485 polypeptide=Potri.002G233100.2.p locus=Potri.002G233100 ID=Potri.002G233100.2.v4.1 annot-version=v4.1 ATGTGGAACCAGATACAGAAGTCCATTGGGAAATTACCCTGCCCAGAAGCAGACAGTCTCAATCGTCAGAGTATTCAAGTTGAGACTGAGACAGTTCATG GTGAGAAACTGGCTCTGCAGTGCATGGGCTGCGATGCTTGTGTAGAGAATAAAGGGTGCATGTGTGATCACAGCACCCAAGATTTAAAGAGTGTTGTAAA TGAAGCAGATGTTGAGGATCATACCGAGGCTAATAGTTCCTTTGCGCATTCTGTCATCAACATGATTGGAATGCTCATAGTATCTGCTCCATATGCTTTA GAAAATGGAGGATGGGCTTCTGCATTCTTGCTGGTTGGAATAGGTGTAATATGTGCATATACATCCCTTCTGCTTGGAAAATGCCTTGAAAAGAGTCCCA GATCAAGGAGCTACGCTGATATTGGACAGCATGCATTTGGCTCCAGGGGAAGAGTTTTGGCTACGACCTTCATTGATTTGGAGATTTTCATGACCCTAGT ATCCTTTACCATATCACTGCATGACAACCTTATAACAGTATTTGCAGGGACACAACTTAGGCTACCATTATGGACCAAATTATCTACATCTCAGTTACTA ACCATGATCGGGGTGCTGATAGCACTTCCTAGTCTGTGGCTGACAGATCTCTCTTCCATATCTTTCCTTTCATTCGGCGGCATTCTCATGTCCATTATCA TTTTCACTTCTGTGGCATGCATTGCCATCTTCCAAGTTGTGAAAGCTAATCATAGAATACCTGTTCTCCACCTCCATAAGATTCCTGCCATATCTGGCCT TTACATCTTCTGTTATGCTGGCCACATCGTGTTTCCCAACTTGTATAAATCCATGAAGGATCCATCTAAGTTTACCAAGGTGTCTATAGTGAGCTTCGCT TCGGTGATAGCACTTTACACATCATTAGCATTCACGGGAGCCAAATTATTCGGCCCTGAAGTAAGCTCTCAAATAACCCTAAGCATGCCTCGACATCTTA TCATTACAAAGATTGCACTATGGGCAACCGTGATAACACCCATGACCAAATATGCCCTTATGTTTGCGCCCTTCTCCGTCCAGATAGAACACAGCCTTCC TTCTTCTTTTAGTTCCAGGACCAAGACAATCATAAGAGGCGCTCATTGCATAGTTTTCCCCTGTGCCTTCTATATCAAGATTTCATCGGCTCAATTATCT AAGTTTTCCCTGATCCTAAATGCGACCCTTCTTGCATTTGGGCTACTTCTTGGGGTCGCTGGGACCATATCCTCTTCAAAGTCGATCTTTACAAGTCTAA AAAGAGATCACTCAGCCTGA
AA sequence Show only first row Show all	>Potri.002G233100.2 pacid=42777485 polypeptide=Potri.002G233100.2.p locus=Potri.002G233100 ID=Potri.002G233100.2.v4.1 annot-version=v4.1 MWNQIQKSIGKLPCPEADSLNRQSIQVETETVHGEKLALQCMGCDACVENKGCMCDHSTQDLKSVVNEADVEDHTEANSSFAHSVINMIGMLIVSAPYAL ENGGWASAFLLVGIGVICAYTSLLLGKCLEKSPRSRSYADIGQHAFGSRGRVLATTFIDLEIFMTLVSFTISLHDNLITVFAGTQLRLPLWTKLSTSQLL TMIGVLIALPSLWLTDLSSISFLSFGGILMSIIIFTSVACIAIFQVVKANHRIPVLHLHKIPAISGLYIFCYAGHIVFPNLYKSMKDPSKFTKVSIVSFA SVIALYTSLAFTGAKLFGPEVSSQITLSMPRHLIITKIALWATVITPMTKYALMFAPFSVQIEHSLPSSFSSRTKTIIRGAHCIVFPCAFYIKISSAQLS KFSLILNATLLAFGLLLGVAGTISSSKSIFTSLKRDHSA

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DESeq2's median of ratios [POPLAR]

Mapped by: StringTie Salmon Order by: Tissue Experiment Show only core collection Show again Show schematic diagram

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Coexpressed genes

Compare expression of checked genes Schematic diagram [FLAX] Schematic diagram [POPLAR]

*If you select 4 or less genes and then press "compare expression", expression will be shown as a graph. If you select more than 4 genes, expresion will be shown as a heat map.
*Color represents relative expression level among samples for each gene.

At best	At TF class	At alias	At description		Locus	MR	r	Symbol	NWA:WT	NWB:WT	NWA:OE-ARK2	NWB:OE-ARK2	NWA:miRNA-ARK2	NWB:miRNA-ARK2	NW 0hr	WT H20	WT-NW	TUA1dEY NW	TUA1dEY+TUB15 NW	TUA1dY+TUB9 NW	Pde NW	NWA:WT GA	NWBWT GA	TW:WT	TW:WT GA	NWA:OE-ARK2 GA	NWB:OE-ARK2 GA	TW:OE-ARK2	TW:OE-ARK2 GA	NWA:miRNA-ARK2 GA	NWB:miRNA-ARK2 GA	TW:miRNA-ARK2	TW:miRNA-ARK2 GA	TW 2hr	TW 8hr	TW 24hr	TW 48hr	TW 96hr	TW 336hr	WT ACC	35S::etr1-1 H20	35S::etr1-1 ACC	LMX5::etr1-1 H20	LMX5::etr1-1 ACC	WT-TW	TUA1dEY TW	TUA1dEY+TUB15 TW	TUA1dY+TUB9 TW	Pde TW	OW:WT	OW:WT GA	OW:OE-ARK2	OW:OE-ARK2 GA	OW:miRNA-ARK2	OW:miRNA-ARK2 GA	OW 2hr	OW 8hr	OW 24hr	OW 48hr	OW 96hr	OW 336hr	Root CTR	Root LongCold	Root LongDrougt	Root LongHeat	Root LongSalt	Root ShortCold	Root ShortDrougt	Root ShortHeat	Root ShortSalt	Ptr root	Leaf CTR	Leaf LongCold	Leaf LongDrougt	Leaf LongHeat	Leaf LongSalt	Leaf ShortCold	Leaf ShortDrougt	Leaf ShortHeat	Leaf ShortSalt	Ptr leaf	Stem CTR	Stem LongCold	Stem LongDrougt	Stem LongHeat	Stem LongSalt	Stem ShortCold	Stem ShortDrougt	Stem ShortHeat	Stem ShortSalt	Ptr shoot	Ptr xylem	Ptr phloem	Ptr fiber	Ptr vessel	Ptr fiber vessel ray
AT5G16740			Transmembrane amino acid trans...		Potri.002G233100 [exp]	0	1
AT5G16740			Transmembrane amino acid trans...		Potri.002G233200 [exp]	1.00	0.9711
AT4G32300		SD2-5	S-domain-2 5 (.1)		Potri.011G004000 [exp]	2.44	0.8646
AT3G18280			Bifunctional inhibitor/lipid-t...		Potri.017G118700 [exp]	2.82	0.8125
					Potri.003G026700 [exp]	9.00	0.8531
AT4G15550		IAGLU	indole-3-acetate beta-D-glucos...		Potri.016G052500 [exp]	10.58	0.7605
					Potri.016G011250 [exp]	10.90	0.8032
AT5G45160			Root hair defective 3 GTP-bind...		Potri.012G116700 [exp]	10.95	0.8043
					Potri.019G089001 [exp]	12.72	0.6829
AT5G23570		SGS3, ATSGS3	SUPPRESSOR OF GENE SILENCING 3...		Potri.003G188100 [exp]	17.23	0.7762
					Potri.001G387000 [exp]	17.32	0.7779

Compare expression of checked genes

Potri.002G233100 coexpression network

*The number of genes in the network is adjusted within 50 genes.
*Gene name represents symbol(s) of closest Arabidopsis gene if symbol(s) for the gene itself doesn't exist.
*Circle diameter represents the number of connection with other genes within this network.
*Color for gene name represents subnetwork based on the result of network clustering.