Plant FIBer expression Database

External link	JGI Phytozome v13 [genome browser] Popgenie AspWood
Symbol
Arabidopsis homologues Show only best Show top 10	Locus ID BLAST score/e-value TF class Alias TAIR10 short description AT4G13040 159 / 2e-48 AP2_ERF Integrase-type DNA-binding superfamily protein (.1.2.3)
Paralogs Show only best Show top 10	Gene ID BLAST score/e-value At best hit BLAST score/e-value TAIR10 short description Potri.006G132400 [exp] 45 / 2e-05 AT2G28550 307 / 2e-99 TARGET OF EARLY ACTIVATION TAGGED \(EAT\) 1, related to AP2.7 (.1.2.3) Potri.008G045300 [exp] 45 / 3e-05 AT2G28550 292 / 1e-93 TARGET OF EARLY ACTIVATION TAGGED \(EAT\) 1, related to AP2.7 (.1.2.3) Potri.016G084500 [exp] 41 / 0.0004 AT2G28550 306 / 6e-99 TARGET OF EARLY ACTIVATION TAGGED \(EAT\) 1, related to AP2.7 (.1.2.3)
Flax homologues Show only best Show top 10	Locus ID BLAST score/e-value At best hit BLAST score/e-value TAIR10 short description Lus10022769 [exp] 214 / 6e-70 AT4G13040 150 / 1e-45 Integrase-type DNA-binding superfamily protein (.1.2.3) Lus10011836 [exp] 204 / 8e-66 AT4G13040 149 / 4e-45 Integrase-type DNA-binding superfamily protein (.1.2.3) Lus10013268 [exp] 40 / 0.0008 AT3G54320 275 / 3e-90 WRINKLED 1, WRINKLED, ACTIVATOR OF SPO\(MIN\)::LUC1, Integrase-type DNA-binding superfamily protein (.1.2.3) Lus10030792 [exp] 40 / 0.001 AT3G54320 280 / 6e-90 WRINKLED 1, WRINKLED, ACTIVATOR OF SPO\(MIN\)::LUC1, Integrase-type DNA-binding superfamily protein (.1.2.3)
PFAM info	Clan ID Clan name Pfam ID Pfam name Pfam description CL0081 [poplar] [flax] MBD-like PF00847 [poplar] [flax] AP2 AP2 domain
Representative CDS sequence Show only first row Show all	>Potri.002G246100.2 pacid=42777278 polypeptide=Potri.002G246100.2.p locus=Potri.002G246100 ID=Potri.002G246100.2.v4.1 annot-version=v4.1 ATGGTTAGCTTACGGAGGCGTAAACTCTTGGGACTTTGTGCTGGAAGAAGTTCTTTCCTGACTCCACTTCCTCGATTTTTTGACAACGGAACTGCTCCTG TAGGTTCCACTCAGAATGGCAGGTCTGTCAGTGTGCATCCTCTGCCATCAGATGATGCCAACCAGCCAGAGGAGAAAACCATTGCAAAAGTGGGAGCTGG CTCTTCAAATGTTTCGGCTTCTAGCTCGTCAAAAGAGCAGCGATCTCAAGCATATCCAGAGCAACCAGTTAAACGCAGAAAGAGACACAGGAGGAAACAT GTTCAGAACCAGGAACCATGCCTGATGAGAGGCGTCTATTTTAAAAATATGAAATGGCAGGCAGCAATTAAAGTTGACAAGAAGCAGATTCACCTAGGGA CTGTTGGTTCTCAAGAAGAGGCTGCTCGTTTGTATGACAGGGCTGCTTTCATGTGCGGGAGGGAGCCCAATTTTGAGCTCTCAGAGGAGGAAAAGCAAGA ACTTAGGAAATTCAAGTGGGATGAATTTTTGGCAATCACTCGCAGTGCAATTAACAATAAAAAACACAAGAGAAGGATCGGGGCAGGTTTGCAGAAGAGA TCAGAGACCACATTGCAGGATGGTGACTGGGATGCCAAGGACGGACTCAATGGCTTTTCAGCTTCAGAAGATGTGGAACCAGACTCATCAGCCTCTTGA
AA sequence Show only first row Show all	>Potri.002G246100.2 pacid=42777278 polypeptide=Potri.002G246100.2.p locus=Potri.002G246100 ID=Potri.002G246100.2.v4.1 annot-version=v4.1 MVSLRRRKLLGLCAGRSSFLTPLPRFFDNGTAPVGSTQNGRSVSVHPLPSDDANQPEEKTIAKVGAGSSNVSASSSSKEQRSQAYPEQPVKRRKRHRRKH VQNQEPCLMRGVYFKNMKWQAAIKVDKKQIHLGTVGSQEEAARLYDRAAFMCGREPNFELSEEEKQELRKFKWDEFLAITRSAINNKKHKRRIGAGLQKR SETTLQDGDWDAKDGLNGFSASEDVEPDSSAS

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DESeq2's median of ratios [POPLAR]

Mapped by: StringTie Salmon Order by: Tissue Experiment Show only core collection Show again Show schematic diagram

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Coexpressed genes

Compare expression of checked genes Schematic diagram [FLAX] Schematic diagram [POPLAR]

*If you select 4 or less genes and then press "compare expression", expression will be shown as a graph. If you select more than 4 genes, expresion will be shown as a heat map.
*Color represents relative expression level among samples for each gene.

At best	At TF class	At alias	At description		Locus	MR	r	Symbol	NWA:WT	NWB:WT	NWA:OE-ARK2	NWB:OE-ARK2	NWA:miRNA-ARK2	NWB:miRNA-ARK2	NW 0hr	WT H20	WT-NW	TUA1dEY NW	TUA1dEY+TUB15 NW	TUA1dY+TUB9 NW	Pde NW	NWA:WT GA	NWBWT GA	TW:WT	TW:WT GA	NWA:OE-ARK2 GA	NWB:OE-ARK2 GA	TW:OE-ARK2	TW:OE-ARK2 GA	NWA:miRNA-ARK2 GA	NWB:miRNA-ARK2 GA	TW:miRNA-ARK2	TW:miRNA-ARK2 GA	TW 2hr	TW 8hr	TW 24hr	TW 48hr	TW 96hr	TW 336hr	WT ACC	35S::etr1-1 H20	35S::etr1-1 ACC	LMX5::etr1-1 H20	LMX5::etr1-1 ACC	WT-TW	TUA1dEY TW	TUA1dEY+TUB15 TW	TUA1dY+TUB9 TW	Pde TW	OW:WT	OW:WT GA	OW:OE-ARK2	OW:OE-ARK2 GA	OW:miRNA-ARK2	OW:miRNA-ARK2 GA	OW 2hr	OW 8hr	OW 24hr	OW 48hr	OW 96hr	OW 336hr	Root CTR	Root LongCold	Root LongDrougt	Root LongHeat	Root LongSalt	Root ShortCold	Root ShortDrougt	Root ShortHeat	Root ShortSalt	Ptr root	Leaf CTR	Leaf LongCold	Leaf LongDrougt	Leaf LongHeat	Leaf LongSalt	Leaf ShortCold	Leaf ShortDrougt	Leaf ShortHeat	Leaf ShortSalt	Ptr leaf	Stem CTR	Stem LongCold	Stem LongDrougt	Stem LongHeat	Stem LongSalt	Stem ShortCold	Stem ShortDrougt	Stem ShortHeat	Stem ShortSalt	Ptr shoot	Ptr xylem	Ptr phloem	Ptr fiber	Ptr vessel	Ptr fiber vessel ray
AT4G13040	AP2_ERF		Integrase-type DNA-binding sup...		Potri.002G246100 [exp]	0	1
					Potri.007G074433 [exp]	6.00	0.8580
AT5G13950			unknown protein		Potri.014G144100 [exp]	9.27	0.8313
AT4G11400	ARID		ARID/BRIGHT DNA-binding domain...		Potri.003G129800 [exp]	13.56	0.8297
AT1G01730			unknown protein		Potri.015G145000 [exp]	13.74	0.8069
AT1G12700		RPF1	RNA processing factor 1, ATP b...		Potri.019G021200 [exp]	18.73	0.7808
AT5G11310			Pentatricopeptide repeat (PPR)...		Potri.006G247400 [exp]	20.49	0.7904
AT5G62640		AtELF5, ELF5	EARLY FLOWERING 5, proline-ric...		Potri.015G090200 [exp]	23.04	0.8301	ELF5.2
AT1G74120			Mitochondrial transcription te...		Potri.018G051600 [exp]	23.23	0.8192
AT1G55480		ZKT	protein containing PDZ domain,...		Potri.001G002700 [exp]	29.39	0.7504
AT2G37035			unknown protein		Potri.016G091400 [exp]	33.16	0.7971

Compare expression of checked genes

Potri.002G246100 coexpression network

*The number of genes in the network is adjusted within 50 genes.
*Gene name represents symbol(s) of closest Arabidopsis gene if symbol(s) for the gene itself doesn't exist.
*Circle diameter represents the number of connection with other genes within this network.
*Color for gene name represents subnetwork based on the result of network clustering.