Plant FIBer expression Database

External link	JGI Phytozome v13 [genome browser] Popgenie AspWood
Symbol
Arabidopsis homologues Show only best Show top 10	Locus ID BLAST score/e-value TF class Alias TAIR10 short description AT4G28610 333 / 3e-110 GARP ATPHR1, PHR1 phosphate starvation response 1 (.1) AT5G29000 280 / 2e-89 GARP PHL1 PHR1-like 1, Homeodomain-like superfamily protein (.1.2.3.4) AT3G04450 251 / 8e-78 GARP Homeodomain-like superfamily protein (.1.2) AT2G20400 209 / 1e-62 GARP myb-like HTH transcriptional regulator family protein (.1) AT5G06800 177 / 1e-50 GARP myb-like HTH transcriptional regulator family protein (.1.2) AT2G01060 169 / 9e-49 GARP myb-like HTH transcriptional regulator family protein (.1.2) AT3G13040 161 / 4e-44 GARP myb-like HTH transcriptional regulator family protein (.1.2) AT3G24120 144 / 2e-39 GARP Homeodomain-like superfamily protein (.1.2) AT4G13640 143 / 6e-39 GARP UNE16 unfertilized embryo sac 16, Homeodomain-like superfamily protein (.1.2) AT3G04030 139 / 2e-36 GARP Homeodomain-like superfamily protein (.1.2.3)
Paralogs Show only best Show top 10	Gene ID BLAST score/e-value At best hit BLAST score/e-value TAIR10 short description Potri.019G020900 [exp] 397 / 7e-135 AT5G29000 306 / 4e-101 PHR1-like 1, Homeodomain-like superfamily protein (.1.2.3.4) Potri.013G048000 [exp] 390 / 1e-131 AT5G29000 321 / 4e-106 PHR1-like 1, Homeodomain-like superfamily protein (.1.2.3.4) Potri.006G191000 [exp] 195 / 5e-57 AT5G06800 252 / 2e-80 myb-like HTH transcriptional regulator family protein (.1.2) Potri.016G047900 [exp] 190 / 2e-55 AT5G06800 233 / 3e-73 myb-like HTH transcriptional regulator family protein (.1.2) Potri.014G000700 [exp] 178 / 2e-50 AT3G13040 308 / 6e-101 myb-like HTH transcriptional regulator family protein (.1.2) Potri.007G003200 [exp] 178 / 6e-50 AT3G13040 330 / 1e-108 myb-like HTH transcriptional regulator family protein (.1.2) Potri.006G000800 [exp] 168 / 1e-47 AT2G01060 321 / 1e-109 myb-like HTH transcriptional regulator family protein (.1.2) Potri.016G001100 [exp] 163 / 4e-46 AT2G01060 318 / 5e-109 myb-like HTH transcriptional regulator family protein (.1.2) Potri.001G228500 [exp] 151 / 1e-40 AT5G06800 179 / 3e-52 myb-like HTH transcriptional regulator family protein (.1.2)
Flax homologues Show only best Show top 10	Locus ID BLAST score/e-value At best hit BLAST score/e-value TAIR10 short description Lus10022885 [exp] 448 / 1e-154 AT4G28610 299 / 2e-97 phosphate starvation response 1 (.1) Lus10024938 [exp] 443 / 2e-152 AT4G28610 314 / 2e-103 phosphate starvation response 1 (.1) Lus10022886 [exp] 437 / 4e-150 AT4G28610 310 / 7e-102 phosphate starvation response 1 (.1) Lus10008197 [exp] 362 / 6e-121 AT5G29000 318 / 3e-105 PHR1-like 1, Homeodomain-like superfamily protein (.1.2.3.4) Lus10029607 [exp] 295 / 2e-94 AT5G29000 279 / 2e-89 PHR1-like 1, Homeodomain-like superfamily protein (.1.2.3.4) Lus10032778 [exp] 277 / 5e-88 AT5G29000 272 / 2e-87 PHR1-like 1, Homeodomain-like superfamily protein (.1.2.3.4) Lus10027958 [exp] 252 / 5e-79 AT5G29000 132 / 7e-35 PHR1-like 1, Homeodomain-like superfamily protein (.1.2.3.4) Lus10035705 [exp] 173 / 5e-48 AT3G13040 372 / 4e-125 myb-like HTH transcriptional regulator family protein (.1.2) Lus10039124 [exp] 162 / 5e-46 AT2G01060 350 / 6e-122 myb-like HTH transcriptional regulator family protein (.1.2) Lus10037296 [exp] 166 / 1e-45 AT3G13040 364 / 5e-122 myb-like HTH transcriptional regulator family protein (.1.2)
PFAM info	Clan ID Clan name Pfam ID Pfam name Pfam description CL0123 [poplar] [flax] HTH PF00249 [poplar] [flax] Myb_DNA-binding Myb-like DNA-binding domain CL0123 [poplar] [flax] PF14379 [poplar] [flax] Myb_CC_LHEQLE MYB-CC type transfactor, LHEQLE motif
Representative CDS sequence Show only first row Show all	>Potri.002G257800.11 pacid=42779615 polypeptide=Potri.002G257800.11.p locus=Potri.002G257800 ID=Potri.002G257800.11.v4.1 annot-version=v4.1 ATGACCTTTCCAGTGTCCCACTATTGTGAACCAATAAGAAGGGTGCTTTCAGAAGCAATGGAGGGACGCCCAGCTTTTAGCATTCAGAGAGCAGGTGCAA AGCAGCTTGGTAACCTTGGGGTGTCTGGAACACTGTCTTCATCTTTACCAGTGGTTCCAACACCTCTAGAAGAGACATACTCCAAGTTACCAGGCTGTCA ACAGGTTTCCATGGAAAGGGAGCTTATGACCAGGCCTCTTGTGCATGCAAGTCATTTGCCCTCTAACAATGGAGTAGTTGGACACTTATTTTCTTCTTCT GCGAGCTTCTCAACAGACCTTCAGTACTCTTCTGTCACACCCCGGGAGAAACATTCAAGAAATACTCCATTTATTTCCCAGTCATCAGCAAATGCAGGAG CTTTGCTGATGTCACAATCTTCTCCATCAGCATTACTTCAATCAACAACAACTAGTCATTATGTAAATGAAAACAGTGCTTCATGGTGTCCAGAATCACC GCCGGGTTTTCTTGACTTTCCCACTAACACTACTGTTCAAAATAATCAGATAGAAAGCAATAGTTGTGCTGGTGTCATGGCATCAGAAGAATTTGGTAAA CGAAATGATTGGCAGGAATGGGCAGACCAGCTAATTACTGATGATGATGCTTTGACAACTAATTGGAATGAGCTTCTGGCTGACACCAGCATTGTGGACA TGGAACCAAAGATGGCATACCAGGTCTCCAAACCATCTTCAAACACTCCAGTTCAACACTCCCAAGGTCACCTGCAGCTTCCATCCCTATCTGCAGAAAT TCGCCCAGTTCTCACCCCCACTTCCTCAGCAAACAGTGCACCAACGAAGCCACGCATGCGTTGGACACCAGAACTTCATGAAGCTTTTGTGGAGGCTGTC AACAACCTTGGTGGAGCTACTCCAAAAGGCGTGCTGAAGCTGATGAAAGTTGACAGCTTGACTATTTATCATGTAAAAAGCCACTTGCAGAAATACCGAA CAGCCAGATACAGACCAGAGTCATCAGAGGGATCCTCTGAGAAAAGATTGACATCTATTGATGAAATATCATCTCTTGACTTGAAAACAGGCATTGAAAT CACTGAAGCTCTACGATTACAGATGGAAGTTCAGAAACGACTGCATGAACAGCTTGAGATCCAACGAAATTTACAGTTACGAATAGAAGAACAGGGGAGG CACCTTCAAATGATGTTTGAGAAACAATGCAAATCAGGTATTGACGTTGACAAGTTGAAGGCAGCTTCATCTGCTTTGGAAAATCCCTCTACTCTGTCCT CAGATGCAATCCAGGACTCCCCTGCCAAAAATGATTTGGAAACCGCCCAGGTAGACTGTGGCAAGACACCAACTGACACAATTTATGCCAACCCTGCACT AGAAGGAGGATCACAGGATCTGAATAGAAAGCACAAGGTATCGCCAACTGAAACTCCTGAAAATTCTGAGCCATACAATACTGATTCAAGTTTGCAGCCT GCAAAACGTCCAAGAACAGATGCCTAG
AA sequence Show only first row Show all	>Potri.002G257800.11 pacid=42779615 polypeptide=Potri.002G257800.11.p locus=Potri.002G257800 ID=Potri.002G257800.11.v4.1 annot-version=v4.1 MTFPVSHYCEPIRRVLSEAMEGRPAFSIQRAGAKQLGNLGVSGTLSSSLPVVPTPLEETYSKLPGCQQVSMERELMTRPLVHASHLPSNNGVVGHLFSSS ASFSTDLQYSSVTPREKHSRNTPFISQSSANAGALLMSQSSPSALLQSTTTSHYVNENSASWCPESPPGFLDFPTNTTVQNNQIESNSCAGVMASEEFGK RNDWQEWADQLITDDDALTTNWNELLADTSIVDMEPKMAYQVSKPSSNTPVQHSQGHLQLPSLSAEIRPVLTPTSSANSAPTKPRMRWTPELHEAFVEAV NNLGGATPKGVLKLMKVDSLTIYHVKSHLQKYRTARYRPESSEGSSEKRLTSIDEISSLDLKTGIEITEALRLQMEVQKRLHEQLEIQRNLQLRIEEQGR HLQMMFEKQCKSGIDVDKLKAASSALENPSTLSSDAIQDSPAKNDLETAQVDCGKTPTDTIYANPALEGGSQDLNRKHKVSPTETPENSEPYNTDSSLQP AKRPRTDA

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DESeq2's median of ratios [POPLAR]

Mapped by: StringTie Salmon Order by: Tissue Experiment Show only core collection Show again Show schematic diagram

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Coexpressed genes

Compare expression of checked genes Schematic diagram [FLAX] Schematic diagram [POPLAR]

*If you select 4 or less genes and then press "compare expression", expression will be shown as a graph. If you select more than 4 genes, expresion will be shown as a heat map.
*Color represents relative expression level among samples for each gene.

At best	At TF class	At alias	At description		Locus	MR	r	Symbol	NWA:WT	NWB:WT	NWA:OE-ARK2	NWB:OE-ARK2	NWA:miRNA-ARK2	NWB:miRNA-ARK2	NW 0hr	WT H20	WT-NW	TUA1dEY NW	TUA1dEY+TUB15 NW	TUA1dY+TUB9 NW	Pde NW	NWA:WT GA	NWBWT GA	TW:WT	TW:WT GA	NWA:OE-ARK2 GA	NWB:OE-ARK2 GA	TW:OE-ARK2	TW:OE-ARK2 GA	NWA:miRNA-ARK2 GA	NWB:miRNA-ARK2 GA	TW:miRNA-ARK2	TW:miRNA-ARK2 GA	TW 2hr	TW 8hr	TW 24hr	TW 48hr	TW 96hr	TW 336hr	WT ACC	35S::etr1-1 H20	35S::etr1-1 ACC	LMX5::etr1-1 H20	LMX5::etr1-1 ACC	WT-TW	TUA1dEY TW	TUA1dEY+TUB15 TW	TUA1dY+TUB9 TW	Pde TW	OW:WT	OW:WT GA	OW:OE-ARK2	OW:OE-ARK2 GA	OW:miRNA-ARK2	OW:miRNA-ARK2 GA	OW 2hr	OW 8hr	OW 24hr	OW 48hr	OW 96hr	OW 336hr	Root CTR	Root LongCold	Root LongDrougt	Root LongHeat	Root LongSalt	Root ShortCold	Root ShortDrougt	Root ShortHeat	Root ShortSalt	Ptr root	Leaf CTR	Leaf LongCold	Leaf LongDrougt	Leaf LongHeat	Leaf LongSalt	Leaf ShortCold	Leaf ShortDrougt	Leaf ShortHeat	Leaf ShortSalt	Ptr leaf	Stem CTR	Stem LongCold	Stem LongDrougt	Stem LongHeat	Stem LongSalt	Stem ShortCold	Stem ShortDrougt	Stem ShortHeat	Stem ShortSalt	Ptr shoot	Ptr xylem	Ptr phloem	Ptr fiber	Ptr vessel	Ptr fiber vessel ray
AT4G28610	GARP	ATPHR1, PHR1	phosphate starvation response ...		Potri.002G257800 [exp]	0	1
AT4G35510			unknown protein		Potri.007G063000 [exp]	2.23	0.7572
AT3G29270			RING/U-box superfamily protein...		Potri.012G067200 [exp]	3.87	0.6838
AT5G10930		CIPK5, SnRK3.24	SNF1-RELATED PROTEIN KINASE 3....		Potri.018G019900 [exp]	5.91	0.6252
AT5G25220	HD	KNAT3	KNOTTED1-like homeobox gene 3 ...		Potri.018G022700 [exp]	7.21	0.6966	Pt-KNAT3.3
AT2G22640		ATBRK1, BRK1, H...	BRICK1, putative (.1)		Potri.014G010000 [exp]	7.41	0.6391
AT5G23450		ATLCBK1	long-chain base (LCB) kinase 1...		Potri.010G255600 [exp]	10.00	0.6661
AT3G28920	ZF_HD	ATHB34, ZHD9	ZINC FINGER HOMEODOMAIN 9, hom...		Potri.017G082900 [exp]	12.40	0.6195
AT1G17720		ATBBETA, ATB BE...	Protein phosphatase 2A, regula...		Potri.001G197300 [exp]	16.12	0.6100	Pt-ATB.1
AT3G61610			Galactose mutarotase-like supe...		Potri.002G167200 [exp]	17.02	0.6223
AT4G01840		KCO5, ATTPK5, A...	Ca2+ activated outward rectify...		Potri.014G113700 [exp]	27.33	0.6226

Compare expression of checked genes

Potri.002G257800 coexpression network

*The number of genes in the network is adjusted within 50 genes.
*Gene name represents symbol(s) of closest Arabidopsis gene if symbol(s) for the gene itself doesn't exist.
*Circle diameter represents the number of connection with other genes within this network.
*Color for gene name represents subnetwork based on the result of network clustering.