Plant FIBer expression Database

External link	JGI Phytozome v13 [genome browser] Popgenie AspWood
Symbol
Arabidopsis homologues Show only best Show top 10	Locus ID BLAST score/e-value TF class Alias TAIR10 short description AT3G14470 403 / 7e-123 NB-ARC domain-containing disease resistance protein (.1) AT3G14460 349 / 4e-101 LRR and NB-ARC domains-containing disease resistance protein (.1) AT3G07040 221 / 1e-59 RPS3, RPM1 RESISTANCE TO PSEUDOMONAS SYRINGAE 3, RESISTANCE TO P. SYRINGAE PV MACULICOLA 1, NB-ARC domain-containing disease resistance protein (.1) AT1G53350 212 / 2e-56 Disease resistance protein (CC-NBS-LRR class) family (.1) AT3G50950 208 / 2e-55 ZAR1 HOPZ-ACTIVATED RESISTANCE 1 (.1.2) AT5G35450 208 / 3e-55 Disease resistance protein (CC-NBS-LRR class) family (.1) AT1G50180 202 / 2e-53 NB-ARC domain-containing disease resistance protein (.1) AT3G46730 201 / 3e-53 NB-ARC domain-containing disease resistance protein (.1) AT3G46710 198 / 2e-52 NB-ARC domain-containing disease resistance protein (.1) AT1G59218 200 / 3e-52 Disease resistance protein (CC-NBS-LRR class) family (.1), Disease resistance protein (CC-NBS-LRR class) family (.2)
Paralogs Show only best Show top 10	Gene ID BLAST score/e-value At best hit BLAST score/e-value TAIR10 short description Potri.014G012000 [exp] 1811 / 0 AT3G14470 367 / 7e-109 NB-ARC domain-containing disease resistance protein (.1) Potri.014G005600 [exp] 1802 / 0 AT3G14470 362 / 3e-107 NB-ARC domain-containing disease resistance protein (.1) Potri.014G007600 [exp] 1798 / 0 AT3G14470 381 / 3e-114 NB-ARC domain-containing disease resistance protein (.1) Potri.004G170400 [exp] 1714 / 0 AT3G14470 401 / 3e-121 NB-ARC domain-containing disease resistance protein (.1) Potri.004G170700 [exp] 1676 / 0 AT3G14470 409 / 3e-124 NB-ARC domain-containing disease resistance protein (.1) Potri.004G169800 [exp] 1628 / 0 AT3G14470 393 / 1e-118 NB-ARC domain-containing disease resistance protein (.1) Potri.004G170232 [exp] 1619 / 0 AT3G14470 367 / 1e-108 NB-ARC domain-containing disease resistance protein (.1) Potri.014G003832 [exp] 1578 / 0 AT3G14470 370 / 1e-109 NB-ARC domain-containing disease resistance protein (.1) Potri.014G003200 [exp] 1571 / 0 AT3G14470 352 / 4e-103 NB-ARC domain-containing disease resistance protein (.1)
Flax homologues Show only best Show top 10	Locus ID BLAST score/e-value At best hit BLAST score/e-value TAIR10 short description Lus10039540 [exp] 478 / 3e-150 AT3G14470 727 / 0.0 NB-ARC domain-containing disease resistance protein (.1) Lus10005218 [exp] 460 / 4e-143 AT3G14470 379 / 2e-113 NB-ARC domain-containing disease resistance protein (.1) Lus10039509 [exp] 453 / 4e-139 AT3G14460 613 / 0.0 LRR and NB-ARC domains-containing disease resistance protein (.1) Lus10026109 [exp] 444 / 2e-135 AT3G14470 598 / 0.0 NB-ARC domain-containing disease resistance protein (.1) Lus10005321 [exp] 434 / 1e-131 AT3G14460 607 / 0.0 LRR and NB-ARC domains-containing disease resistance protein (.1) Lus10007261 [exp] 416 / 1e-125 AT3G14460 654 / 0.0 LRR and NB-ARC domains-containing disease resistance protein (.1) Lus10026132 [exp] 418 / 5e-125 AT3G14460 594 / 0.0 LRR and NB-ARC domains-containing disease resistance protein (.1) Lus10024173 [exp] 396 / 1e-118 AT3G14460 681 / 0.0 LRR and NB-ARC domains-containing disease resistance protein (.1) Lus10022351 [exp] 381 / 9e-113 AT3G14470 369 / 1e-108 NB-ARC domain-containing disease resistance protein (.1) Lus10016316 [exp] 372 / 3e-110 AT3G14470 494 / 6e-156 NB-ARC domain-containing disease resistance protein (.1)
PFAM info	Clan ID Clan name Pfam ID Pfam name Pfam description CL0023 [poplar] [flax] P-loop_NTPase PF00931 [poplar] [flax] NB-ARC NB-ARC domain
Representative CDS sequence Show only first row Show all	>Potri.003G015500.2 pacid=42786708 polypeptide=Potri.003G015500.2.p locus=Potri.003G015500 ID=Potri.003G015500.2.v4.1 annot-version=v4.1 ATGGCAGCAGAGCTTTTTCTTACGTTTGCCATGGAGGAGACTTTGACAAGGGTCAGTTCCATAGCTGCTGAAGGGATCAGACTTGCCTGGGGATTGGAGG GACAGCTGCAAAAGCTCAACCAGTCCTTGACCATGATCCAAGCTGTGCTCCAAGATGCAGCCAGAAGGCCAGTAACAGACAAGTCTGCGAAGCTTTGGCT GGAGAAGCTACAAGATGTAGCTTACGATGCTGAAGATGTTCTAGACGAGTTTGCTTATGAGATTCTCCGAAAAGACCAAAAGAAGGGAAAGGTACGTGAC TGCTTTTCACTGCACAACCCTGTTGCATTCCGTCTGAATATGGGTCAAAAAGTTAAGGAGATCAATGGATCAATGGATGAGATTCAGAAACTTGCAATTG GCTTTGGGCTGGGAATCGCATCTCAACATGTAGAGAGTGCTCCTGAAGTTATCCGGGATATAGAGCGAGAGACAGATTCCTTGCTTGAAAGCTCAGAAGT TGTAGTAGGAAGGGAGGATGATGTCTCTAAAGTTGTGAAATTGCTGATTGGCTCGACTGATCAACAAGTTCTATCTGTTGTCCCTATAGTGGGGATGGGT GGCCTCGGAAAGACTACTATAGCAAAAAAAATTTGTGAAGTAGTGAGGGAGAAAAAGCTTTTTGATGTAACAATATGGGTTTGCGTTTCTAATGATTTTA GTAAAGGGAGGATTTTAGGAGAGATGTTGCAAGATGTTGATGGAACTATGTTGAACAATCTAAATGCAGTTATGAAAAAACTTAAGGAAAAGCTGGAAAA GAAGACATTTTTTCTTGTACTTGATGATGTGTGGGAAGGCCATGATAAGTGGAATGATTTGAAGGAGCAACTGTTAAAAATCAACAATAAGAATGGGAAT GCTGTTGTTGTAACAACGCGCATTAAGGAAGTAGCGGACACGATGAAGACTTCTCCAGGGAGTCAGCACGAGCCAGGGCAACTTTCAGATGATCAATCTT GGTCCATTATCAAGCAAAAGGTGAGCAGGGGTGGACGAGAAACAATAGCTTCGGACTTGGAGTCTATTGGAAAAGATATTGCAAAGAAATGTGGAGGGAT TCCATTACTTGCTAAAGTTTTGGGAGGAACTCTTCACGGAAAGCAGGCACAGGAGTGGAAGTCAATTCTAAACAGTAGAATTTGGGATTATCAGGATGGA AATAAAGTTTTGCGCATATTGAGACTCAGTTTTGATTACTTGTCATTGCCATCACTGAAAAAATGTTTTTCATACTGTTCCATTTTTCCTAAAGATTTTA AAATCGGAAGGGAAGAGCTAATTCAACTTTGGATGGCTGAAGGTTTTCTCAGGCCATCAAATGGGAGGATGGAAGATGAAGGCAACAAGTATTTCAATGA CTTGCATGCAAATTCCTTTTTCCAAGATGTTGAAAGGAATGCGTATGAGATCGTAACAAGTTGCAAGATGCATGATTTTGTGCATGATCTTGCATTACAG GTCTCAAAATCAGAAACGTTAAATCTGGAGGCGGGTTCGGCTGTAGATGGTGCATCTCATATTCGTCATCTCAATCTCATTTCTTGTGGGGATGTCGAGT CAATATTTCCAGCGGATGATGCTAGAAAATTGCATACTGTTTTCTCAATGGTTGATGTATTCAATGGGTCTTGGAAATTCAAAAGTTTGAGAACTATCAA ATTGCGAGGGCCTAATATCACAGAGTTACCCGATTCAATTTGGAAGCTGAGGCATTTGAGATATCTTGATGTCTCGCGTACCAGTATCAGAGCATTGCCG GAATCCATCACCAAGCTCTACCATTTGGAAACATTAAGATTCACTGATTGCAAGTCACTAGAAAAGCTTCCCAAGAAAATGAGAAATTTAGTCAGCTTGA GACATCTTCATTTTGATGATCCAAAGCTAGTGCCAGCTGAGGTGAGACTCTTAACACGCCTTCAAACTCTGCCTTTTTTTGTTGTGGGTCAAAATCATAT GGTTGAAGAGCTGGGATGTTTGAATGAACTAAGAGGAGAATTGCAGATATGCAAGCTTGAGCAAGTGAGAGACAGAGAAGAAGCTGAGAAGGCAAAACTG CGTGGAAAAAGAATGAACAAATTGGTGCTTAAATGGAGCCTTGAAGGTAACCGCAATGTTAACAACGAGTATGTGCTAGAAGGCCTGCAGCCTCACGTAG ACATAAGAAGCTTGACAATTGAGGGTTATGGAGGTGAATATTTCCCATCATGGATGTCTACATTGCCACTCAATAATCTGACGGTGCTGAGAATGAAAGA CTGCAGCAAGTGCAGACAACTCCCAGCACTTGGATGTCTTCCTCGCCTTAAGATTCTAGAGATGAGTGGAATGCGTAATGTGAAATGTATAGGCAATGAG TTCTATAGTAGCAGTGGCGGTGCAGCAGTACTGTTTCCAGCACTAAAAGAACTCACTTTGGAGGATATGGATGGTCTTGAAGAATGGATAGTACCAGGTA GAGAAGGTGATCAAGTATTTCCTTGTCTTGAAAAGTTGAGTATTTGGAGTTGTGGCAAGTTGAAAAGCATTCCGATATGTCGTCTTTCATCTCTTGTACA ATTTAGAATTGAAAGATGTGAGGAACTGGGATATTTATGTGGTGAGTTTCATGGCTTCGCGTCTCTTCAGATTTTAAGGATAGTGAATTGTTCAAAGCTG GCATCCATTCCAAGCGTACAACACTGCACAGCTCTGGTGGAATTGAGTATACAACAGTGCAGTGAGTTGATCTCAATTCCTGGTGATTTTCGAGAATTGA AATATTCTTTGAAGAGATTGATTGTTTATGGGTGTAAATTGGGAGCTCTTCCAAGCGGACTACAATGTTGCGCATCTCTAAGGAAATTGCGGATAAGGAA TTGTAGAGAGCTTATCCATATCAGTGATTTACAAGAACTGTCTTCGCTTCAAGGATTAACCATTTCATCATGTGAGAAGCTCATCAATATTGATTGGCAT GGTTTACGACAATTACGTTCTCTTGTTGAATTAGAAATCAGTATGTGTCCCTGTTTGAGAGATATCCCAGAGGATGATTGGTTAGGCAGCCTCACCCAAC TGAAGGAATTGAGCATCGGTGGTTGTTTCTCAGAGGAGATGGAGGCTTTTCCTGCAGGATTTTTAAACTCAATCCAACACCTCAACTTGAGTGGGTCCCT TCAAAAACTACAGATATGGGGGTGGGATAAACTGAAGAGTGTACCCCCATCAACTTCAACACCTCACTGCCCTTGA
AA sequence Show only first row Show all	>Potri.003G015500.2 pacid=42786708 polypeptide=Potri.003G015500.2.p locus=Potri.003G015500 ID=Potri.003G015500.2.v4.1 annot-version=v4.1 MAAELFLTFAMEETLTRVSSIAAEGIRLAWGLEGQLQKLNQSLTMIQAVLQDAARRPVTDKSAKLWLEKLQDVAYDAEDVLDEFAYEILRKDQKKGKVRD CFSLHNPVAFRLNMGQKVKEINGSMDEIQKLAIGFGLGIASQHVESAPEVIRDIERETDSLLESSEVVVGREDDVSKVVKLLIGSTDQQVLSVVPIVGMG GLGKTTIAKKICEVVREKKLFDVTIWVCVSNDFSKGRILGEMLQDVDGTMLNNLNAVMKKLKEKLEKKTFFLVLDDVWEGHDKWNDLKEQLLKINNKNGN AVVVTTRIKEVADTMKTSPGSQHEPGQLSDDQSWSIIKQKVSRGGRETIASDLESIGKDIAKKCGGIPLLAKVLGGTLHGKQAQEWKSILNSRIWDYQDG NKVLRILRLSFDYLSLPSLKKCFSYCSIFPKDFKIGREELIQLWMAEGFLRPSNGRMEDEGNKYFNDLHANSFFQDVERNAYEIVTSCKMHDFVHDLALQ VSKSETLNLEAGSAVDGASHIRHLNLISCGDVESIFPADDARKLHTVFSMVDVFNGSWKFKSLRTIKLRGPNITELPDSIWKLRHLRYLDVSRTSIRALP ESITKLYHLETLRFTDCKSLEKLPKKMRNLVSLRHLHFDDPKLVPAEVRLLTRLQTLPFFVVGQNHMVEELGCLNELRGELQICKLEQVRDREEAEKAKL RGKRMNKLVLKWSLEGNRNVNNEYVLEGLQPHVDIRSLTIEGYGGEYFPSWMSTLPLNNLTVLRMKDCSKCRQLPALGCLPRLKILEMSGMRNVKCIGNE FYSSSGGAAVLFPALKELTLEDMDGLEEWIVPGREGDQVFPCLEKLSIWSCGKLKSIPICRLSSLVQFRIERCEELGYLCGEFHGFASLQILRIVNCSKL ASIPSVQHCTALVELSIQQCSELISIPGDFRELKYSLKRLIVYGCKLGALPSGLQCCASLRKLRIRNCRELIHISDLQELSSLQGLTISSCEKLINIDWH GLRQLRSLVELEISMCPCLRDIPEDDWLGSLTQLKELSIGGCFSEEMEAFPAGFLNSIQHLNLSGSLQKLQIWGWDKLKSVPPSTSTPHCP

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DESeq2's median of ratios [POPLAR]

Mapped by: StringTie Salmon Order by: Tissue Experiment Show only core collection Show again Show schematic diagram

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Coexpressed genes

Compare expression of checked genes Schematic diagram [FLAX] Schematic diagram [POPLAR]

*If you select 4 or less genes and then press "compare expression", expression will be shown as a graph. If you select more than 4 genes, expresion will be shown as a heat map.
*Color represents relative expression level among samples for each gene.

At best	At TF class	At alias	At description		Locus	MR	r	Symbol	NWA:WT	NWB:WT	NWA:OE-ARK2	NWB:OE-ARK2	NWA:miRNA-ARK2	NWB:miRNA-ARK2	NW 0hr	WT H20	WT-NW	TUA1dEY NW	TUA1dEY+TUB15 NW	TUA1dY+TUB9 NW	Pde NW	NWA:WT GA	NWBWT GA	TW:WT	TW:WT GA	NWA:OE-ARK2 GA	NWB:OE-ARK2 GA	TW:OE-ARK2	TW:OE-ARK2 GA	NWA:miRNA-ARK2 GA	NWB:miRNA-ARK2 GA	TW:miRNA-ARK2	TW:miRNA-ARK2 GA	TW 2hr	TW 8hr	TW 24hr	TW 48hr	TW 96hr	TW 336hr	WT ACC	35S::etr1-1 H20	35S::etr1-1 ACC	LMX5::etr1-1 H20	LMX5::etr1-1 ACC	WT-TW	TUA1dEY TW	TUA1dEY+TUB15 TW	TUA1dY+TUB9 TW	Pde TW	OW:WT	OW:WT GA	OW:OE-ARK2	OW:OE-ARK2 GA	OW:miRNA-ARK2	OW:miRNA-ARK2 GA	OW 2hr	OW 8hr	OW 24hr	OW 48hr	OW 96hr	OW 336hr	Root CTR	Root LongCold	Root LongDrougt	Root LongHeat	Root LongSalt	Root ShortCold	Root ShortDrougt	Root ShortHeat	Root ShortSalt	Ptr root	Leaf CTR	Leaf LongCold	Leaf LongDrougt	Leaf LongHeat	Leaf LongSalt	Leaf ShortCold	Leaf ShortDrougt	Leaf ShortHeat	Leaf ShortSalt	Ptr leaf	Stem CTR	Stem LongCold	Stem LongDrougt	Stem LongHeat	Stem LongSalt	Stem ShortCold	Stem ShortDrougt	Stem ShortHeat	Stem ShortSalt	Ptr shoot	Ptr xylem	Ptr phloem	Ptr fiber	Ptr vessel	Ptr fiber vessel ray
AT3G14470			NB-ARC domain-containing disea...		Potri.003G015500 [exp]	0	1
AT3G10300			Calcium-binding EF-hand family...		Potri.016G043600 [exp]	6.32	0.8460
AT4G17350			Plant protein of unknown funct...		Potri.003G077900 [exp]	6.70	0.8263
AT1G21270		WAK2	wall-associated kinase 2 (.1)		Potri.009G154600 [exp]	9.16	0.8233
AT1G07650			Leucine-rich repeat transmembr...		Potri.001G308600 [exp]	9.48	0.8203
AT5G66850		MAPKKK5	mitogen-activated protein kina...		Potri.005G135100 [exp]	9.79	0.8138
AT3G48080			alpha/beta-Hydrolases superfam...		Potri.012G074700 [exp]	12.60	0.8397	Pt-EDS1.3
AT2G24300			Calmodulin-binding protein (.1...		Potri.018G111200 [exp]	17.97	0.8039	Pt-CBP60.8
AT1G70740			Protein kinase superfamily pro...		Potri.008G132300 [exp]	22.58	0.8256
AT3G14470			NB-ARC domain-containing disea...		Potri.014G012000 [exp]	22.64	0.7908
AT1G69550			disease resistance protein (TI...		Potri.005G030700 [exp]	27.54	0.8144

Compare expression of checked genes

Potri.003G015500 coexpression network

*The number of genes in the network is adjusted within 50 genes.
*Gene name represents symbol(s) of closest Arabidopsis gene if symbol(s) for the gene itself doesn't exist.
*Circle diameter represents the number of connection with other genes within this network.
*Color for gene name represents subnetwork based on the result of network clustering.