Plant FIBer expression Database

External link	JGI Phytozome v13 [genome browser] Popgenie AspWood
Symbol	Pt-KUP7.2
Arabidopsis homologues Show only best Show top 10	Locus ID BLAST score/e-value TF class Alias TAIR10 short description AT5G09400 1121 / 0 KUP7 K+ uptake permease 7, K+ uptake permease 7 (.1) AT4G33530 1079 / 0 KUP5 K+ uptake permease 5, K+ uptake permease 5 (.1) AT1G60160 832 / 0 Potassium transporter family protein (.1) AT4G13420 567 / 0 HAK5, ATHAK5 high affinity K+ transporter 5, ARABIDOPSIS THALIANA HIGH AFFINITY K+ TRANSPORTER 5, high affinity K+ transporter 5 (.1) AT4G19960 558 / 0 KT9, HAK9, ATKUP9 K+ uptake permease 9, K+ uptake permease 9 (.1), K+ uptake permease 9 (.2) AT1G31120 553 / 0 KUP10 K+ uptake permease 10, K+ uptake permease 10 (.1) AT2G35060 549 / 0 KUP11 K+ uptake permease 11, K+ uptake permease 11 (.1), K+ uptake permease 11 (.2) AT5G14880 517 / 6e-172 Potassium transporter family protein (.1) AT2G40540 517 / 1e-171 ATKUP2, ATKT2, TRK2, SHY3, KT2 potassium transporter 2 (.1.2) AT3G02050 509 / 9e-169 ATKT4, ATKUP3, KUP3 K+ uptake transporter 3, ARABIDOPSIS THALIANA POTASSIUM TRANSPORTER 4, K+ uptake transporter 3 (.1)
Paralogs Show only best Show top 10	Gene ID BLAST score/e-value At best hit BLAST score/e-value TAIR10 short description Potri.001G205500 [exp] 1262 / 0 AT5G09400 1081 / 0.0 K+ uptake permease 7, K+ uptake permease 7 (.1) Potri.010G094400 [exp] 852 / 0 AT1G60160 1209 / 0.0 Potassium transporter family protein (.1) Potri.001G045200 [exp] 598 / 0 AT4G13420 978 / 0.0 high affinity K+ transporter 5, ARABIDOPSIS THALIANA HIGH AFFINITY K+ TRANSPORTER 5, high affinity K+ transporter 5 (.1) Potri.001G069650 [exp] 598 / 0 AT4G13420 951 / 0.0 high affinity K+ transporter 5, ARABIDOPSIS THALIANA HIGH AFFINITY K+ TRANSPORTER 5, high affinity K+ transporter 5 (.1) Potri.001G123800 [exp] 579 / 0 AT2G35060 1149 / 0.0 K+ uptake permease 11, K+ uptake permease 11 (.1), K+ uptake permease 11 (.2) Potri.003G109700 [exp] 578 / 0 AT2G35060 1155 / 0.0 K+ uptake permease 11, K+ uptake permease 11 (.1), K+ uptake permease 11 (.2) Potri.014G132500 [exp] 570 / 0 AT4G13420 852 / 0.0 high affinity K+ transporter 5, ARABIDOPSIS THALIANA HIGH AFFINITY K+ TRANSPORTER 5, high affinity K+ transporter 5 (.1) Potri.014G144900 [exp] 561 / 0 AT3G02050 1175 / 0.0 K+ uptake transporter 3, ARABIDOPSIS THALIANA POTASSIUM TRANSPORTER 4, K+ uptake transporter 3 (.1) Potri.002G237500 [exp] 555 / 0 AT3G02050 1179 / 0.0 K+ uptake transporter 3, ARABIDOPSIS THALIANA POTASSIUM TRANSPORTER 4, K+ uptake transporter 3 (.1)
Flax homologues Show only best Show top 10	Locus ID BLAST score/e-value At best hit BLAST score/e-value TAIR10 short description Lus10003402 [exp] 1199 / 0 AT5G09400 1296 / 0.0 K+ uptake permease 7, K+ uptake permease 7 (.1) Lus10036160 [exp] 1140 / 0 AT5G09400 1204 / 0.0 K+ uptake permease 7, K+ uptake permease 7 (.1) Lus10012993 [exp] 823 / 0 AT1G60160 1237 / 0.0 Potassium transporter family protein (.1) Lus10027004 [exp] 586 / 0 AT4G13420 828 / 0.0 high affinity K+ transporter 5, ARABIDOPSIS THALIANA HIGH AFFINITY K+ TRANSPORTER 5, high affinity K+ transporter 5 (.1) Lus10025493 [exp] 570 / 0 AT4G13420 826 / 0.0 high affinity K+ transporter 5, ARABIDOPSIS THALIANA HIGH AFFINITY K+ TRANSPORTER 5, high affinity K+ transporter 5 (.1) Lus10018324 [exp] 560 / 0 AT2G35060 1212 / 0.0 K+ uptake permease 11, K+ uptake permease 11 (.1), K+ uptake permease 11 (.2) Lus10013304 [exp] 557 / 0 AT4G13420 950 / 0.0 high affinity K+ transporter 5, ARABIDOPSIS THALIANA HIGH AFFINITY K+ TRANSPORTER 5, high affinity K+ transporter 5 (.1) Lus10030857 [exp] 543 / 0 AT1G70300 1249 / 0.0 K+ uptake permease 6, K+ uptake permease 6 (.1) Lus10012992 [exp] 534 / 6e-179 AT1G70300 1188 / 0.0 K+ uptake permease 6, K+ uptake permease 6 (.1) Lus10030632 [exp] 534 / 1e-178 AT1G70300 1238 / 0.0 K+ uptake permease 6, K+ uptake permease 6 (.1)
PFAM info	Clan ID Clan name Pfam ID Pfam name Pfam description CL0062 [poplar] [flax] APC PF02705 [poplar] [flax] K_trans K+ potassium transporter
Representative CDS sequence Show only first row Show all	>Potri.003G023900.1 pacid=42786087 polypeptide=Potri.003G023900.1.p locus=Potri.003G023900 ID=Potri.003G023900.1.v4.1 annot-version=v4.1 ATGGCAGACGAGAACGGCATTGGCAGATCCGAGAGTCGACTAGCGTCGATGGACTCGGTGGAGTCACGGTGGGTGTTTCAAGACGACGACGACGACGAGG ATGATTCACTGATGGACGACGACGACGACGAACATAGTCGACTGCGGCGCGGTGGTGGATTAGACTCCGAGGAGGAAGACGAGGAGGACACGGCCGAGCA GCGGCTGATCCGAACTGGTCCCCGCATCGACTCCTTCGATGTCGAAGCCCTAGAGATCCCCAGCGCCCACCGCAACGACTACTTCTACGAGGAATTGGGC GTGGGAAGGAGAATAATACTTGCATTTCAAACGCTGGGAGTTGTATTTGGTGATGTTGGGACAAGTCCTTTGTATACCTTCCATGTTATGTTTAACAAAG CACCTGTTAATGGGGAAGAAGATGTCATCGGTGCATTGTCTTTGGTTTTGTATACTTTGATATTGATTCCCCTTGTTAAGTATGTACTTGTTGTTCTTTG GGCCAATGATGACGGCGAAGGTGGCACTTTTGCGCTGTACTCTTTGATTTGTCGCCATGCTAAGGTCAATCTTCTCCCTAATCAGCTTCCTTCCGATGCT CGTATATCTAGCTTCAGGCTCAAGGTGCCCTCAGCAGAACTTGAGAGATCCTTGAAAATAAAGGAGAGACTTGAGACATCACCCCATCTCAAAAGAATGC TTCTCATGCTAGTGCTTGCTGGTACTTCTATGTTGATTGCTGATGGGGTTGTTACCCCTGCTATGTCAGTAATGTCTGCTGTTGGTGGCCTAAAGGTTGG AGTGGCTTCAATTAAGCAAGAGCAAGTGGTGATGATTTCGGTTGCTTTTCTTGTAATTTTATTCAGTGTACAGAAGTTTGGGACCAGTAAAGTCGGACTT GCTGTAGGCCCTGCTTTATTCATATGGTTTTGTTCTCTTGCAGCCATTGGGATTTATAACCTTGTTAAATATGATAGCAGTGTCTTGAGGGCATTTAATC CTGTTCACATTTATTACTTCTTCAAGAGGAACTCAACTAAGGGCTGGCGTGCACTTGGAGGTTGCTTGCTATGTGCAACAGGATCTGAGGCAATGTTTGC GGATCTTTGCTACTTTTCTGTGAGATCAGTGCAGCTTACCTTTGTATTTCTCGTTTTACCTTGCCTTTTATTGGGTTATTTGGGTCAAGCTGCATACCTA ATGGAACATTACTCTGATGATCTGGCTGAGCATGCTTTCTATTCTTCAGTACCAAGTGGTTTTTTCTGGCCTGTCTTCCTCGTTGCTAATTTAGCGGCAT TAATTGCTAGCCGGGCTATGACTACTGCTACATTTTCGTGTATAAAACAATCAACAGCGCTTGGTTGTTTCCCCCGTCTTAAAATCATTCATACCTCGCG GAAATTCATGGGTCAAATTTATATTCCTGTCATAAACTGGTTTTTGCTGGTAGTTTGCCTGGTGCTCGTCTGCTCTATCTCAAGCATTACTGAGATAGGA AATGCATATGGAATTGCTGAGCTGGGGGTGATGATGACAACAACAATTTTAGTAACGATTGTTATGCTTCTCATATGGCAGATAAACATAATTATTGTCC TGAGTTTTTTGGTTATTTTCCTAGGAATAGAATTGGTCTTCTTCTCATCAGTTCTAGGAGGTGTGGGAGATGGAAGTTGGATCATACTGGTCTTTGCTGT AGTTATGTTTTTTGTAATGTTAGTCTGGAACTACGGGAGCAAGCTCAAGTATGAAACTGAAGTTAAGAAAAAACTGTCAATGGATTTGGTGCGTGAATTG GGACCCAATCTTGGAACAATTAGAGCCCCAGGCATTGGTTTGATATACAATGAACTGGTCAAAGGAATACCAGCTATTTTTGGCCATTTTCTTACCACTC TTCCGGCTATCCATTCAATGATTATATTTGTGTGTATAAAGTATGTTCCAGTTCCAGTAGTGCCTCAGGGCGAAAGGTTCCTTTTCCGACGAGTCTGCCC AAAAAGCTACCACATATTTCGTTGTATTGCGAGGTATGGCTACAAGGATGTTCGTAAAGAGAATCACCAGGCATTTGAACAGCTGTTAATTGAGAGCCTT GAGAAGTTCATTCGTCGGGAAGCCCAGGAACGTTCGTTAGAGAGTGATGGGGATGATGATACAGACTATGATGACGATTACTCTAGTACAAGAGTTTTAA TAGCTCCGAATGGAAGTGTCTACTCGCTTGGCGTGCCTCTACTAGGTGAGTACAAGGACACAAGCAAGTCCATTTCTGAAGCAAGCACATCTGAGGAGGC AAAGATAGGGTATCCCTCAGATTCTGCTTCTGATGCAGAACAGAGTCTTGAAAGGGAACTGTCTTTTATTCACAAGGCTAAAGAATCTGGGGTTGTATAT CTTCTTGGCCATGGAGACATTAGGGCAAGGAAAGACTCCTGGTTTATCAAGAAGTTGGTCATAAACTACTTCTATGCTTTTCTGAGAAAAAACTGTAGAA GAGGAACCGCAAATTTGAGCGTGCCCCACTCGCACCTCATGCAGGTTGGCATGACTTACATGGTTTGA
AA sequence Show only first row Show all	>Potri.003G023900.1 pacid=42786087 polypeptide=Potri.003G023900.1.p locus=Potri.003G023900 ID=Potri.003G023900.1.v4.1 annot-version=v4.1 MADENGIGRSESRLASMDSVESRWVFQDDDDDEDDSLMDDDDDEHSRLRRGGGLDSEEEDEEDTAEQRLIRTGPRIDSFDVEALEIPSAHRNDYFYEELG VGRRIILAFQTLGVVFGDVGTSPLYTFHVMFNKAPVNGEEDVIGALSLVLYTLILIPLVKYVLVVLWANDDGEGGTFALYSLICRHAKVNLLPNQLPSDA RISSFRLKVPSAELERSLKIKERLETSPHLKRMLLMLVLAGTSMLIADGVVTPAMSVMSAVGGLKVGVASIKQEQVVMISVAFLVILFSVQKFGTSKVGL AVGPALFIWFCSLAAIGIYNLVKYDSSVLRAFNPVHIYYFFKRNSTKGWRALGGCLLCATGSEAMFADLCYFSVRSVQLTFVFLVLPCLLLGYLGQAAYL MEHYSDDLAEHAFYSSVPSGFFWPVFLVANLAALIASRAMTTATFSCIKQSTALGCFPRLKIIHTSRKFMGQIYIPVINWFLLVVCLVLVCSISSITEIG NAYGIAELGVMMTTTILVTIVMLLIWQINIIIVLSFLVIFLGIELVFFSSVLGGVGDGSWIILVFAVVMFFVMLVWNYGSKLKYETEVKKKLSMDLVREL GPNLGTIRAPGIGLIYNELVKGIPAIFGHFLTTLPAIHSMIIFVCIKYVPVPVVPQGERFLFRRVCPKSYHIFRCIARYGYKDVRKENHQAFEQLLIESL EKFIRREAQERSLESDGDDDTDYDDDYSSTRVLIAPNGSVYSLGVPLLGEYKDTSKSISEASTSEEAKIGYPSDSASDAEQSLERELSFIHKAKESGVVY LLGHGDIRARKDSWFIKKLVINYFYAFLRKNCRRGTANLSVPHSHLMQVGMTYMV

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DESeq2's median of ratios [POPLAR]

Mapped by: StringTie Salmon Order by: Tissue Experiment Show only core collection Show again Show schematic diagram

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Coexpressed genes

Compare expression of checked genes Schematic diagram [FLAX] Schematic diagram [POPLAR]

*If you select 4 or less genes and then press "compare expression", expression will be shown as a graph. If you select more than 4 genes, expresion will be shown as a heat map.
*Color represents relative expression level among samples for each gene.

At best	At TF class	At alias	At description		Locus	MR	r	Symbol	NWA:WT	NWB:WT	NWA:OE-ARK2	NWB:OE-ARK2	NWA:miRNA-ARK2	NWB:miRNA-ARK2	NW 0hr	WT H20	WT-NW	TUA1dEY NW	TUA1dEY+TUB15 NW	TUA1dY+TUB9 NW	Pde NW	NWA:WT GA	NWBWT GA	TW:WT	TW:WT GA	NWA:OE-ARK2 GA	NWB:OE-ARK2 GA	TW:OE-ARK2	TW:OE-ARK2 GA	NWA:miRNA-ARK2 GA	NWB:miRNA-ARK2 GA	TW:miRNA-ARK2	TW:miRNA-ARK2 GA	TW 2hr	TW 8hr	TW 24hr	TW 48hr	TW 96hr	TW 336hr	WT ACC	35S::etr1-1 H20	35S::etr1-1 ACC	LMX5::etr1-1 H20	LMX5::etr1-1 ACC	WT-TW	TUA1dEY TW	TUA1dEY+TUB15 TW	TUA1dY+TUB9 TW	Pde TW	OW:WT	OW:WT GA	OW:OE-ARK2	OW:OE-ARK2 GA	OW:miRNA-ARK2	OW:miRNA-ARK2 GA	OW 2hr	OW 8hr	OW 24hr	OW 48hr	OW 96hr	OW 336hr	Root CTR	Root LongCold	Root LongDrougt	Root LongHeat	Root LongSalt	Root ShortCold	Root ShortDrougt	Root ShortHeat	Root ShortSalt	Ptr root	Leaf CTR	Leaf LongCold	Leaf LongDrougt	Leaf LongHeat	Leaf LongSalt	Leaf ShortCold	Leaf ShortDrougt	Leaf ShortHeat	Leaf ShortSalt	Ptr leaf	Stem CTR	Stem LongCold	Stem LongDrougt	Stem LongHeat	Stem LongSalt	Stem ShortCold	Stem ShortDrougt	Stem ShortHeat	Stem ShortSalt	Ptr shoot	Ptr xylem	Ptr phloem	Ptr fiber	Ptr vessel	Ptr fiber vessel ray
AT5G09400		KUP7	K+ uptake permease 7, K+ uptak...		Potri.003G023900 [exp]	0	1	Pt-KUP7.2
AT2G47500			P-loop nucleoside triphosphate...		Potri.014G125700 [exp]	6.00	0.8879
AT3G14172			unknown protein		Potri.001G164900 [exp]	9.48	0.8612
AT5G38880			unknown protein		Potri.017G100300 [exp]	10.09	0.8539
AT5G58000			Reticulon family protein (.1)		Potri.018G108200 [exp]	10.67	0.8884
AT3G27470			Protein of unknown function (D...		Potri.017G065200 [exp]	11.31	0.9019
AT2G37195			unknown protein		Potri.016G090000 [exp]	12.24	0.8745
AT1G10650			SBP (S-ribonuclease binding pr...		Potri.010G042200 [exp]	15.00	0.8855
AT1G33470			RNA-binding (RRM/RBD/RNP motif...		Potri.019G068400 [exp]	15.87	0.8746
AT1G53750		RPT1A	regulatory particle triple-A 1...		Potri.018G056600 [exp]	16.15	0.8797
AT3G54290			unknown protein		Potri.008G019700 [exp]	19.74	0.8762

Compare expression of checked genes

Potri.003G023900 coexpression network

*The number of genes in the network is adjusted within 50 genes.
*Gene name represents symbol(s) of closest Arabidopsis gene if symbol(s) for the gene itself doesn't exist.
*Circle diameter represents the number of connection with other genes within this network.
*Color for gene name represents subnetwork based on the result of network clustering.