Plant FIBer expression Database

External link	JGI Phytozome v13 [genome browser] Popgenie AspWood
Symbol
Arabidopsis homologues Show only best Show top 10	Locus ID BLAST score/e-value TF class Alias TAIR10 short description AT3G14470 265 / 7e-74 NB-ARC domain-containing disease resistance protein (.1) AT3G14460 257 / 2e-70 LRR and NB-ARC domains-containing disease resistance protein (.1) AT3G50950 159 / 9e-40 ZAR1 HOPZ-ACTIVATED RESISTANCE 1 (.1.2) AT3G07040 149 / 2e-36 RPS3, RPM1 RESISTANCE TO PSEUDOMONAS SYRINGAE 3, RESISTANCE TO P. SYRINGAE PV MACULICOLA 1, NB-ARC domain-containing disease resistance protein (.1) AT1G50180 137 / 6e-33 NB-ARC domain-containing disease resistance protein (.1) AT1G53350 134 / 6e-32 Disease resistance protein (CC-NBS-LRR class) family (.1) AT3G46530 132 / 2e-31 RPP13 RECOGNITION OF PERONOSPORA PARASITICA 13, NB-ARC domain-containing disease resistance protein (.1) AT1G12210 127 / 1e-29 RFL1 RPS5-like 1 (.1) AT3G46730 127 / 2e-29 NB-ARC domain-containing disease resistance protein (.1) AT1G58410 125 / 5e-29 Disease resistance protein (CC-NBS-LRR class) family (.1)
Paralogs Show only best Show top 10	Gene ID BLAST score/e-value At best hit BLAST score/e-value TAIR10 short description Potri.004G170400 [exp] 1559 / 0 AT3G14470 401 / 3e-121 NB-ARC domain-containing disease resistance protein (.1) Potri.004G169800 [exp] 1526 / 0 AT3G14470 393 / 1e-118 NB-ARC domain-containing disease resistance protein (.1) Potri.014G005600 [exp] 1474 / 0 AT3G14470 362 / 3e-107 NB-ARC domain-containing disease resistance protein (.1) Potri.014G012000 [exp] 1454 / 0 AT3G14470 367 / 7e-109 NB-ARC domain-containing disease resistance protein (.1) Potri.014G003832 [exp] 1450 / 0 AT3G14470 370 / 1e-109 NB-ARC domain-containing disease resistance protein (.1) Potri.014G007600 [exp] 1446 / 0 AT3G14470 381 / 3e-114 NB-ARC domain-containing disease resistance protein (.1) Potri.014G002900 [exp] 1405 / 0 AT3G14470 397 / 2e-119 NB-ARC domain-containing disease resistance protein (.1) Potri.013G041800 [exp] 1364 / 0 AT3G14470 325 / 2e-94 NB-ARC domain-containing disease resistance protein (.1) Potri.004G170700 [exp] 1361 / 0 AT3G14470 409 / 3e-124 NB-ARC domain-containing disease resistance protein (.1)
Flax homologues Show only best Show top 10	Locus ID BLAST score/e-value At best hit BLAST score/e-value TAIR10 short description Lus10039540 [exp] 356 / 3e-105 AT3G14470 727 / 0.0 NB-ARC domain-containing disease resistance protein (.1) Lus10039509 [exp] 329 / 6e-95 AT3G14460 613 / 0.0 LRR and NB-ARC domains-containing disease resistance protein (.1) Lus10005218 [exp] 308 / 3e-88 AT3G14470 379 / 2e-113 NB-ARC domain-containing disease resistance protein (.1) Lus10026109 [exp] 308 / 1e-87 AT3G14470 598 / 0.0 NB-ARC domain-containing disease resistance protein (.1) Lus10005321 [exp] 308 / 2e-87 AT3G14460 607 / 0.0 LRR and NB-ARC domains-containing disease resistance protein (.1) Lus10026132 [exp] 297 / 2e-83 AT3G14460 594 / 0.0 LRR and NB-ARC domains-containing disease resistance protein (.1) Lus10007261 [exp] 294 / 7e-83 AT3G14460 654 / 0.0 LRR and NB-ARC domains-containing disease resistance protein (.1) Lus10024173 [exp] 287 / 2e-80 AT3G14460 681 / 0.0 LRR and NB-ARC domains-containing disease resistance protein (.1) Lus10016316 [exp] 264 / 6e-73 AT3G14470 494 / 6e-156 NB-ARC domain-containing disease resistance protein (.1) Lus10022351 [exp] 241 / 3e-65 AT3G14470 369 / 1e-108 NB-ARC domain-containing disease resistance protein (.1)
PFAM info	Clan ID Clan name Pfam ID Pfam name Pfam description CL0023 [poplar] [flax] P-loop_NTPase PF00931 [poplar] [flax] NB-ARC NB-ARC domain
Representative CDS sequence Show only first row Show all	>Potri.003G025904.1 pacid=42787496 polypeptide=Potri.003G025904.1.p locus=Potri.003G025904 ID=Potri.003G025904.1.v4.1 annot-version=v4.1 ATGGAGGAGACTTTGAAAAGGCTGAGTTCCATTGCTGCTGAAGGGATCAGACTTGCTTGGGGATTTGAGGGCCAGCTGCGAAAGCTCAACCAGTCCTTGA CCACGATCAAAGATGTGCTCCAAGACGCAGCCAGAAGGGCAGTAACAGACGAGTCTGTGAAGCGTTGGCTGCAGAACCTACAGGTTGTAGCTTATGATGC TGAAGATGTTCTAGACGAGTTTGCGTATGAGATTCTCCGCAAAGAACAAAAGAAGGGAAAGGTATGTGACTGCTTTTCACTCCACAACCCCGTTGCATTC CGTTTGATTATGGGTCAAAAAGTTAAGAAGATCAATGAAGCCCTGGATGAAATCCGGAAAGATGCATCCGGATTTGGGCTTGGATTGACATCTCTACCAG TAGATAGTGCTCAAGAAGTTAGTTGGGGTCCAGATCGAGAGACAGATTCCTTCCTTGACCGCTCAGAAATTGTAGGAAGGAAGGATGATGTCTCTATAGT TATGGATATGCTGACTAGCTTGACCAAACACCGTGTCCTTTCGGTTGTCCCTATAGTGGGGATGGTTGGCCTTGGAAAGACTACTGTAGCAAAAAACATT TTAGGAGCATTGTTGCAAATGATTGACAAAACTACGGGTGGGTTGAGCAACCTAAATGCAATTATGGAAAACCTTAAGAAAAAGCTGGAAAAGAAGACAT TTTTTCTTATTCTTGATGATGTGTGGAATGAAGACCATGATAAGTGGGATGATTTGAAGGAGCAACTGTTAAAAATTAACCGCAAGAACGGGAATGCTGT TGTTGTTATAACCCACAGTAAGAAAGTAGCAGACATGATGGAGACTTCTCCTGGGATTCAGCACGAGCCAGGGAGACTATCAGCTGATCAATGTTGGTCC ATTATCAAGCAAAAGAAATGTGGAGGGCTTTCGTTGCTTGCCAATGTTTTGGGAGGAACGCTGCGGCAAAAGGAGACGCAGGAGTGGCAGTCAATTCTAA ACAGTAGAATTTGGGATTCTCATGATGGAAATAAAGCTTTCCGCGTATTGAGATTAAGTTTCGATTACTTGTCATCGCCAACATTGAAAAAATGTTTTGC ATACTGTTCCATTTTTCCTAAAGATTTTGAAATTGAAAGGGAAGAGCTAATTCAACTTTGGATGGCTGAAGGTTTTCTAAGGCCATCAAATGGGAGGATG GAAGACGAAGGCAACAAGTGTTTCAATGACTTGCTTGCAAATTCCTTTTTCCAAGATGTTGAAAGGAATGCGTATGAGATCGTAACAAGTTGCAAGATGC ATGATCTTGTGCATGACCTTGCATTGGAGGTCTCAAAATCAGAAACGTTAAATCTGGAGGTGGATTCGGCTGTAGATGGCGCATCTCATATTCGTCATCT CAATCTAATTTCTTGTGGGGATGTTGAGTCAGCATTAAAAGCGGGTTATGCTAGAAAATTGCTTACTGTTTTTCCAGTGGGTGATGCTAAAAAATTGCGT ACTGTTTTCTCAATGGTTGATGTATTAAATGGATCTTGGAAATTCAACAGGTTGAGAACTCTCAAATTGCGACGGTCTGATATCACAGAGTTACCAGATT CAATTTGCAAGCCGAGACATTTGAGATATCTTGATGTCTCCGACACTGCTATTAGGATATTGCCAGAATCCATCACCAAGCTCTACCTTTTGGAAACATT AAGATTCACTGATTGCAAGTCACTAGAAAAGTTTCCCAAGAAAATGAGAAAAGTCAGCTTGAGACATCTTCATTTTGATGATCCAAAGCTAGTGCCAGCT GAGGTGAGACTCTTAACACGCCTTCAAACTCTGCCTTTTTTTTGTTGTGGGTCCAAATCATATGGTAACAATAGTGTTAACAGCGAGGATGCGCTGGAAG GCCTGCAACCTCACCCAGACATAAGAAGCTTCACAATCAAGGGTTACTGTGGTGAATATTTCCCATCATGGATGTCTACATTGCAACTCAATAATCTGAC GGTCCTAACGTTGAACGGTTGCAGCAAGAGCAGACAACTCCCAACACTTGGATGTCTTCCTCGCCTTAAGATTCTTCACATAACTGGAATGCCTAGTGTG AAATGTATAGGCAATGAGTTCTATAGTAGTAGTGGCAGTGCAGCAGTGCTGTTTCTAGCACTGAAAGAACTCACTCTATCCAGTATGGATGGTCTTGAAG AATGGATGGTACCAGGTGGAGAAGGTGATCAAGTATTTCCTTGTCTTGAAAAGTTGTGCATTGAGGGGTGTGGCAAGTTGAAAAGCATTCCGATATGTCA CCCTTCATCTCTTGTACAATTTGTAATTCGAAAATGTGATGAACTGAGATATTTATGTGGTGAATTTCATGGCATCACATCTCTTAGAATTTTGATGATA ATTAATTGTGAGAAGCTGGCATCAATTCCAAGCGTACAACACTCCGCAGCTCTGGTGGAATTGATCATATGGAATTGCCCTGAGTTGATCTCAATTCCTG GAGATTTCCGAGAATTGAAATATTCTTTGAAGAAATTGTTTATTTATAGATGTAAAATGGGAGCTCTTCCAAGCGGACTACAATGTTGTGATGAGCTCAT CAGTTTTGATTGGCATGCTTTACGACAATTGCGTTCTCTTGTTCAATTAGAAATCAGTTGGTGTCGGAGTTTGAGTCATTTCCCAGAGGAGGATTGCTTA GGCGGCTTCACCCAACTGAAGGAATTGAGCATCGGTGGTTACTCAGAGAAGCTGGAGGCTTTTCCTGCAGGAGTTTTAAACTCAATCCAACACCTCAACT TGAGATGGGATAAACTGAAGAGTGTACCCCACGAACTACAACACCTCACTGCCCTTGAGTCACTGTGGATATGTGATTTCAGGGGAGAGGAATTTGAGGA AGCATTGCCAGAATGGTTGGCCAACCTTTCTTCTCTTCGATCTCTCTGGATTTGGGATTGCAAGAATCTCAAGTATATGCCAAGCTCAACAGTCATTCAA CGCCTCTCCAAATTAAAGGAATTGGGGATTTCAGAATGCCCACTTCTATCAGAAAATTGTAGAAAGGAGAATGGCTCCGAGTGGCCCAAGATTTCTCAGA TCCCGTCAATCATCGTAGAGGGTACACGTGTACAGGTAAGTTGGCATTAA
AA sequence Show only first row Show all	>Potri.003G025904.1 pacid=42787496 polypeptide=Potri.003G025904.1.p locus=Potri.003G025904 ID=Potri.003G025904.1.v4.1 annot-version=v4.1 MEETLKRLSSIAAEGIRLAWGFEGQLRKLNQSLTTIKDVLQDAARRAVTDESVKRWLQNLQVVAYDAEDVLDEFAYEILRKEQKKGKVCDCFSLHNPVAF RLIMGQKVKKINEALDEIRKDASGFGLGLTSLPVDSAQEVSWGPDRETDSFLDRSEIVGRKDDVSIVMDMLTSLTKHRVLSVVPIVGMVGLGKTTVAKNI LGALLQMIDKTTGGLSNLNAIMENLKKKLEKKTFFLILDDVWNEDHDKWDDLKEQLLKINRKNGNAVVVITHSKKVADMMETSPGIQHEPGRLSADQCWS IIKQKKCGGLSLLANVLGGTLRQKETQEWQSILNSRIWDSHDGNKAFRVLRLSFDYLSSPTLKKCFAYCSIFPKDFEIEREELIQLWMAEGFLRPSNGRM EDEGNKCFNDLLANSFFQDVERNAYEIVTSCKMHDLVHDLALEVSKSETLNLEVDSAVDGASHIRHLNLISCGDVESALKAGYARKLLTVFPVGDAKKLR TVFSMVDVLNGSWKFNRLRTLKLRRSDITELPDSICKPRHLRYLDVSDTAIRILPESITKLYLLETLRFTDCKSLEKFPKKMRKVSLRHLHFDDPKLVPA EVRLLTRLQTLPFFCCGSKSYGNNSVNSEDALEGLQPHPDIRSFTIKGYCGEYFPSWMSTLQLNNLTVLTLNGCSKSRQLPTLGCLPRLKILHITGMPSV KCIGNEFYSSSGSAAVLFLALKELTLSSMDGLEEWMVPGGEGDQVFPCLEKLCIEGCGKLKSIPICHPSSLVQFVIRKCDELRYLCGEFHGITSLRILMI INCEKLASIPSVQHSAALVELIIWNCPELISIPGDFRELKYSLKKLFIYRCKMGALPSGLQCCDELISFDWHALRQLRSLVQLEISWCRSLSHFPEEDCL GGFTQLKELSIGGYSEKLEAFPAGVLNSIQHLNLRWDKLKSVPHELQHLTALESLWICDFRGEEFEEALPEWLANLSSLRSLWIWDCKNLKYMPSSTVIQ RLSKLKELGISECPLLSENCRKENGSEWPKISQIPSIIVEGTRVQVSWH

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DESeq2's median of ratios [POPLAR]

Mapped by: StringTie Salmon Order by: Tissue Experiment Show only core collection Show again Show schematic diagram

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Coexpressed genes

Compare expression of checked genes Schematic diagram [FLAX] Schematic diagram [POPLAR]

*If you select 4 or less genes and then press "compare expression", expression will be shown as a graph. If you select more than 4 genes, expresion will be shown as a heat map.
*Color represents relative expression level among samples for each gene.

At best	At TF class	At alias	At description		Locus	MR	r	Symbol	NWA:WT	NWB:WT	NWA:OE-ARK2	NWB:OE-ARK2	NWA:miRNA-ARK2	NWB:miRNA-ARK2	NW 0hr	WT H20	WT-NW	TUA1dEY NW	TUA1dEY+TUB15 NW	TUA1dY+TUB9 NW	Pde NW	NWA:WT GA	NWBWT GA	TW:WT	TW:WT GA	NWA:OE-ARK2 GA	NWB:OE-ARK2 GA	TW:OE-ARK2	TW:OE-ARK2 GA	NWA:miRNA-ARK2 GA	NWB:miRNA-ARK2 GA	TW:miRNA-ARK2	TW:miRNA-ARK2 GA	TW 2hr	TW 8hr	TW 24hr	TW 48hr	TW 96hr	TW 336hr	WT ACC	35S::etr1-1 H20	35S::etr1-1 ACC	LMX5::etr1-1 H20	LMX5::etr1-1 ACC	WT-TW	TUA1dEY TW	TUA1dEY+TUB15 TW	TUA1dY+TUB9 TW	Pde TW	OW:WT	OW:WT GA	OW:OE-ARK2	OW:OE-ARK2 GA	OW:miRNA-ARK2	OW:miRNA-ARK2 GA	OW 2hr	OW 8hr	OW 24hr	OW 48hr	OW 96hr	OW 336hr	Root CTR	Root LongCold	Root LongDrougt	Root LongHeat	Root LongSalt	Root ShortCold	Root ShortDrougt	Root ShortHeat	Root ShortSalt	Ptr root	Leaf CTR	Leaf LongCold	Leaf LongDrougt	Leaf LongHeat	Leaf LongSalt	Leaf ShortCold	Leaf ShortDrougt	Leaf ShortHeat	Leaf ShortSalt	Ptr leaf	Stem CTR	Stem LongCold	Stem LongDrougt	Stem LongHeat	Stem LongSalt	Stem ShortCold	Stem ShortDrougt	Stem ShortHeat	Stem ShortSalt	Ptr shoot	Ptr xylem	Ptr phloem	Ptr fiber	Ptr vessel	Ptr fiber vessel ray
AT3G14470			NB-ARC domain-containing disea...		Potri.003G025904 [exp]	0	1
AT3G14470			NB-ARC domain-containing disea...		Potri.012G121725 [exp]	9.05	0.8811
AT1G20100			unknown protein		Potri.002G019200 [exp]	10.63	0.8004
AT4G19540		INDH, INDL	IND1(iron-sulfur protein requi...		Potri.005G220500 [exp]	14.69	0.8667
AT4G02550			unknown protein		Potri.003G047151 [exp]	15.29	0.8717
AT5G45500			RNI-like superfamily protein (...		Potri.019G036900 [exp]	16.43	0.7935
AT3G53820	C2H2ZnF		C2H2 and C2HC zinc fingers sup...		Potri.006G089301 [exp]	16.61	0.8162
AT3G05640			Protein phosphatase 2C family ...		Potri.010G006100 [exp]	17.43	0.8138
AT1G14540			Peroxidase superfamily protein...		Potri.008G022264 [exp]	18.54	0.8685
AT5G12920			Transducin/WD40 repeat-like su...		Potri.001G016800 [exp]	19.07	0.8665
					Potri.019G012483 [exp]	23.68	0.8645

Compare expression of checked genes

Potri.003G025904 coexpression network

*The number of genes in the network is adjusted within 50 genes.
*Gene name represents symbol(s) of closest Arabidopsis gene if symbol(s) for the gene itself doesn't exist.
*Circle diameter represents the number of connection with other genes within this network.
*Color for gene name represents subnetwork based on the result of network clustering.