Plant FIBer expression Database

External link	JGI Phytozome v13 [genome browser] Popgenie AspWood
Symbol
Arabidopsis homologues Show only best Show top 10	Locus ID BLAST score/e-value TF class Alias TAIR10 short description AT3G16350 311 / 6e-104 MYB Homeodomain-like superfamily protein (.1) AT5G47390 266 / 2e-86 MYB myb-like transcription factor family protein (.1) AT1G70000 160 / 1e-46 MYB myb-like transcription factor family protein (.1.2) AT5G56840 142 / 3e-40 MYB myb-like transcription factor family protein (.1) AT5G61620 143 / 1e-39 MYB myb-like transcription factor family protein (.1) AT1G74840 121 / 3e-32 MYB Homeodomain-like superfamily protein (.1.2) AT2G38090 121 / 2e-31 MYB MYB-R Duplicated homeodomain-like superfamily protein (.1) AT1G19000 120 / 2e-31 MYB Homeodomain-like superfamily protein (.1.2) AT5G58900 117 / 5e-30 MYB Homeodomain-like transcriptional regulator (.1) AT1G49010 117 / 8e-30 MYB Duplicated homeodomain-like superfamily protein (.1)
Paralogs Show only best Show top 10	Gene ID BLAST score/e-value At best hit BLAST score/e-value TAIR10 short description Potri.001G189800 [exp] 580 / 0 AT3G16350 307 / 2e-102 Homeodomain-like superfamily protein (.1) Potri.001G155300 [exp] 250 / 1e-80 AT5G47390 340 / 7e-116 myb-like transcription factor family protein (.1) Potri.003G079500 [exp] 210 / 4e-65 AT5G47390 355 / 4e-122 myb-like transcription factor family protein (.1) Potri.010G039233 [exp] 157 / 6e-45 AT1G70000 230 / 7e-75 myb-like transcription factor family protein (.1.2) Potri.008G191800 [exp] 155 / 3e-44 AT1G70000 241 / 5e-79 myb-like transcription factor family protein (.1.2) Potri.006G230500 [exp] 152 / 5e-44 AT5G56840 167 / 1e-51 myb-like transcription factor family protein (.1) Potri.006G150300 [exp] 144 / 2e-40 AT5G56840 160 / 5e-48 myb-like transcription factor family protein (.1) Potri.001G080300 [exp] 143 / 3e-39 AT5G61620 176 / 1e-52 myb-like transcription factor family protein (.1) Potri.012G073900 [exp] 123 / 3e-32 AT1G74840 152 / 2e-44 Homeodomain-like superfamily protein (.1.2)
Flax homologues Show only best Show top 10	Locus ID BLAST score/e-value At best hit BLAST score/e-value TAIR10 short description Lus10037560 [exp] 416 / 6e-145 AT3G16350 303 / 8e-101 Homeodomain-like superfamily protein (.1) Lus10038279 [exp] 388 / 6e-134 AT3G16350 279 / 5e-91 Homeodomain-like superfamily protein (.1) Lus10025822 [exp] 366 / 2e-125 AT3G16350 283 / 2e-92 Homeodomain-like superfamily protein (.1) Lus10006826 [exp] 338 / 3e-115 AT3G16350 235 / 1e-74 Homeodomain-like superfamily protein (.1) Lus10004384 [exp] 264 / 1e-85 AT5G47390 394 / 3e-137 myb-like transcription factor family protein (.1) Lus10040181 [exp] 263 / 2e-85 AT5G47390 398 / 1e-138 myb-like transcription factor family protein (.1) Lus10013289 [exp] 162 / 5e-47 AT1G70000 235 / 5e-77 myb-like transcription factor family protein (.1.2) Lus10030813 [exp] 150 / 2e-42 AT1G70000 229 / 7e-75 myb-like transcription factor family protein (.1.2) Lus10036678 [exp] 135 / 1e-37 AT1G70000 171 / 1e-52 myb-like transcription factor family protein (.1.2) Lus10010733 [exp] 129 / 6e-35 AT1G70000 182 / 1e-56 myb-like transcription factor family protein (.1.2)
PFAM info	Clan ID Clan name Pfam ID Pfam name Pfam description CL0123 [poplar] [flax] HTH PF00249 [poplar] [flax] Myb_DNA-binding Myb-like DNA-binding domain
Representative CDS sequence Show only first row Show all	>Potri.003G049100.1 pacid=42786440 polypeptide=Potri.003G049100.1.p locus=Potri.003G049100 ID=Potri.003G049100.1.v4.1 annot-version=v4.1 ATGACGCGGCGTTGTTCGCATTGCAGCAACAACGGACACAACTCTCGAACCTGTCCCACGCGCTCCTCTCTCGCGTCTTCGTCTTCTTCTCCTTTATCCG GAGTGAAGCTCTTCGGCGTGAGGCTGACCGATGGGTCAATCATTAAAAAGAGTGCGAGTATGGGAAACTTGTCGGTGCACTACCATTCGTCTTCATCAGC TGCCGCTTCGCCTAATCCTGACTCTCCTCTATTTGATCATGTCCGTGATTCGGCTCATGTACCTGACGGCTATTTGTCTGATGACCCGGCTGCCCATGCT AGCTGCTCTACCAATCAACGCGGAGACAGAAAAAAAGGTGTCCCATGGACTGAAGACGAGCATCGGCTGTTCTTAATTGGTCTCCAAAAATTGGGTAAAG GAGATTGGCGTGGAATTGCTCGAAACTTTGTGGTATCCAGGACTCCCACCCAGGTGGCAAGCCACGCTCAGAAATTTTTCATCCGACAGAGCAATGCCAC TCGGAGAAAGAGACGGTCCAGTCTTTTTGATATGGTTCCAGAAATGGCCACAGATCCGCAGCCAGTGCCAGAAGAGCAAGAGTTGCAATCTTCTTCTCGG GCAGGAGATACTGGTAATGCAGATTCACTACCTTCATTGAATCTCTCTCTCAAGCCAGAATTTGAACCCATGGATATTGCATCTCAAGAGCTAGTCAAGG AACCTGATAAAACCGTGATGGGGCTGAGTGAAATCAAACCAATTGTTCCTAGTTCAAATGAATCCAGCACAGTTGTTTCAGGTTCGAGTGAATTCACAGC AGTTCCTGGATTCTTCCCAGCTTACATGCCAGTTCCCTATCCGTATTGGCCTCCAAATACCACCTCCTTTGAAGAAGGTACCGTTGCAGCGGCTTCGCAT CATGAGGTCCTGAAGCCAGTTCCAATCATTCCAAAGGAGCCTTTTGTTGTAGATGAACTGGTCGGTATGTCTCATCTGCATCTAGGAGAGACTGATAGAC ACCACAGGGAGCCTTCACCACTCTCCCTGAAACTAATCGGGGAGCCATCAAGGCAGTCAGCGTTTCATGCAAGTGCTCCAGCTGGTGGATCAGATTTAAG TAATGGCAAGGCTAGTTCCATCCAAGCAGTTTGA
AA sequence Show only first row Show all	>Potri.003G049100.1 pacid=42786440 polypeptide=Potri.003G049100.1.p locus=Potri.003G049100 ID=Potri.003G049100.1.v4.1 annot-version=v4.1 MTRRCSHCSNNGHNSRTCPTRSSLASSSSSPLSGVKLFGVRLTDGSIIKKSASMGNLSVHYHSSSSAAASPNPDSPLFDHVRDSAHVPDGYLSDDPAAHA SCSTNQRGDRKKGVPWTEDEHRLFLIGLQKLGKGDWRGIARNFVVSRTPTQVASHAQKFFIRQSNATRRKRRSSLFDMVPEMATDPQPVPEEQELQSSSR AGDTGNADSLPSLNLSLKPEFEPMDIASQELVKEPDKTVMGLSEIKPIVPSSNESSTVVSGSSEFTAVPGFFPAYMPVPYPYWPPNTTSFEEGTVAAASH HEVLKPVPIIPKEPFVVDELVGMSHLHLGETDRHHREPSPLSLKLIGEPSRQSAFHASAPAGGSDLSNGKASSIQAV

---

DESeq2's median of ratios [POPLAR]

Mapped by: StringTie Salmon Order by: Tissue Experiment Show only core collection Show again Show schematic diagram

---

Coexpressed genes

Compare expression of checked genes Schematic diagram [FLAX] Schematic diagram [POPLAR]

*If you select 4 or less genes and then press "compare expression", expression will be shown as a graph. If you select more than 4 genes, expresion will be shown as a heat map.
*Color represents relative expression level among samples for each gene.

At best	At TF class	At alias	At description		Locus	MR	r	Symbol	NWA:WT	NWB:WT	NWA:OE-ARK2	NWB:OE-ARK2	NWA:miRNA-ARK2	NWB:miRNA-ARK2	NW 0hr	WT H20	WT-NW	TUA1dEY NW	TUA1dEY+TUB15 NW	TUA1dY+TUB9 NW	Pde NW	NWA:WT GA	NWBWT GA	TW:WT	TW:WT GA	NWA:OE-ARK2 GA	NWB:OE-ARK2 GA	TW:OE-ARK2	TW:OE-ARK2 GA	NWA:miRNA-ARK2 GA	NWB:miRNA-ARK2 GA	TW:miRNA-ARK2	TW:miRNA-ARK2 GA	TW 2hr	TW 8hr	TW 24hr	TW 48hr	TW 96hr	TW 336hr	WT ACC	35S::etr1-1 H20	35S::etr1-1 ACC	LMX5::etr1-1 H20	LMX5::etr1-1 ACC	WT-TW	TUA1dEY TW	TUA1dEY+TUB15 TW	TUA1dY+TUB9 TW	Pde TW	OW:WT	OW:WT GA	OW:OE-ARK2	OW:OE-ARK2 GA	OW:miRNA-ARK2	OW:miRNA-ARK2 GA	OW 2hr	OW 8hr	OW 24hr	OW 48hr	OW 96hr	OW 336hr	Root CTR	Root LongCold	Root LongDrougt	Root LongHeat	Root LongSalt	Root ShortCold	Root ShortDrougt	Root ShortHeat	Root ShortSalt	Ptr root	Leaf CTR	Leaf LongCold	Leaf LongDrougt	Leaf LongHeat	Leaf LongSalt	Leaf ShortCold	Leaf ShortDrougt	Leaf ShortHeat	Leaf ShortSalt	Ptr leaf	Stem CTR	Stem LongCold	Stem LongDrougt	Stem LongHeat	Stem LongSalt	Stem ShortCold	Stem ShortDrougt	Stem ShortHeat	Stem ShortSalt	Ptr shoot	Ptr xylem	Ptr phloem	Ptr fiber	Ptr vessel	Ptr fiber vessel ray
AT3G16350	MYB		Homeodomain-like superfamily p...		Potri.003G049100 [exp]	0	1
AT3G58030			RING/U-box superfamily protein...		Potri.006G193600 [exp]	6.48	0.9100
AT1G49620		ICN6, ICK5, KRP...	KIP-RELATED PROTEIN 7, Cyclin-...		Potri.009G103600 [exp]	6.63	0.9270	Pt-ICK5.1,7
					Potri.013G031800 [exp]	6.92	0.9171
AT1G06210			ENTH/VHS/GAT family protein (....		Potri.005G225000 [exp]	7.07	0.8970
AT5G28750			Bacterial sec-independent tran...		Potri.005G053400 [exp]	8.48	0.9061
AT2G32560			F-box family protein (.1)		Potri.009G068100 [exp]	10.39	0.9199
AT5G22300		AtNIT4, NIT4	nitrilase 4 (.1)		Potri.004G199600 [exp]	13.34	0.8725	Pt-NIT2.2
AT5G64840		ABCF5, ATGCN5	ATP-binding cassette F5, gener...		Potri.005G084800 [exp]	14.28	0.8855	GCN2.2
AT3G01470	HD	HD-ZIP-1, HAT5,...	HOMEODOMAIN PROTEIN FROM ARABI...		Potri.012G070900 [exp]	16.15	0.8933
AT3G21760		HYR1	HYPOSTATIN RESISTANCE 1, UDP-G...		Potri.016G014100 [exp]	16.70	0.9095

Compare expression of checked genes

Potri.003G049100 coexpression network

*The number of genes in the network is adjusted within 50 genes.
*Gene name represents symbol(s) of closest Arabidopsis gene if symbol(s) for the gene itself doesn't exist.
*Circle diameter represents the number of connection with other genes within this network.
*Color for gene name represents subnetwork based on the result of network clustering.