Plant FIBer expression Database

External link	JGI Phytozome v13 [genome browser] Popgenie AspWood
Symbol
Arabidopsis homologues Show only best Show top 10	Locus ID BLAST score/e-value TF class Alias TAIR10 short description AT3G14470 614 / 0 NB-ARC domain-containing disease resistance protein (.1) AT3G14460 522 / 1e-161 LRR and NB-ARC domains-containing disease resistance protein (.1) AT3G50950 191 / 1e-49 ZAR1 HOPZ-ACTIVATED RESISTANCE 1 (.1.2) AT1G59218 180 / 9e-46 Disease resistance protein (CC-NBS-LRR class) family (.1), Disease resistance protein (CC-NBS-LRR class) family (.2) AT1G58848 180 / 9e-46 Disease resistance protein (CC-NBS-LRR class) family (.1), Disease resistance protein (CC-NBS-LRR class) family (.2) AT5G35450 172 / 1e-43 Disease resistance protein (CC-NBS-LRR class) family (.1) AT1G58602 171 / 9e-43 LRR and NB-ARC domains-containing disease resistance protein (.1.2) AT1G58807 170 / 1e-42 Disease resistance protein (CC-NBS-LRR class) family (.1), Disease resistance protein (CC-NBS-LRR class) family (.2) AT1G53350 169 / 2e-42 Disease resistance protein (CC-NBS-LRR class) family (.1) AT3G07040 165 / 4e-41 RPS3, RPM1 RESISTANCE TO PSEUDOMONAS SYRINGAE 3, RESISTANCE TO P. SYRINGAE PV MACULICOLA 1, NB-ARC domain-containing disease resistance protein (.1)
Paralogs Show only best Show top 10	Gene ID BLAST score/e-value At best hit BLAST score/e-value TAIR10 short description Potri.001G029300 [exp] 1087 / 0 AT3G14470 676 / 0.0 NB-ARC domain-containing disease resistance protein (.1) Potri.005G007001 [exp] 1068 / 0 AT3G14470 647 / 0.0 NB-ARC domain-containing disease resistance protein (.1) Potri.003G200800 [exp] 1045 / 0 AT3G14460 509 / 7e-157 LRR and NB-ARC domains-containing disease resistance protein (.1) Potri.T126806 [exp] 974 / 0 AT3G14470 587 / 0.0 NB-ARC domain-containing disease resistance protein (.1) Potri.007G137101 [exp] 962 / 0 AT3G14470 616 / 0.0 NB-ARC domain-containing disease resistance protein (.1) Potri.T127106 [exp] 954 / 0 AT3G14470 594 / 0.0 NB-ARC domain-containing disease resistance protein (.1) Potri.003G200500 [exp] 952 / 0 AT3G14470 594 / 0.0 NB-ARC domain-containing disease resistance protein (.1) Potri.003G200200 [exp] 941 / 0 AT3G14470 634 / 0.0 NB-ARC domain-containing disease resistance protein (.1) Potri.T126706 [exp] 903 / 0 AT3G14470 565 / 0.0 NB-ARC domain-containing disease resistance protein (.1)
Flax homologues Show only best Show top 10	Locus ID BLAST score/e-value At best hit BLAST score/e-value TAIR10 short description Lus10024173 [exp] 973 / 0 AT3G14460 681 / 0.0 LRR and NB-ARC domains-containing disease resistance protein (.1) Lus10039509 [exp] 971 / 0 AT3G14460 613 / 0.0 LRR and NB-ARC domains-containing disease resistance protein (.1) Lus10007261 [exp] 941 / 0 AT3G14460 654 / 0.0 LRR and NB-ARC domains-containing disease resistance protein (.1) Lus10039540 [exp] 850 / 0 AT3G14470 727 / 0.0 NB-ARC domain-containing disease resistance protein (.1) Lus10005321 [exp] 648 / 0 AT3G14460 607 / 0.0 LRR and NB-ARC domains-containing disease resistance protein (.1) Lus10026109 [exp] 623 / 0 AT3G14470 598 / 0.0 NB-ARC domain-containing disease resistance protein (.1) Lus10026132 [exp] 601 / 0 AT3G14460 594 / 0.0 LRR and NB-ARC domains-containing disease resistance protein (.1) Lus10016316 [exp] 537 / 3e-169 AT3G14470 494 / 6e-156 NB-ARC domain-containing disease resistance protein (.1) Lus10042117 [exp] 376 / 1e-111 AT3G14470 354 / 2e-105 NB-ARC domain-containing disease resistance protein (.1) Lus10005218 [exp] 377 / 8e-111 AT3G14470 379 / 2e-113 NB-ARC domain-containing disease resistance protein (.1)
PFAM info	Clan ID Clan name Pfam ID Pfam name Pfam description CL0023 [poplar] [flax] P-loop_NTPase PF00931 [poplar] [flax] NB-ARC NB-ARC domain
Representative CDS sequence Show only first row Show all	>Potri.003G055600.5 pacid=42786277 polypeptide=Potri.003G055600.5.p locus=Potri.003G055600 ID=Potri.003G055600.5.v4.1 annot-version=v4.1 ATGGCTGAAGCACTTGTAGGAGGATCATTTCTCTCTGCTTTCCTTCAGGTTTTGTTTGATAGGATGGCTTCTCCTCAGGTTTGGGGCTTCTTCAAAGGCC AAAAGCTTGATGATGGACTGCTGAAGGACTTGAAGGCAACAATGAGATCTGTTAACAAACTGCTCAATGATGCAGAGGAGAAGCAGATAGCTGATTCAGA GGTGAAAGATTGGCTTGATGATCTCAAAGATGCTGTCTATGAAGCCGATGACTTCTTCGATGAGATTGCTTATGAAGCTATGCGATTGGAGGTGGAAGCT GGCTCTCGAACCAGCACTGATCAGGGGGTAATCTTCTTGTCTTCTTTTAGTCCATTCAATAAGGTGAAGGAGAAAATGGTGGCAAAGTTGGAAGAGATTT CTCGGACACTTGAACGACTATTAAAGAGAAATGGTGTCCTTGGTCTGAAAGAGGTCATTGGCCAGAAAGAATCAACCCAGAAATTACCGACTACTTCTCT GACAGAAGATTCATTTTTTTATGGCAGGGAAGATGATCAAGAAACCATAGTGAAATTGCTGCTGTCACCTGATGCAAATGGAAAAACTGTAGGTGCTATT CCCATAGTCGGTATGGGAGGGGTTGGTAAAACTACTCTGTCTCAGTTTGTCTTGAATGACAGTAGAGTACAAAAGGGGTTTGATCTCAAGGCCTGGGTTT GTGTTTCCGTAGATTTTGATGTGCACAAGCTAACAAAAGATATCCTTATGGAGGTTGGTTCACAAAATTGTGATGCCAAGACTTTGAATGGCCTTCATCA GGAGCTGGAGGAGAAATTGAAGGGGAAAAAGGTTTTGCTTGTTTTGGATGATGTTTGGAGCAGTGACCAAAGTCGATGGGACTTCTTATTGAAACCTTTC AAGTCTGTGGCAGAAGGAAGTAAGCTCATTGTTACTACACGCAATGAGAACATAGTGCCCGCCATGCACCGTGCCATACCGCGCAACCAAAACAAAGAAT CAAGCCCATGCCCTATTTCAATTCATCGTTTGATGGGATTAACTGAAGACATTTGCTGGATTTTGTTTAAAGAGCATGCATTTAATGGTGAAGATCCCAG AGAACACCCTGATTTACAAGGAATCAGTAGACAAATAGCAAGCAAGTGCAAAGGTCTACCTTTAGCTGCAAAAACGCTTGGACGTCTCCTATGTTTTGAA AGAAATGCTGAGAAGTGGGAGGAGATCTTGAAGAGCCACATATGGGAATCGCCGAACGATGAGATTATTCCAGCTCTTCAATTGAGCTATTACTATCTTC CACCCCATCTAAAAAGATGCTTTGCTTTTTGTTCAATATATCCTAAGGATTACAGGTTTCTAAAGGAGGATTTAGTTCGTTTATGGTTGGCAGAGGGCTT AGTTCAACCCAAAGGATGTAAAGAGATTGTAAAACTCGGGGAAGAGTACTTCGATGATCTTCTATCAAGATCACTTTTTCAACGATCAAGATGCAATGAA TCAGTTTTTGTTATGCATGACCTCATAAATGACTTAGCAAAAGTTGTATCTGGAGAATTCTCCTTCACATTGGTGGGTAACTATTCGAGCAAGATTAGTG GAAGAGTCCGTCATTTGTCATTCTCGACAACTGCCTATGATGCCTTGGATAAATTTGAGGGCATTGATAAAGCCCAAGTTTTGCGCACATTCTTACCATT CTCACATCGGCGGTCTTCAAGAGTCGATAGCAAGATACAGCATGATCTATTACCGACCTTCATGCGCTTACGAGTTTTATCTTTGGCTCCATATCAAAAT GTAGTTCAGTTGCATGATTCAATTGGCCGCTTAAAACATTTGCGATACTTGGACCTCACTGCAACATCATTGAAAAAGCTACCTGAATTTGTATGTAGTT TGTATAATTTACAAACATTGTTGTTGGACAGCTGCATGTGCCTTGTTGAATTGCCTAATTCAATTGGCAATTTGAAGAATTTACTTTTTCTGAGACTTCA TTGGACAGCAATCCAAAGTTTGCCTGAATCCATAGTCAATTTGTCAAATCTGCATACTCTGGTCTTGAGTGAGTGCAAAAACCTCACTGAGCTGCCAACC AACATGGGAAAACTCACAAAGCTTGAGAGGTTGACTGATTTCTTTGTGGGAAAACAGAGCGGCTCTGGCATTGAAGACTTGGGGAAACTTCAAAATCTTC AGGGAGAACTTCGTATTTGGAATCTCCAAAATGTTTTTCCTTCTCAAGATGGTGAAACCGCCAAGTTGTTGGATAAGCAGCGTGTTAAGGAATTGGAGTT GAGATGGGCTGGTGATACCGAAGACTCACAACATGAAAGACGGGTACTTGAGAAATTGAAGCCTCACAAAGATGTGAAACGTCTTTCCATTATTGGTTTC GGGGGTACACGCTTCCCGGATTGGGTGGGAAGTTCTTCCTTCCCAAAGATCGTATTCTTAAAGCTCAAAGGATGTAATTACTGCACCTCCTTGCCTCCAC TTGGGCAATTAGTGTCTTTGAAGGAGCTAAGGATTGAGGCATTTGATTTGATTGATGTAGTTTTCCCTGAGTTGTTCGGAAATGGCGAGTCCAAGATTAG AATTTTGAGTTTTGAAGATATGAAAGAATGGCGTGAATGGAATTCAGATGGTGTCACTTTCCCTCTCCTTCAATTACTTCAGATAAGACGTTGTCCCGAG CTAAGAGGTGCCTTGCCTGGTCACCTTCCTGCTCTAGAGGAACTTTGCATTGACAGATGTCCGCTGCTCATGGCTTCGCTTCCGAGGGCTCCAACCATTC GTCAAATGGAATTGTTTGACACGTCTCGTTCTGTGCAGCTAACAAAATATCAATCAGGGATGCTGAGTCTCATGGTTCAGAAATTTCACTCTCAAAATTC ACCATTACAAGGAATTGAGCACATAGGAGTTTCTACTACTTTGGACAAAATTGAAGTCCATTGCTGTGATTCACTCAAGCTCTTTCAGCCTAAGTCGTTC CCAAATTTGGAGATTCTTCACATCTGGGATTCTCCACATTTGGAGTCTCTTGTGGATTTGAATACCAGTTCCTTGTCAATTTCTTCTCTTCATATACAAA GCCTGTCTTTCCCAAATTTGAGTGAGCTTTGTGTAGGCCACTGCTCAAAGTTGAAGTCGTTGCCTCAAGGTATGCACTCCCTCCTCCCTTCCCTTAAGTC ATTGTCTATAGAAGATTGCCCAGAACTTGAGTCATTTCCTGAAGGGGGTTTGCCTTCCAAATTACAATCACTTAACGTCCAAAATTGCAACAAACTCATC GACAGCCGGAAGCATTGGGGTTTGCAATCACTCCTCTCTCTTTCAAAATTTAGAATTGGTTATAATGAAGATGTGGAATCCTTTCCTGAGGAAATGCTGC TGCCCTCAACTCTTATATCTCTTGAATTATCTTGTCTTGAAAATCTGAAATATCTTGATTATAAGGGGGTTCGACACCTTACCTCTCTTGCAAAATTGAC TATCAGTTCCTGCCCCAAGCTCGAGTCCTTGCCAGAAGAGGGTTTTGCTGCCTCCAAATTACAGTCACTTGCAATATGGGGTTGCCACAGTCTCATTGCA CGCCGCATGCAATGGGATTTATGTAAGCTCCCCTCTCTTTCCCGCTTCAGAATTGGTTATTGTGATGATGTGGAATCCTTTCCAGAGGAGACACTGCTGC CCTCAACTCTTACATCACTTGAAATTTGGAGTCTTGAAAAACTGAAATCTCTGAACTACAAGGGGCTTCAACACCTCACCTCTCTTGCAAGACTGAAGAT CAGGTTTTGCCGTAATCTCCATTCCATGCCGGAAGAGAAGCTGCCCTCCTCCCTTACTTATCTTGACATCTGCGGCTGTCCTGTTCTGGAAAAGAGGTGT GAAAAGGAGAAAGGGGAAGATTGGCCCAAGATTTCTCACATCCCCAACATAAATAACTGA
AA sequence Show only first row Show all	>Potri.003G055600.5 pacid=42786277 polypeptide=Potri.003G055600.5.p locus=Potri.003G055600 ID=Potri.003G055600.5.v4.1 annot-version=v4.1 MAEALVGGSFLSAFLQVLFDRMASPQVWGFFKGQKLDDGLLKDLKATMRSVNKLLNDAEEKQIADSEVKDWLDDLKDAVYEADDFFDEIAYEAMRLEVEA GSRTSTDQGVIFLSSFSPFNKVKEKMVAKLEEISRTLERLLKRNGVLGLKEVIGQKESTQKLPTTSLTEDSFFYGREDDQETIVKLLLSPDANGKTVGAI PIVGMGGVGKTTLSQFVLNDSRVQKGFDLKAWVCVSVDFDVHKLTKDILMEVGSQNCDAKTLNGLHQELEEKLKGKKVLLVLDDVWSSDQSRWDFLLKPF KSVAEGSKLIVTTRNENIVPAMHRAIPRNQNKESSPCPISIHRLMGLTEDICWILFKEHAFNGEDPREHPDLQGISRQIASKCKGLPLAAKTLGRLLCFE RNAEKWEEILKSHIWESPNDEIIPALQLSYYYLPPHLKRCFAFCSIYPKDYRFLKEDLVRLWLAEGLVQPKGCKEIVKLGEEYFDDLLSRSLFQRSRCNE SVFVMHDLINDLAKVVSGEFSFTLVGNYSSKISGRVRHLSFSTTAYDALDKFEGIDKAQVLRTFLPFSHRRSSRVDSKIQHDLLPTFMRLRVLSLAPYQN VVQLHDSIGRLKHLRYLDLTATSLKKLPEFVCSLYNLQTLLLDSCMCLVELPNSIGNLKNLLFLRLHWTAIQSLPESIVNLSNLHTLVLSECKNLTELPT NMGKLTKLERLTDFFVGKQSGSGIEDLGKLQNLQGELRIWNLQNVFPSQDGETAKLLDKQRVKELELRWAGDTEDSQHERRVLEKLKPHKDVKRLSIIGF GGTRFPDWVGSSSFPKIVFLKLKGCNYCTSLPPLGQLVSLKELRIEAFDLIDVVFPELFGNGESKIRILSFEDMKEWREWNSDGVTFPLLQLLQIRRCPE LRGALPGHLPALEELCIDRCPLLMASLPRAPTIRQMELFDTSRSVQLTKYQSGMLSLMVQKFHSQNSPLQGIEHIGVSTTLDKIEVHCCDSLKLFQPKSF PNLEILHIWDSPHLESLVDLNTSSLSISSLHIQSLSFPNLSELCVGHCSKLKSLPQGMHSLLPSLKSLSIEDCPELESFPEGGLPSKLQSLNVQNCNKLI DSRKHWGLQSLLSLSKFRIGYNEDVESFPEEMLLPSTLISLELSCLENLKYLDYKGVRHLTSLAKLTISSCPKLESLPEEGFAASKLQSLAIWGCHSLIA RRMQWDLCKLPSLSRFRIGYCDDVESFPEETLLPSTLTSLEIWSLEKLKSLNYKGLQHLTSLARLKIRFCRNLHSMPEEKLPSSLTYLDICGCPVLEKRC EKEKGEDWPKISHIPNINN

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DESeq2's median of ratios [POPLAR]

Mapped by: StringTie Salmon Order by: Tissue Experiment Show only core collection Show again Show schematic diagram

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Coexpressed genes

Compare expression of checked genes Schematic diagram [FLAX] Schematic diagram [POPLAR]

*If you select 4 or less genes and then press "compare expression", expression will be shown as a graph. If you select more than 4 genes, expresion will be shown as a heat map.
*Color represents relative expression level among samples for each gene.

At best	At TF class	At alias	At description		Locus	MR	r	Symbol	NWA:WT	NWB:WT	NWA:OE-ARK2	NWB:OE-ARK2	NWA:miRNA-ARK2	NWB:miRNA-ARK2	NW 0hr	WT H20	WT-NW	TUA1dEY NW	TUA1dEY+TUB15 NW	TUA1dY+TUB9 NW	Pde NW	NWA:WT GA	NWBWT GA	TW:WT	TW:WT GA	NWA:OE-ARK2 GA	NWB:OE-ARK2 GA	TW:OE-ARK2	TW:OE-ARK2 GA	NWA:miRNA-ARK2 GA	NWB:miRNA-ARK2 GA	TW:miRNA-ARK2	TW:miRNA-ARK2 GA	TW 2hr	TW 8hr	TW 24hr	TW 48hr	TW 96hr	TW 336hr	WT ACC	35S::etr1-1 H20	35S::etr1-1 ACC	LMX5::etr1-1 H20	LMX5::etr1-1 ACC	WT-TW	TUA1dEY TW	TUA1dEY+TUB15 TW	TUA1dY+TUB9 TW	Pde TW	OW:WT	OW:WT GA	OW:OE-ARK2	OW:OE-ARK2 GA	OW:miRNA-ARK2	OW:miRNA-ARK2 GA	OW 2hr	OW 8hr	OW 24hr	OW 48hr	OW 96hr	OW 336hr	Root CTR	Root LongCold	Root LongDrougt	Root LongHeat	Root LongSalt	Root ShortCold	Root ShortDrougt	Root ShortHeat	Root ShortSalt	Ptr root	Leaf CTR	Leaf LongCold	Leaf LongDrougt	Leaf LongHeat	Leaf LongSalt	Leaf ShortCold	Leaf ShortDrougt	Leaf ShortHeat	Leaf ShortSalt	Ptr leaf	Stem CTR	Stem LongCold	Stem LongDrougt	Stem LongHeat	Stem LongSalt	Stem ShortCold	Stem ShortDrougt	Stem ShortHeat	Stem ShortSalt	Ptr shoot	Ptr xylem	Ptr phloem	Ptr fiber	Ptr vessel	Ptr fiber vessel ray
AT3G14470			NB-ARC domain-containing disea...		Potri.003G055600 [exp]	0	1
AT2G45910			U-box domain-containing protei...		Potri.001G239100 [exp]	5.91	0.7740
AT2G39380		ATEXO70H2	exocyst subunit exo70 family p...		Potri.001G234600 [exp]	23.30	0.7798
AT1G12990			beta-1,4-N-acetylglucosaminylt...		Potri.008G186000 [exp]	43.35	0.7574
AT2G47490		ATNDT1	NAD+ transporter 1, ARABIDOPSI...		Potri.002G200900 [exp]	45.50	0.7459
AT5G04020			calmodulin binding (.1)		Potri.006G043900 [exp]	61.70	0.7149
AT5G65600			Concanavalin A-like lectin pro...		Potri.016G031300 [exp]	118.91	0.6972	Pt-LEC.3
AT2G30020			Protein phosphatase 2C family ...		Potri.001G278500 [exp]	158.43	0.6934
AT2G19560		ESSP1, AtTHP1, ...	ectopic expression of seed sto...		Potri.006G221700 [exp]	185.40	0.7008
AT3G53310	B3	REM20	AP2/B3-like transcriptional fa...		Potri.003G016733 [exp]	252.22	0.6679

Compare expression of checked genes

Potri.003G055600 coexpression network

*The number of genes in the network is adjusted within 50 genes.
*Gene name represents symbol(s) of closest Arabidopsis gene if symbol(s) for the gene itself doesn't exist.
*Circle diameter represents the number of connection with other genes within this network.
*Color for gene name represents subnetwork based on the result of network clustering.