Plant FIBer expression Database

External link	JGI Phytozome v13 [genome browser] Popgenie AspWood
Symbol
Arabidopsis homologues Show only best Show top 10	Locus ID BLAST score/e-value TF class Alias TAIR10 short description AT1G15890 64 / 6e-10 Disease resistance protein (CC-NBS-LRR class) family (.1) AT1G58602 62 / 2e-09 LRR and NB-ARC domains-containing disease resistance protein (.1.2) AT5G35450 62 / 3e-09 Disease resistance protein (CC-NBS-LRR class) family (.1) AT5G43470 60 / 1e-08 HRT, RCY1, RPP8 RECOGNITION OF PERONOSPORA PARASITICA 8, RESISTANT TO CMV\(Y\) 1, HYPERSENSITIVE RESPONSE TO TCV, Disease resistance protein (CC-NBS-LRR class) family (.1), Disease resistance protein (CC-NBS-LRR class) family (.2) AT4G26090 58 / 3e-08 RPS2 RESISTANT TO P. SYRINGAE 2, NB-ARC domain-containing disease resistance protein (.1) AT1G61310 57 / 6e-08 LRR and NB-ARC domains-containing disease resistance protein (.1) AT5G43740 57 / 8e-08 Disease resistance protein (CC-NBS-LRR class) family (.1), Disease resistance protein (CC-NBS-LRR class) family (.2) AT5G43730 57 / 9e-08 Disease resistance protein (CC-NBS-LRR class) family (.1) AT1G59620 57 / 9e-08 CW9 Disease resistance protein (CC-NBS-LRR class) family (.1) AT1G61190 57 / 9e-08 LRR and NB-ARC domains-containing disease resistance protein (.1)
Paralogs Show only best Show top 10	Gene ID BLAST score/e-value At best hit BLAST score/e-value TAIR10 short description Potri.001G172300 [exp] 1855 / 0 AT1G15890 64 / 4e-10 Disease resistance protein (CC-NBS-LRR class) family (.1) Potri.001G261300 [exp] 69 / 2e-11 AT3G14470 538 / 2e-170 NB-ARC domain-containing disease resistance protein (.1) Potri.003G200500 [exp] 68 / 3e-11 AT3G14470 594 / 0.0 NB-ARC domain-containing disease resistance protein (.1) Potri.T127106 [exp] 68 / 3e-11 AT3G14470 594 / 0.0 NB-ARC domain-containing disease resistance protein (.1) Potri.003G150200 [exp] 63 / 1e-09 AT5G43470 420 / 2e-132 RECOGNITION OF PERONOSPORA PARASITICA 8, RESISTANT TO CMV\(Y\) 1, HYPERSENSITIVE RESPONSE TO TCV, Disease resistance protein (CC-NBS-LRR class) family (.1), Disease resistance protein (CC-NBS-LRR class) family (.2) Potri.001G261600 [exp] 62 / 2e-09 AT3G14470 628 / 0.0 NB-ARC domain-containing disease resistance protein (.1) Potri.003G200200 [exp] 62 / 3e-09 AT3G14470 634 / 0.0 NB-ARC domain-containing disease resistance protein (.1) Potri.001G444000 [exp] 61 / 8e-09 AT4G27190 224 / 8e-60 NB-ARC domain-containing disease resistance protein (.1) Potri.003G149800 [exp] 59 / 2e-08 AT5G43470 421 / 4e-133 RECOGNITION OF PERONOSPORA PARASITICA 8, RESISTANT TO CMV\(Y\) 1, HYPERSENSITIVE RESPONSE TO TCV, Disease resistance protein (CC-NBS-LRR class) family (.1), Disease resistance protein (CC-NBS-LRR class) family (.2)
Flax homologues Show only best Show top 10	Locus ID BLAST score/e-value At best hit BLAST score/e-value TAIR10 short description Lus10005321 [exp] 58 / 6e-08 AT3G14460 607 / 0.0 LRR and NB-ARC domains-containing disease resistance protein (.1) Lus10026109 [exp] 57 / 1e-07 AT3G14470 598 / 0.0 NB-ARC domain-containing disease resistance protein (.1) Lus10002736 [exp] 55 / 2e-07 AT3G14470 317 / 1e-98 NB-ARC domain-containing disease resistance protein (.1) Lus10026132 [exp] 56 / 3e-07 AT3G14460 594 / 0.0 LRR and NB-ARC domains-containing disease resistance protein (.1) Lus10016316 [exp] 55 / 4e-07 AT3G14470 494 / 6e-156 NB-ARC domain-containing disease resistance protein (.1) Lus10014922 [exp] 51 / 7e-06 AT3G07040 523 / 1e-171 RESISTANCE TO PSEUDOMONAS SYRINGAE 3, RESISTANCE TO P. SYRINGAE PV MACULICOLA 1, NB-ARC domain-containing disease resistance protein (.1) Lus10005218 [exp] 51 / 7e-06 AT3G14470 379 / 2e-113 NB-ARC domain-containing disease resistance protein (.1) Lus10024173 [exp] 50 / 1e-05 AT3G14460 681 / 0.0 LRR and NB-ARC domains-containing disease resistance protein (.1) Lus10014712 [exp] 50 / 1e-05 AT3G07040 492 / 3e-159 RESISTANCE TO PSEUDOMONAS SYRINGAE 3, RESISTANCE TO P. SYRINGAE PV MACULICOLA 1, NB-ARC domain-containing disease resistance protein (.1) Lus10039509 [exp] 45 / 0.0004 AT3G14460 613 / 0.0 LRR and NB-ARC domains-containing disease resistance protein (.1)
PFAM info	Clan ID Clan name Pfam ID Pfam name Pfam description CL0023 [poplar] [flax] P-loop_NTPase PF00931 [poplar] [flax] NB-ARC NB-ARC domain
Representative CDS sequence Show only first row Show all	>Potri.003G062100.1 pacid=42786663 polypeptide=Potri.003G062100.1.p locus=Potri.003G062100 ID=Potri.003G062100.1.v4.1 annot-version=v4.1 ATGGAAGCTTTGCAAGTTATTTCTTCTGCAACAGAAATAATCTCAAGTATGGTAGGGGTTGTCAGTGCATTAGATCAGGCTTCTAGGAATCTTGATGAAG CTCCTAAGAAAATCCGAATGCTAGAGGAATTTGTCTATGATCTTGCGAACTTGACGCGTCAAATTAAGCAAAAACATGTCTACAAGCTTCATAACCCCCA GTTAGATCACCAAATCCAAAGCTTGAATGTGCTGATAGAACGAATGCATCCAAACATTATGAAGGCAAGAAGGATTGTGTCAAGAAGTAGGGTAAAGAAT TTGGCCAAGGTCGTGTGGAGTTCTATGGCGGGAGACCCTCTTAGCAAACTGATAAATACCATTAGAGATGATTTGAATTGGTGGTTTGAGTCTCAAAGGT TTGCCCAACATGTTCAGATGGTGATAGAATCAACAGCACAGGATGTCCCAGTTCGATTGAAAATAAAGGTTGAATTAGGATGGCCAATTTCTAGTAAATG CCACTTTGTGAGAAACTTATTGGAACAAGAAGTTTCTCATCGGGTTCTTCTAATTGTTGGGTTATCGGGTATCGGAAAGTCGTGCTTGGCTCGACAAGTA GCTTCTAACCCTCCTACTAAGTTTGTGGATGGAGCAGTTGAACTTGGATTTGGCCAATGGTGTAGTAGAAATGCTTGCAATGGAAATAAGGATGAATACC AGAGACGTCTTGCAAGAAAAATCTCTAAATTTCTGGTGCAAATTGGATTTTGGAAGAAGATTAGAGATGAAGATAATGGAGATCTTGAATATGTTTGCTG TATTCTTCAAGAAGCACTGTATGGAAAGAGCATTCTCATACTTCTTGATGATGTGTGGGAGCAGGATATAGTTGAGCGGTTTGCACGGCTGTATGATAAT GATTGCAAGTATTTAGTGACGACAAGAAATGAAGCTGTCTGTGAAATAACAGAAGCCGAGAAGGTTGAGTTGAGCAAAGATGACACAAGGGAGATAAGCA AGGCAATCCTTCAATACCACAGTCTACTTAGCGTGGAAGAACTACCGGGCGTAGCAGAGACCTTGCTTGAACGCTGTGGCCACCACCCTCTGACAGTTGC TGTTATGGGTAAAGCTCTTAGGAAAGAAGTAAGAGCTGAGAAGTGGGAAAAGGCCATCACAAACTTATCAACCTTTGCCACACGTGCACCTGGTCCTGTC TCATATGTAAATGAAAAGGAAGCTGAGAGCACCTTAACTATTTTTGGGTCGTTTGAGTTCAGTCTGGAAGCTATGCCTAGAGATTCTAAAAGGCTCTTTA TAGCTCTAGCTTCCCTTTCATGGGCAGCACCTGTACCGGAAGCTTGTCTGGAGGCTGTTTGGTCTGTTCTTGGGGAGGAGATATTGTTCCCTCTTATTGT CTGCAAGCTTGTTGAAGGTTCTTTGCTGATTAAAACGGAGATGGATCCCATGTACCTAGTTCACGACATGGTTTCTTTGTATCTAGATAGCAAGGCAGAT GACTCTACTGGGATACTACTAAATGAATATTCACCGGAAGAGACTGCTATTATTTGTCCTTGGCTGCTTATTTTTGGAAAAGAAAACGTCAAAAGGATTG CTGAAAAAAGGACGGAGTTTTTGTTTAATGTCTTGGAAGAAAAGCAGGTGGTAACTACCTTAGAAGCACTCATCCAAGCTTTAATGGCTAGCAAATCCAT GTCTGAGCTCGAAGTTAGCAGGGAAAGGTTTAGTGGAATACTAGGCCCTAGGATTGCAGACTTGATCTCAACTGATTCTTTGAGTCTCATTGCAGTGACT ACAGAAGCCATCACAAATATATTCAGTACGAGTGATTACTGCAATTATTTTCCTTCCCTTGAGACTACTGGCGCAATCAATAAGCTGGCAACAACACTGC AGGAATGTGAGGAGGACCCCATAACTCAAATCCATGTATTAATCGTCCTTGCAAAGCTCGCGGAATTTGGAAGCCTTGAGACAGTTGATAAGGTGCTCGA GAGCATTCCCTTTAACCAGCTGGCTGATTTGCTCTCCCCTAGTGCTGAGATATTGCATGAGAGCATGTTTACAGTGTTGAACTCTTTGACCAAAGCTGGA AAGTCGAATGCTGTTGAGAGAATGTTCGCTTCTGGGATCGAGAAAAAACTTATTAAACTTCTTGAGAATGGATCTGAAGTTCTACAACACCATGCTATTG TCACACTGAAGGGATTTTACGAGGTTGCTTGCAATCCTGGAAGTGGTTCTCTTCATCCATCTAATCTAAATCTTCTGCCATGGCAAGTTAGGCTTCGTCT AGAAACTTTTGTTCTGTCAGATCAAACTGTTCCTCAGACGTCAAAGACACAATCTTTTGAAGATCTCATTTATAAGCTATCAGATGGGAATATAAAGCAG ATATTGCAGGCAATGCAAGATCTCATACCAATTATTGAGAAGGCAGTAGATTCTACAATCAGAGAAATGATTTTACAAAGTCCCCTAGTCAAAAGGCTAT CAGAACTTCTGCAAAGTAGGCACTCAGAACAGAACTCAGTGAGATCTGAATCTGCCTTCTTACTGATGAAGCTAGCTTTGGCTGGTGGAGAACCTTGCAT TACGAAATTTCTAGACCATGAAATTATTCCCGAGCTAGTTAAGATGATGCAATGCAATGTTGCGGAGCTGCAGGATTCAGGCTATACAGCACTGCACCAA ATGCTTTATGGAAATGGTGGGATCCTTGTATTGCATAAGATCTTTAAAACAGGTCTAGTGGATAGGATGGTTGAATCATTAGACAGAAAATCAATAAAGA CACGAGAAGTGAATGTTCATTGCATTTTGGATCTTGTTGAGCTAGGAAATAAATCCTGCTTAGAGAAAATGCTGTCATCACAGGTGGTGGAGAAGCTTGT AAGATTGGAAAAGGTCACCGGGGGATCTGGCGAAACAATTGTCGGATTTCTCGAAGGCATGGACAAATGCAAGGATCTGTCAATGATGGAGCGTAAGGTG ATAAAGCAACAAGTGGTTAGGAAGGTCAGGGCCTCCTTGAAAGGGCATAAATTTGATTCTCAAATATTAGCATCAGTAGATGCTTGTATGTCCGAGCGTT CAAAAGGTTCCAGTAGTAGCGGTTGTGGTAGATACAGAAAGTAA
AA sequence Show only first row Show all	>Potri.003G062100.1 pacid=42786663 polypeptide=Potri.003G062100.1.p locus=Potri.003G062100 ID=Potri.003G062100.1.v4.1 annot-version=v4.1 MEALQVISSATEIISSMVGVVSALDQASRNLDEAPKKIRMLEEFVYDLANLTRQIKQKHVYKLHNPQLDHQIQSLNVLIERMHPNIMKARRIVSRSRVKN LAKVVWSSMAGDPLSKLINTIRDDLNWWFESQRFAQHVQMVIESTAQDVPVRLKIKVELGWPISSKCHFVRNLLEQEVSHRVLLIVGLSGIGKSCLARQV ASNPPTKFVDGAVELGFGQWCSRNACNGNKDEYQRRLARKISKFLVQIGFWKKIRDEDNGDLEYVCCILQEALYGKSILILLDDVWEQDIVERFARLYDN DCKYLVTTRNEAVCEITEAEKVELSKDDTREISKAILQYHSLLSVEELPGVAETLLERCGHHPLTVAVMGKALRKEVRAEKWEKAITNLSTFATRAPGPV SYVNEKEAESTLTIFGSFEFSLEAMPRDSKRLFIALASLSWAAPVPEACLEAVWSVLGEEILFPLIVCKLVEGSLLIKTEMDPMYLVHDMVSLYLDSKAD DSTGILLNEYSPEETAIICPWLLIFGKENVKRIAEKRTEFLFNVLEEKQVVTTLEALIQALMASKSMSELEVSRERFSGILGPRIADLISTDSLSLIAVT TEAITNIFSTSDYCNYFPSLETTGAINKLATTLQECEEDPITQIHVLIVLAKLAEFGSLETVDKVLESIPFNQLADLLSPSAEILHESMFTVLNSLTKAG KSNAVERMFASGIEKKLIKLLENGSEVLQHHAIVTLKGFYEVACNPGSGSLHPSNLNLLPWQVRLRLETFVLSDQTVPQTSKTQSFEDLIYKLSDGNIKQ ILQAMQDLIPIIEKAVDSTIREMILQSPLVKRLSELLQSRHSEQNSVRSESAFLLMKLALAGGEPCITKFLDHEIIPELVKMMQCNVAELQDSGYTALHQ MLYGNGGILVLHKIFKTGLVDRMVESLDRKSIKTREVNVHCILDLVELGNKSCLEKMLSSQVVEKLVRLEKVTGGSGETIVGFLEGMDKCKDLSMMERKV IKQQVVRKVRASLKGHKFDSQILASVDACMSERSKGSSSSGCGRYRK

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DESeq2's median of ratios [POPLAR]

Mapped by: StringTie Salmon Order by: Tissue Experiment Show only core collection Show again Show schematic diagram

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Coexpressed genes

Compare expression of checked genes Schematic diagram [FLAX] Schematic diagram [POPLAR]

*If you select 4 or less genes and then press "compare expression", expression will be shown as a graph. If you select more than 4 genes, expresion will be shown as a heat map.
*Color represents relative expression level among samples for each gene.

At best	At TF class	At alias	At description		Locus	MR	r	Symbol	NWA:WT	NWB:WT	NWA:OE-ARK2	NWB:OE-ARK2	NWA:miRNA-ARK2	NWB:miRNA-ARK2	NW 0hr	WT H20	WT-NW	TUA1dEY NW	TUA1dEY+TUB15 NW	TUA1dY+TUB9 NW	Pde NW	NWA:WT GA	NWBWT GA	TW:WT	TW:WT GA	NWA:OE-ARK2 GA	NWB:OE-ARK2 GA	TW:OE-ARK2	TW:OE-ARK2 GA	NWA:miRNA-ARK2 GA	NWB:miRNA-ARK2 GA	TW:miRNA-ARK2	TW:miRNA-ARK2 GA	TW 2hr	TW 8hr	TW 24hr	TW 48hr	TW 96hr	TW 336hr	WT ACC	35S::etr1-1 H20	35S::etr1-1 ACC	LMX5::etr1-1 H20	LMX5::etr1-1 ACC	WT-TW	TUA1dEY TW	TUA1dEY+TUB15 TW	TUA1dY+TUB9 TW	Pde TW	OW:WT	OW:WT GA	OW:OE-ARK2	OW:OE-ARK2 GA	OW:miRNA-ARK2	OW:miRNA-ARK2 GA	OW 2hr	OW 8hr	OW 24hr	OW 48hr	OW 96hr	OW 336hr	Root CTR	Root LongCold	Root LongDrougt	Root LongHeat	Root LongSalt	Root ShortCold	Root ShortDrougt	Root ShortHeat	Root ShortSalt	Ptr root	Leaf CTR	Leaf LongCold	Leaf LongDrougt	Leaf LongHeat	Leaf LongSalt	Leaf ShortCold	Leaf ShortDrougt	Leaf ShortHeat	Leaf ShortSalt	Ptr leaf	Stem CTR	Stem LongCold	Stem LongDrougt	Stem LongHeat	Stem LongSalt	Stem ShortCold	Stem ShortDrougt	Stem ShortHeat	Stem ShortSalt	Ptr shoot	Ptr xylem	Ptr phloem	Ptr fiber	Ptr vessel	Ptr fiber vessel ray
AT1G15890			Disease resistance protein (CC...		Potri.003G062100 [exp]	0	1
AT4G14240			CBS domain-containing protein ...		Potri.008G202100 [exp]	2.82	0.9165
AT1G57790			F-box family protein (.1)		Potri.012G106800 [exp]	6.48	0.9192
AT2G35736			unknown protein		Potri.001G123000 [exp]	8.48	0.8934
					Potri.003G104800 [exp]	9.00	0.9173
AT5G03530		ATRABALPHA, AtR...	ARABIDOPSIS THALIANA RAB GTPAS...		Potri.016G097800 [exp]	11.22	0.9063	ALPHA.3
					Potri.004G071450 [exp]	11.95	0.9038
AT5G04700			Ankyrin repeat family protein ...		Potri.008G023101 [exp]	12.48	0.9133
AT5G17620			unknown protein		Potri.013G072300 [exp]	14.96	0.9111
AT1G62930		RPF3	RNA processing factor 3, Tetra...		Potri.004G074500 [exp]	16.52	0.9117
AT5G40645			RPM1-interacting protein 4 (RI...		Potri.001G338500 [exp]	17.66	0.9015

Compare expression of checked genes

Potri.003G062100 coexpression network

*The number of genes in the network is adjusted within 50 genes.
*Gene name represents symbol(s) of closest Arabidopsis gene if symbol(s) for the gene itself doesn't exist.
*Circle diameter represents the number of connection with other genes within this network.
*Color for gene name represents subnetwork based on the result of network clustering.