Plant FIBer expression Database

External link	JGI Phytozome v13 [genome browser] Popgenie AspWood
Symbol
Arabidopsis homologues Show only best Show top 10	Locus ID BLAST score/e-value TF class Alias TAIR10 short description AT1G72650 333 / 1e-105 MYB TRFL6 TRF-like 6 (.1.2) AT1G17460 191 / 2e-52 MYB TRFL3 TRF-like 3 (.1.2) AT2G37025 95 / 2e-20 TRFL8 TRF-like 8 (.1.2) AT3G53790 65 / 4e-11 MYB TRFL4 TRF-like 4 (.1) AT3G12560 62 / 7e-10 ATTBP2, TRFL9 TELOMERIC DNA-BINDING PROTEIN 2, TRF-like 9 (.1) AT5G13820 62 / 9e-10 HPPBF-1, ATTBP1, ATBP-1, ATBP1, TBP1 H-PROTEIN PROMOTE, telomeric DNA binding protein 1 (.1) AT1G07540 62 / 1e-09 MYB TRFL2 TRF-like 2 (.1) AT3G46590 60 / 4e-09 ATTRP2, TRFL1 TRF-like 1 (.1.2.3) AT5G59430 58 / 2e-08 ATTRP1 TELOMERE REPEAT BINDING PROTEIN 1, telomeric repeat binding protein 1 (.1.2.3.4) AT5G58340 55 / 1e-07 MYB myb-like HTH transcriptional regulator family protein (.1.2)
Paralogs Show only best Show top 10	Gene ID BLAST score/e-value At best hit BLAST score/e-value TAIR10 short description Potri.001G170200 [exp] 890 / 0 AT1G72650 399 / 5e-131 TRF-like 6 (.1.2) Potri.006G126300 [exp] 100 / 8e-22 AT2G37025 120 / 2e-29 TRF-like 8 (.1.2) Potri.006G086500 [exp] 64 / 1e-10 AT1G07540 370 / 2e-119 TRF-like 2 (.1) Potri.010G202400 [exp] 63 / 4e-10 AT3G12560 461 / 1e-154 TELOMERIC DNA-BINDING PROTEIN 2, TRF-like 9 (.1) Potri.001G241600 [exp] 62 / 9e-10 AT1G07540 375 / 6e-121 TRF-like 2 (.1) Potri.008G057300 [exp] 62 / 9e-10 AT5G13820 427 / 8e-141 H-PROTEIN PROMOTE, telomeric DNA binding protein 1 (.1) Potri.009G032000 [exp] 60 / 3e-09 AT1G07540 485 / 7e-164 TRF-like 2 (.1) Potri.006G147400 [exp] 50 / 1e-06 AT1G17520 209 / 2e-66 Homeodomain-like/winged-helix DNA-binding family protein (.1) Potri.013G154500 [exp] 52 / 2e-06 AT5G58340 88 / 4e-18 myb-like HTH transcriptional regulator family protein (.1.2)
Flax homologues Show only best Show top 10	Locus ID BLAST score/e-value At best hit BLAST score/e-value TAIR10 short description Lus10037678 [exp] 362 / 3e-117 AT1G72650 341 / 2e-109 TRF-like 6 (.1.2) Lus10015664 [exp] 348 / 2e-111 AT1G72650 335 / 9e-107 TRF-like 6 (.1.2) Lus10013809 [exp] 82 / 3e-18 AT2G37025 97 / 3e-24 TRF-like 8 (.1.2) Lus10026522 [exp] 85 / 4e-17 AT2G37025 97 / 2e-21 TRF-like 8 (.1.2) Lus10000947 [exp] 63 / 5e-10 AT5G13820 455 / 5e-152 H-PROTEIN PROMOTE, telomeric DNA binding protein 1 (.1) Lus10002704 [exp] 63 / 5e-10 AT5G13820 471 / 4e-158 H-PROTEIN PROMOTE, telomeric DNA binding protein 1 (.1) Lus10024385 [exp] 62 / 1e-09 AT1G07540 310 / 7e-97 TRF-like 2 (.1) Lus10010844 [exp] 62 / 1e-09 AT1G07540 308 / 7e-97 TRF-like 2 (.1) Lus10040285 [exp] 62 / 1e-09 AT5G13820 456 / 1e-152 H-PROTEIN PROMOTE, telomeric DNA binding protein 1 (.1) Lus10020771 [exp] 56 / 1e-07 AT5G58340 70 / 1e-12 myb-like HTH transcriptional regulator family protein (.1.2)
PFAM info	Clan ID Clan name Pfam ID Pfam name Pfam description CL0123 [poplar] [flax] HTH PF00249 [poplar] [flax] Myb_DNA-binding Myb-like DNA-binding domain
Representative CDS sequence Show only first row Show all	>Potri.003G063700.2 pacid=42786429 polypeptide=Potri.003G063700.2.p locus=Potri.003G063700 ID=Potri.003G063700.2.v4.1 annot-version=v4.1 ATGGAAACAGTGGTTGAAGTTGAGGGGAATGATGAAGCTAAGCTCAAGGAGTGTGGGATTCGTAACAGTACTTCTTCCTTGTCTTCGCCCAAGCAGATTT CCGACCCAGTTGTATACAAGCTTGTTCGGCTGGAAGGAGATGGGAGAATAGTACCTGCAACAGATGATGAATTAATGGAGGTAGAGAGTCTGCTTATAGA TGACAAATGTGAAATGCATATCTATGCAGACCCTGGGCAGACTGTAGGGTGCATTTCCAATGAAGGATCTTCCTCTGGGATAGCCCAATTAGAAAGCCTG GAAGGTTTGTTGCAATCTAGGAACAAAGAAGCTGATCCAGATAAATTGAATGCAAGGCTTGAGGAAACTGTCCCTTCTCTGGCACCAAGTTTGAGTGAAA GCCATTTTAATCAATCTGGGAGTTTTGGGGAGTGCTCTCATTCTTCAGATAAACTGGTAGCTGGTGGGTCAACTTTGTCTGTTGTTACTACAAAACCTGA TTTTTCCAAGTTGAAGGGGGAAATATGCCTGGACAATCTATCAATAAAAGAACTCCATGAAACTTTTAAAGCAACATTTGGCCGAGAAACTACTGTCAAG GATAAGCAATGGCTTAAGAGAAGGATTTCCATGGGATTGACAAATTCTTGTGATGTTTCAGTGACTTCTTTTATAATTAAAGATAACAAATTGGTTAAGA AAGGGAATGGAGAAATCTCTAACTGTATGGATGGTTCCTATGCTGAGGACCCACCAATTGGCAATCAGAAAGACTTACCAACTAGCCTTGTTAGCCAATT GGATTATCATCAAGTTGTACCTGAAAAAAGACTGGAAAATCCCAACTTAGATGACAATTCTGGAAGTGATGATCATCAAACAGAACAGAGAGCTGCTAAA AGAGCTCGGAAGCCCACAAAGCGATATATCGAAGAACTTTCAGAAGTGGAGTCCAAAGAGTCTAATGGAAGGTTAATGAATTTGGCTAAAAATTCTGGAC ATGGACTGATATCCCTAAAATCTCATGTTAGGCTGGTTAGAAATGTCCCTTTAGGTGGGAGAACTGTTGTTACAAGGCTGGATTCTCTTGGAGGATATGG GATTCAGGTTCCATGTGTTTCTCGGGTTCGAAGAAGCCGTCCAAGGAAAAATTTCATGGCTCTTTTGAAATTCAATCCAAGTGGCATGGGCATGGAAGCT ACGGTAAAGAAAGCCCTTGGTGATCATAGTTTTCCACCAGATGATGGGAAGGAGAGCAGAGTCTTGAAAGCCAGCTCTACCCCTGAACATGTTCATCATC AGAAATTCAATCCAAGTGGCATGGGCATGGAAGCTACGTTGGTAAAGAAAGCCCTTGGTGATCATAGTTTTCCACTAGATGATGGGAAGGAAAGCAGAGT CTTGAAAGCCAGCTCTACCCCTGAACATGTTCATCATCAGTTTATAGGTGTGCCAGAGAAAGATAAGCAGTTCTCAGTGATGAGTGCGATTGGCTTGGGA CATAACACAGAGCTGAAATGCATTAATTCATCTAGGGATTCAGATGACAATGTAGTTACTGTTCCTACACCTAAAGGTGGAATTAGAAGGAAACATCATC GAGCTTGGACTCTCTCTGAGGTGATGAAGCTGGTTGAGGGTGTCTCTAGGTATGGAGCTGGAAGGTGGTCTGAGATCAAACGACTTGCATTTGCATCCTA TTCATACCGCACCTCTGTTGATCTCAAGGACAAGTGGAGGAATCTGCTGAAAGCCAGCTTGGCGCCTCAAGATAACGGAATGAATTCCCGGAAAAGTACT GGTGCAATGCCCATTCCTGCTCCAATTTTGTTAAAAGTGAGAGAGCTCGCGGAGATGCAAGCACAGGTTCTGCCAAATCTTAGCTCGACCAAGATTGCTG GGAGCACTAGAAAAAATGTACATGAAAAACAAACGGGGTTCTTGTAG
AA sequence Show only first row Show all	>Potri.003G063700.2 pacid=42786429 polypeptide=Potri.003G063700.2.p locus=Potri.003G063700 ID=Potri.003G063700.2.v4.1 annot-version=v4.1 METVVEVEGNDEAKLKECGIRNSTSSLSSPKQISDPVVYKLVRLEGDGRIVPATDDELMEVESLLIDDKCEMHIYADPGQTVGCISNEGSSSGIAQLESL EGLLQSRNKEADPDKLNARLEETVPSLAPSLSESHFNQSGSFGECSHSSDKLVAGGSTLSVVTTKPDFSKLKGEICLDNLSIKELHETFKATFGRETTVK DKQWLKRRISMGLTNSCDVSVTSFIIKDNKLVKKGNGEISNCMDGSYAEDPPIGNQKDLPTSLVSQLDYHQVVPEKRLENPNLDDNSGSDDHQTEQRAAK RARKPTKRYIEELSEVESKESNGRLMNLAKNSGHGLISLKSHVRLVRNVPLGGRTVVTRLDSLGGYGIQVPCVSRVRRSRPRKNFMALLKFNPSGMGMEA TVKKALGDHSFPPDDGKESRVLKASSTPEHVHHQKFNPSGMGMEATLVKKALGDHSFPLDDGKESRVLKASSTPEHVHHQFIGVPEKDKQFSVMSAIGLG HNTELKCINSSRDSDDNVVTVPTPKGGIRRKHHRAWTLSEVMKLVEGVSRYGAGRWSEIKRLAFASYSYRTSVDLKDKWRNLLKASLAPQDNGMNSRKST GAMPIPAPILLKVRELAEMQAQVLPNLSSTKIAGSTRKNVHEKQTGFL

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DESeq2's median of ratios [POPLAR]

Mapped by: StringTie Salmon Order by: Tissue Experiment Show only core collection Show again Show schematic diagram

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Coexpressed genes

Compare expression of checked genes Schematic diagram [FLAX] Schematic diagram [POPLAR]

*If you select 4 or less genes and then press "compare expression", expression will be shown as a graph. If you select more than 4 genes, expresion will be shown as a heat map.
*Color represents relative expression level among samples for each gene.

At best	At TF class	At alias	At description		Locus	MR	r	Symbol	NWA:WT	NWB:WT	NWA:OE-ARK2	NWB:OE-ARK2	NWA:miRNA-ARK2	NWB:miRNA-ARK2	NW 0hr	WT H20	WT-NW	TUA1dEY NW	TUA1dEY+TUB15 NW	TUA1dY+TUB9 NW	Pde NW	NWA:WT GA	NWBWT GA	TW:WT	TW:WT GA	NWA:OE-ARK2 GA	NWB:OE-ARK2 GA	TW:OE-ARK2	TW:OE-ARK2 GA	NWA:miRNA-ARK2 GA	NWB:miRNA-ARK2 GA	TW:miRNA-ARK2	TW:miRNA-ARK2 GA	TW 2hr	TW 8hr	TW 24hr	TW 48hr	TW 96hr	TW 336hr	WT ACC	35S::etr1-1 H20	35S::etr1-1 ACC	LMX5::etr1-1 H20	LMX5::etr1-1 ACC	WT-TW	TUA1dEY TW	TUA1dEY+TUB15 TW	TUA1dY+TUB9 TW	Pde TW	OW:WT	OW:WT GA	OW:OE-ARK2	OW:OE-ARK2 GA	OW:miRNA-ARK2	OW:miRNA-ARK2 GA	OW 2hr	OW 8hr	OW 24hr	OW 48hr	OW 96hr	OW 336hr	Root CTR	Root LongCold	Root LongDrougt	Root LongHeat	Root LongSalt	Root ShortCold	Root ShortDrougt	Root ShortHeat	Root ShortSalt	Ptr root	Leaf CTR	Leaf LongCold	Leaf LongDrougt	Leaf LongHeat	Leaf LongSalt	Leaf ShortCold	Leaf ShortDrougt	Leaf ShortHeat	Leaf ShortSalt	Ptr leaf	Stem CTR	Stem LongCold	Stem LongDrougt	Stem LongHeat	Stem LongSalt	Stem ShortCold	Stem ShortDrougt	Stem ShortHeat	Stem ShortSalt	Ptr shoot	Ptr xylem	Ptr phloem	Ptr fiber	Ptr vessel	Ptr fiber vessel ray
AT1G72650	MYB	TRFL6	TRF-like 6 (.1.2)		Potri.003G063700 [exp]	0	1
AT1G27840		ATCSA-1	Transducin/WD40 repeat-like su...		Potri.014G016100 [exp]	1.41	0.8872
AT3G48195			Phox (PX) domain-containing pr...		Potri.012G082500 [exp]	2.23	0.8460
AT1G72650	MYB	TRFL6	TRF-like 6 (.1.2)		Potri.001G170200 [exp]	2.82	0.8651
AT4G38180	FAR1_related	FRS5	FAR1-related sequence 5 (.1)		Potri.009G170100 [exp]	5.47	0.8600
AT5G54080		HGO	"homogentisate 1,2-dioxygenase...		Potri.001G374100 [exp]	6.00	0.8232
AT3G06620			PAS domain-containing protein ...		Potri.010G146000 [exp]	8.24	0.8154
AT3G17830			Molecular chaperone Hsp40/DnaJ...		Potri.015G035300 [exp]	8.94	0.8493
AT5G50410			unknown protein		Potri.012G097500 [exp]	10.19	0.8324
AT1G73970			unknown protein		Potri.008G016000 [exp]	10.81	0.8322
AT2G31290			Ubiquitin carboxyl-terminal hy...		Potri.005G191100 [exp]	14.14	0.8080

Compare expression of checked genes

Potri.003G063700 coexpression network

*The number of genes in the network is adjusted within 50 genes.
*Gene name represents symbol(s) of closest Arabidopsis gene if symbol(s) for the gene itself doesn't exist.
*Circle diameter represents the number of connection with other genes within this network.
*Color for gene name represents subnetwork based on the result of network clustering.