Plant FIBer expression Database

External link	JGI Phytozome v13 [genome browser] Popgenie AspWood
Symbol
Arabidopsis homologues Show only best Show top 10	Locus ID BLAST score/e-value TF class Alias TAIR10 short description AT3G13840 430 / 5e-146 GRAS GRAS family transcription factor (.1) AT3G49950 150 / 8e-40 GRAS GRAS family transcription factor (.1) AT4G37650 144 / 6e-37 GRAS SGR7, SHR SHORT ROOT, SHOOT GRAVITROPISM 7, GRAS family transcription factor (.1) AT3G03450 120 / 1e-28 GRAS RGL2 RGA-like 2 (.1) AT4G17230 110 / 1e-25 GRAS SCL13 SCARECROW-like 13 (.1) AT5G17490 108 / 8e-25 GRAS AtRGL3, RGL3 RGA-like protein 3 (.1) AT1G14920 104 / 1e-23 GRAS RGA2, GAI RESTORATION ON GROWTH ON AMMONIA 2, GIBBERELLIC ACID INSENSITIVE, GRAS family transcription factor family protein (.1) AT5G48150 99 / 6e-22 GRAS PAT1 phytochrome a signal transduction 1, GRAS family transcription factor (.1.2) AT1G66350 96 / 7e-21 GRAS RGL1 RGA-like 1 (.1) AT2G01570 91 / 4e-19 GRAS RGA1 REPRESSOR OF GA1-3 1, REPRESSOR OF GA, GRAS family transcription factor family protein (.1)
Paralogs Show only best Show top 10	Gene ID BLAST score/e-value At best hit BLAST score/e-value TAIR10 short description Potri.001G168800 [exp] 774 / 0 AT3G13840 481 / 6e-166 GRAS family transcription factor (.1) Potri.017G019900 [exp] 146 / 3e-38 AT4G37650 405 / 1e-137 SHORT ROOT, SHOOT GRAVITROPISM 7, GRAS family transcription factor (.1) Potri.007G063300 [exp] 146 / 9e-38 AT4G37650 576 / 0.0 SHORT ROOT, SHOOT GRAVITROPISM 7, GRAS family transcription factor (.1) Potri.007G132000 [exp] 140 / 2e-36 AT4G37650 410 / 4e-140 SHORT ROOT, SHOOT GRAVITROPISM 7, GRAS family transcription factor (.1) Potri.005G145600 [exp] 128 / 7e-32 AT3G49950 521 / 0.0 GRAS family transcription factor (.1) Potri.017G041500 [exp] 126 / 3e-31 AT3G49950 370 / 2e-125 GRAS family transcription factor (.1) Potri.007G053500 [exp] 124 / 2e-30 AT3G49950 524 / 0.0 GRAS family transcription factor (.1) Potri.007G119000 [exp] 117 / 4e-28 AT3G49950 369 / 7e-125 GRAS family transcription factor (.1) Potri.005G186500 [exp] 110 / 3e-25 AT1G21450 685 / 0.0 SCARECROW-like 1 (.1)
Flax homologues Show only best Show top 10	Locus ID BLAST score/e-value At best hit BLAST score/e-value TAIR10 short description Lus10022097 [exp] 342 / 1e-115 AT3G13840 264 / 5e-86 GRAS family transcription factor (.1) Lus10000532 [exp] 296 / 8e-98 AT3G13840 235 / 3e-75 GRAS family transcription factor (.1) Lus10014852 [exp] 145 / 7e-38 AT3G49950 504 / 3e-178 GRAS family transcription factor (.1) Lus10011076 [exp] 130 / 2e-32 AT3G49950 502 / 2e-177 GRAS family transcription factor (.1) Lus10019281 [exp] 130 / 5e-32 AT4G37650 509 / 2e-177 SHORT ROOT, SHOOT GRAVITROPISM 7, GRAS family transcription factor (.1) Lus10025200 [exp] 127 / 1e-31 AT4G37650 484 / 8e-169 SHORT ROOT, SHOOT GRAVITROPISM 7, GRAS family transcription factor (.1) Lus10012089 [exp] 124 / 3e-30 AT4G37650 483 / 2e-167 SHORT ROOT, SHOOT GRAVITROPISM 7, GRAS family transcription factor (.1) Lus10011542 [exp] 123 / 1e-29 AT4G37650 499 / 3e-172 SHORT ROOT, SHOOT GRAVITROPISM 7, GRAS family transcription factor (.1) Lus10019361 [exp] 119 / 1e-28 AT4G37650 403 / 5e-136 SHORT ROOT, SHOOT GRAVITROPISM 7, GRAS family transcription factor (.1) Lus10039709 [exp] 119 / 2e-28 AT3G49950 350 / 3e-117 GRAS family transcription factor (.1)
PFAM info	Clan ID Clan name Pfam ID Pfam name Pfam description CL0063 [poplar] [flax] NADP_Rossmann PF03514 [poplar] [flax] GRAS GRAS domain family
Representative CDS sequence Show only first row Show all	>Potri.003G065400.1 pacid=42785843 polypeptide=Potri.003G065400.1.p locus=Potri.003G065400 ID=Potri.003G065400.1.v4.1 annot-version=v4.1 ATGACCATTGAAGGATCAGAGCCAAACCAGGCATCAGATCACATATTGGATTGGCTAGAGGATTCAGTATCATTCCTACCATCTTTCTTGGATGATCCGT ACAACGCAGCCGATATCGATCCCTATCAATGGTGGGAGCAAGCAGAAGAGATTTGCCAGGATCTAGCCAACACCAACACCAACACCAACACCAGTCTCAG CAGCAGCACGACCACAAGCACCATCACAAATATCAATACAACTAGCCTAATATCACCGAATAATCCCACCATATCTAATCATCCACCAACGTCCACTTCA AAGAAGCGGAAAGATCCTGAAGACCTAGTTCCCAAAACATCCCAGAATCATAATCAGAGAAGGAATCTGAATCATCGGATAAACAAGGAAGACCAAGATG GTGAAGCAGTAGTTGGAGAAGTGGTGGCAGTGAAAAAATCAAATGGAAACAAGAAGAGCACCAACAAGAGCACAGGTAATAACTCAAATAACGGTAACAA GAAGGAAGGAAGATGGGCAGAACAGTTACTTAACCCCTGTGCAGCTGCTATTACTATTGGAAACTTGTCACGCGTGCAACACCTTCTCTATGTACTCCAT GAGCTAGCCTCCCCAACTGGCGATGCTAACCACCGGCTAGCAGCTTATGGTCTTCGAGCGCTCACACATCACCTATCATCCTCGTCAACTGTGTCCTCGG CATCCATAGGAACCGTTACTTTCGCTTCTACTGAGCCAAAGTTCTTTCAAAAAGCTTTACTCAAATTCTACGAGGTTAGTCCTTGGTTTGCCTTCCCTAA TAACATTGCAAATGCCTCTATCCTTCAAGTTCTTGGACAAGAACAAGATCCCACGCGAATCCTTCATATTCTTGATATTGGGGTCTCCCATGGTGTGCAG TGGCCTACACTTCTTGAGGCCTTGACTCGCCGGCCTGGAGGACCTCCTCCTCTAGTACGCATCACAGTCATCACTGCCACCACTGAAAATGATCAAAGCA CTGAGCCCCCCTTTTCAATAGGTCCGCCAGGAGACAATTTTCCCTCAAGACTACTTGGTTTTGCCAAGTTCATGAACATCAATTTGGAAATCAAGAGACT TGATGGCTACCCATTACAAAAACTTAGTGGAAGAATAATAGACGCCAAACCTGAAGAAGCCTTAATAGTTTGTGCGCAATTCAGACTCCATCATTTAAAC CACAACACACCAGATGAAAGAACTGAGTTCTTTAGAGTTTTGAGAAGGTTGGAGCCAAAAGGCGTGATACTCAGCGAAAACAATATGGATTGTAGCTGCA ACAGTTGTGGGGATTTTGCAACAGGATTCTCACGGAGAGTACAGTATTTATGGAGGTTTTTGGACTCAACAAGCTCAGCTTTCAAAGGGCGAGAGAGTGA AGAAAGACGGATGATGGAAGGAGAGGGTTCAAAGGCCTTAACAAATCGTGGAGAAATGAATGAAGGGATAGATAAATGGTGCGAGAGGATGAAAGGGGTG GGATTTGTAGGCGAGATGTTTGGAGAAGATGCCATTGACGGAGCTCGTGCACTGTTGAGGAAGTATGATGGTAACTGGGAGATGAGAACGGGAGGGAAAG ATGGGTGCGTGGGGCTATGGTGGAAAGGGCAACCTGTTTCTTTTTGTTCATTATGGAAATTGGATATGAAAGGAAGTGACAGTTAA
AA sequence Show only first row Show all	>Potri.003G065400.1 pacid=42785843 polypeptide=Potri.003G065400.1.p locus=Potri.003G065400 ID=Potri.003G065400.1.v4.1 annot-version=v4.1 MTIEGSEPNQASDHILDWLEDSVSFLPSFLDDPYNAADIDPYQWWEQAEEICQDLANTNTNTNTSLSSSTTTSTITNINTTSLISPNNPTISNHPPTSTS KKRKDPEDLVPKTSQNHNQRRNLNHRINKEDQDGEAVVGEVVAVKKSNGNKKSTNKSTGNNSNNGNKKEGRWAEQLLNPCAAAITIGNLSRVQHLLYVLH ELASPTGDANHRLAAYGLRALTHHLSSSSTVSSASIGTVTFASTEPKFFQKALLKFYEVSPWFAFPNNIANASILQVLGQEQDPTRILHILDIGVSHGVQ WPTLLEALTRRPGGPPPLVRITVITATTENDQSTEPPFSIGPPGDNFPSRLLGFAKFMNINLEIKRLDGYPLQKLSGRIIDAKPEEALIVCAQFRLHHLN HNTPDERTEFFRVLRRLEPKGVILSENNMDCSCNSCGDFATGFSRRVQYLWRFLDSTSSAFKGRESEERRMMEGEGSKALTNRGEMNEGIDKWCERMKGV GFVGEMFGEDAIDGARALLRKYDGNWEMRTGGKDGCVGLWWKGQPVSFCSLWKLDMKGSDS

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DESeq2's median of ratios [POPLAR]

Mapped by: StringTie Salmon Order by: Tissue Experiment Show only core collection Show again Show schematic diagram

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Coexpressed genes

Compare expression of checked genes Schematic diagram [FLAX] Schematic diagram [POPLAR]

*If you select 4 or less genes and then press "compare expression", expression will be shown as a graph. If you select more than 4 genes, expresion will be shown as a heat map.
*Color represents relative expression level among samples for each gene.

At best	At TF class	At alias	At description		Locus	MR	r	Symbol	NWA:WT	NWB:WT	NWA:OE-ARK2	NWB:OE-ARK2	NWA:miRNA-ARK2	NWB:miRNA-ARK2	NW 0hr	WT H20	WT-NW	TUA1dEY NW	TUA1dEY+TUB15 NW	TUA1dY+TUB9 NW	Pde NW	NWA:WT GA	NWBWT GA	TW:WT	TW:WT GA	NWA:OE-ARK2 GA	NWB:OE-ARK2 GA	TW:OE-ARK2	TW:OE-ARK2 GA	NWA:miRNA-ARK2 GA	NWB:miRNA-ARK2 GA	TW:miRNA-ARK2	TW:miRNA-ARK2 GA	TW 2hr	TW 8hr	TW 24hr	TW 48hr	TW 96hr	TW 336hr	WT ACC	35S::etr1-1 H20	35S::etr1-1 ACC	LMX5::etr1-1 H20	LMX5::etr1-1 ACC	WT-TW	TUA1dEY TW	TUA1dEY+TUB15 TW	TUA1dY+TUB9 TW	Pde TW	OW:WT	OW:WT GA	OW:OE-ARK2	OW:OE-ARK2 GA	OW:miRNA-ARK2	OW:miRNA-ARK2 GA	OW 2hr	OW 8hr	OW 24hr	OW 48hr	OW 96hr	OW 336hr	Root CTR	Root LongCold	Root LongDrougt	Root LongHeat	Root LongSalt	Root ShortCold	Root ShortDrougt	Root ShortHeat	Root ShortSalt	Ptr root	Leaf CTR	Leaf LongCold	Leaf LongDrougt	Leaf LongHeat	Leaf LongSalt	Leaf ShortCold	Leaf ShortDrougt	Leaf ShortHeat	Leaf ShortSalt	Ptr leaf	Stem CTR	Stem LongCold	Stem LongDrougt	Stem LongHeat	Stem LongSalt	Stem ShortCold	Stem ShortDrougt	Stem ShortHeat	Stem ShortSalt	Ptr shoot	Ptr xylem	Ptr phloem	Ptr fiber	Ptr vessel	Ptr fiber vessel ray
AT3G13840	GRAS		GRAS family transcription fact...		Potri.003G065400 [exp]	0	1
AT1G07630		PLL5	pol-like 5 (.1)		Potri.006G085000 [exp]	2.00	0.8825
AT5G06510	CCAAT	NF-YA10	"nuclear factor Y, subunit A10...		Potri.006G201900 [exp]	2.44	0.8886
AT4G20260		ATPCAP1	ARABIDOPSIS THALIANA PLASMA-ME...		Potri.003G157100 [exp]	9.79	0.8377
AT4G23980	ARF	ARF9	auxin response factor 9 (.1.2)		Potri.001G088600 [exp]	10.95	0.8593
AT2G46495			RING/U-box superfamily protein...		Potri.002G170300 [exp]	12.64	0.8945
AT4G10380		AtNIP5;1, NIP5;...	NOD26-LIKE MIP 8, NOD26-LIKE M...		Potri.011G146900 [exp]	15.29	0.8609
AT5G15630		IRX6, COBL4	IRREGULAR XYLEM 6, COBRA-LIKE4...		Potri.015G060200 [exp]	18.33	0.8638
AT4G23980	ARF	ARF9	auxin response factor 9 (.1.2)		Potri.003G142100 [exp]	21.54	0.7989
AT1G31050	bHLH	bHLH111	basic helix-loop-helix (bHLH) ...		Potri.008G142700 [exp]	25.69	0.8015
AT1G49570			Peroxidase superfamily protein...		Potri.009G106400 [exp]	30.16	0.8676

Compare expression of checked genes

Potri.003G065400 coexpression network

*The number of genes in the network is adjusted within 50 genes.
*Gene name represents symbol(s) of closest Arabidopsis gene if symbol(s) for the gene itself doesn't exist.
*Circle diameter represents the number of connection with other genes within this network.
*Color for gene name represents subnetwork based on the result of network clustering.