Plant FIBer expression Database

External link	JGI Phytozome v13 [genome browser] Popgenie AspWood
Symbol	ERF39,ERF1.4
Arabidopsis homologues Show only best Show top 10	Locus ID BLAST score/e-value TF class Alias TAIR10 short description AT1G53910 224 / 5e-70 AP2_ERF RAP2.12 related to AP2 12 (.1.2.3) AT3G14230 203 / 7e-62 AP2_ERF RAP2.2 related to AP2 2 (.1.2.3) AT1G72360 140 / 7e-39 AP2_ERF AtERF73, HRE1 HYPOXIA RESPONSIVE ERF \(ETHYLENE RESPONSE FACTOR\) 1, ethylene response factor 73, Integrase-type DNA-binding superfamily protein (.1.2.3) AT2G47520 123 / 1e-33 AP2_ERF AtERF71, ERF71, HRE2 HYPOXIA RESPONSIVE ERF \(ETHYLENE RESPONSE FACTOR\) 2, Arabidopsis thaliana ethylene response factor 71, Integrase-type DNA-binding superfamily protein (.1) AT3G16770 121 / 3e-32 AP2_ERF RAP2.03, ATEBP, RAP2.3 ,ERF72 RELATED TO AP2 3, ETHYLENE RESPONSE FACTOR 72, ethylene-responsive element binding protein (.1) AT2G33710 102 / 3e-25 AP2_ERF Integrase-type DNA-binding superfamily protein (.1.2) AT5G13330 101 / 6e-25 AP2_ERF RAP2.6L related to AP2 6l (.1) AT5G61890 101 / 1e-24 AP2_ERF Integrase-type DNA-binding superfamily protein (.1) AT5G44210 99 / 4e-24 AP2_ERF AtERF9, ATERF-9 ERF DOMAIN PROTEIN- 9, erf domain protein 9 (.1) AT3G15210 97 / 2e-23 AP2_ERF ATERF4, RAP2.5, ATERF-4 RELATED TO AP2 5, ethylene responsive element binding factor 4 (.1)
Paralogs Show only best Show top 10	Gene ID BLAST score/e-value At best hit BLAST score/e-value TAIR10 short description Potri.001G163700 [exp] 558 / 0 AT1G53910 223 / 9e-70 related to AP2 12 (.1.2.3) Potri.002G201600 [exp] 135 / 1e-36 AT3G16770 123 / 2e-33 RELATED TO AP2 3, ETHYLENE RESPONSE FACTOR 72, ethylene-responsive element binding protein (.1) Potri.014G126100 [exp] 134 / 2e-36 AT3G16770 122 / 3e-33 RELATED TO AP2 3, ETHYLENE RESPONSE FACTOR 72, ethylene-responsive element binding protein (.1) Potri.010G006800 [exp] 123 / 1e-32 AT3G16770 130 / 5e-37 RELATED TO AP2 3, ETHYLENE RESPONSE FACTOR 72, ethylene-responsive element binding protein (.1) Potri.008G210900 [exp] 116 / 5e-30 AT3G16770 146 / 5e-43 RELATED TO AP2 3, ETHYLENE RESPONSE FACTOR 72, ethylene-responsive element binding protein (.1) Potri.001G067600 [exp] 102 / 4e-25 AT5G13330 130 / 1e-37 related to AP2 6l (.1) Potri.009G101900 [exp] 102 / 5e-25 AT4G34410 119 / 2e-32 redox responsive transcription factor 1 (.1) Potri.003G162500 [exp] 101 / 6e-25 AT5G13330 142 / 5e-42 related to AP2 6l (.1) Potri.004G047600 [exp] 99 / 5e-24 AT5G44210 99 / 2e-25 ERF DOMAIN PROTEIN- 9, erf domain protein 9 (.1)
Flax homologues Show only best Show top 10	Locus ID BLAST score/e-value At best hit BLAST score/e-value TAIR10 short description Lus10013186 [exp] 287 / 2e-94 AT1G53910 254 / 7e-82 related to AP2 12 (.1.2.3) Lus10037448 [exp] 287 / 2e-94 AT1G53910 244 / 4e-78 related to AP2 12 (.1.2.3) Lus10003601 [exp] 128 / 3e-34 AT1G72360 144 / 2e-41 HYPOXIA RESPONSIVE ERF \(ETHYLENE RESPONSE FACTOR\) 1, ethylene response factor 73, Integrase-type DNA-binding superfamily protein (.1.2.3) Lus10016827 [exp] 117 / 3e-30 AT3G16770 183 / 4e-57 RELATED TO AP2 3, ETHYLENE RESPONSE FACTOR 72, ethylene-responsive element binding protein (.1) Lus10037487 [exp] 107 / 4e-27 AT3G16770 156 / 2e-47 RELATED TO AP2 3, ETHYLENE RESPONSE FACTOR 72, ethylene-responsive element binding protein (.1) Lus10014054 [exp] 103 / 3e-25 AT4G34410 139 / 4e-40 redox responsive transcription factor 1 (.1) Lus10033664 [exp] 96 / 5e-23 AT3G15210 119 / 2e-33 RELATED TO AP2 5, ethylene responsive element binding factor 4 (.1) Lus10039857 [exp] 94 / 3e-22 AT5G44210 138 / 8e-41 ERF DOMAIN PROTEIN- 9, erf domain protein 9 (.1) Lus10042996 [exp] 93 / 2e-21 AT5G51190 189 / 6e-60 Integrase-type DNA-binding superfamily protein (.1) Lus10016225 [exp] 91 / 3e-21 AT2G44840 154 / 4e-47 ethylene-responsive element binding factor 13 (.1)
PFAM info	Clan ID Clan name Pfam ID Pfam name Pfam description CL0081 [poplar] [flax] MBD-like PF00847 [poplar] [flax] AP2 AP2 domain
Representative CDS sequence Show only first row Show all	>Potri.003G071700.6 pacid=42785604 polypeptide=Potri.003G071650.1.p locus=Potri.003G071700 ID=Potri.003G071700.6.v4.1 annot-version=v4.1 ATGTGTGGCGGTGCTATCATCTCAGACTTCATCGCTCCGACAACCACCGCTCGATCTTCTCGGCGGTTGACCTCGGGCTTTGAGTGGCTTGAGCTGAAGA AACCCTTCAACAACAAGCACTTGAAGCCAGTTGTTGCTGATCCCGAAGATGATTTTGAGGCTGATTTTCAAGAGTTTAAGGATGAGTCTGATGTCGACGA GGATTATGATGTCTTTGCTGATGCCAAGCCATTTGCTTTCTCTGCTAGTGTTTCTGAACCTGCTCAAAAACGTGGGCTCCCTCGTGGTTCTACTGCTGTT AAATCTGCTGGATTCAGTGGACCTGCTGAAAAATCAGCCAAGAGGAAGAGAAAGAACCAGTTTAGAGGAATTAGGCAGCGTCCATGGGGAAAATGGGCTG CTGAGATTCGTGATCCCAGGAAAGGGGTACGTGTCTGGTTGGGAACATTCAATACTGCAGAAGAAGCTGCTAGAGCATATGATTCTGAGGCACGTAGAAT TCGTGGCAAGAAAGCTAAGGTGAACTTCCCTGATGAAGCTCCATGTGCTTCAGCAAGGCATCCAATTAAGGAAAACTCACAGAAACGACTTACGAAGGCA AATTTAAGCCAGGATTTTAGTTACTTGAGCAACCCAGAAACGGATTATAATAATATGGGCTTTGTGGAAGAGAAACCACAAGTGAGCCAGTTTGGAATAA TGAATTCTTTCCCGGCCATTGGAGATTCTGGGGTGACGCCCTTGACTCCTGACAATGCTTCTATGTATTTCAATTCTGACAAGGGGAGCAACTCATTTGA TTGTGACTTTGGGTGGGGAGAACAAGGCCCTGAAATCTTGTCTGTTCTTGCAGCAACTCCAGAAGTTGATGAATCCGTCTTTGTGGATGCTAATCCTAAG AAGTTGAAATCATACTCTGAGAATGAAGTGCCTGTTGAAGAGAAGAATGGGAAATCTCTGTCCGAAGAGTTGCTGGCTTTTGACAATCAGTTGATGAACC TTCAGATGCCAGATCTTGTGGGTAACTGGGAGGCTTCTCTTGATAGCTTCCTTAATGGAGACACAACTCAGGATGGCACAAACGCAGTGGACTTGTGGAG CTTCGAAGACTTCCCCTCCATGGTTGGGGGAGTTTATTGA
AA sequence Show only first row Show all	>Potri.003G071700.6 pacid=42785604 polypeptide=Potri.003G071650.1.p locus=Potri.003G071700 ID=Potri.003G071700.6.v4.1 annot-version=v4.1 MCGGAIISDFIAPTTTARSSRRLTSGFEWLELKKPFNNKHLKPVVADPEDDFEADFQEFKDESDVDEDYDVFADAKPFAFSASVSEPAQKRGLPRGSTAV KSAGFSGPAEKSAKRKRKNQFRGIRQRPWGKWAAEIRDPRKGVRVWLGTFNTAEEAARAYDSEARRIRGKKAKVNFPDEAPCASARHPIKENSQKRLTKA NLSQDFSYLSNPETDYNNMGFVEEKPQVSQFGIMNSFPAIGDSGVTPLTPDNASMYFNSDKGSNSFDCDFGWGEQGPEILSVLAATPEVDESVFVDANPK KLKSYSENEVPVEEKNGKSLSEELLAFDNQLMNLQMPDLVGNWEASLDSFLNGDTTQDGTNAVDLWSFEDFPSMVGGVY

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DESeq2's median of ratios [POPLAR]

Mapped by: StringTie Salmon Order by: Tissue Experiment Show only core collection Show again Show schematic diagram

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Coexpressed genes

Compare expression of checked genes Schematic diagram [FLAX] Schematic diagram [POPLAR]

*If you select 4 or less genes and then press "compare expression", expression will be shown as a graph. If you select more than 4 genes, expresion will be shown as a heat map.
*Color represents relative expression level among samples for each gene.

At best	At TF class	At alias	At description		Locus	MR	r	Symbol	NWA:WT	NWB:WT	NWA:OE-ARK2	NWB:OE-ARK2	NWA:miRNA-ARK2	NWB:miRNA-ARK2	NW 0hr	WT H20	WT-NW	TUA1dEY NW	TUA1dEY+TUB15 NW	TUA1dY+TUB9 NW	Pde NW	NWA:WT GA	NWBWT GA	TW:WT	TW:WT GA	NWA:OE-ARK2 GA	NWB:OE-ARK2 GA	TW:OE-ARK2	TW:OE-ARK2 GA	NWA:miRNA-ARK2 GA	NWB:miRNA-ARK2 GA	TW:miRNA-ARK2	TW:miRNA-ARK2 GA	TW 2hr	TW 8hr	TW 24hr	TW 48hr	TW 96hr	TW 336hr	WT ACC	35S::etr1-1 H20	35S::etr1-1 ACC	LMX5::etr1-1 H20	LMX5::etr1-1 ACC	WT-TW	TUA1dEY TW	TUA1dEY+TUB15 TW	TUA1dY+TUB9 TW	Pde TW	OW:WT	OW:WT GA	OW:OE-ARK2	OW:OE-ARK2 GA	OW:miRNA-ARK2	OW:miRNA-ARK2 GA	OW 2hr	OW 8hr	OW 24hr	OW 48hr	OW 96hr	OW 336hr	Root CTR	Root LongCold	Root LongDrougt	Root LongHeat	Root LongSalt	Root ShortCold	Root ShortDrougt	Root ShortHeat	Root ShortSalt	Ptr root	Leaf CTR	Leaf LongCold	Leaf LongDrougt	Leaf LongHeat	Leaf LongSalt	Leaf ShortCold	Leaf ShortDrougt	Leaf ShortHeat	Leaf ShortSalt	Ptr leaf	Stem CTR	Stem LongCold	Stem LongDrougt	Stem LongHeat	Stem LongSalt	Stem ShortCold	Stem ShortDrougt	Stem ShortHeat	Stem ShortSalt	Ptr shoot	Ptr xylem	Ptr phloem	Ptr fiber	Ptr vessel	Ptr fiber vessel ray
AT1G53910	AP2_ERF	RAP2.12	related to AP2 12 (.1.2.3)		Potri.003G071700 [exp]	0	1	ERF39,ERF1.4
AT2G43230			Protein kinase superfamily pro...		Potri.007G124000 [exp]	3.46	0.7036
AT1G53910	AP2_ERF	RAP2.12	related to AP2 12 (.1.2.3)		Potri.001G163700 [exp]	6.92	0.6777	Pt-ERF1.3
AT2G36840		ACR10	ACT domain repeats 10, ACT-lik...		Potri.001G442600 [exp]	10.90	0.6762
					Potri.004G236100 [exp]	12.04	0.6792
AT5G22360		ATVAMP714	vesicle-associated membrane pr...		Potri.009G018900 [exp]	17.66	0.6681
AT3G19553			Amino acid permease family pro...		Potri.009G090300 [exp]	18.33	0.6280	PtrLAT7
AT4G24490		ATRGTA1	RAB geranylgeranyl transferase...		Potri.006G225100 [exp]	20.19	0.6197
AT1G68910		WIT2	WPP domain-interacting protein...		Potri.010G135900 [exp]	20.49	0.6821
AT4G23860			PHD finger protein-related (.1...		Potri.001G091600 [exp]	21.90	0.6061
AT5G06560			Protein of unknown function, D...		Potri.006G199000 [exp]	27.45	0.6364

Compare expression of checked genes

Potri.003G071700 coexpression network

*The number of genes in the network is adjusted within 50 genes.
*Gene name represents symbol(s) of closest Arabidopsis gene if symbol(s) for the gene itself doesn't exist.
*Circle diameter represents the number of connection with other genes within this network.
*Color for gene name represents subnetwork based on the result of network clustering.