Plant FIBer expression Database

External link	JGI Phytozome v13 [genome browser] Popgenie AspWood
Symbol
Arabidopsis homologues Show only best Show top 10	Locus ID BLAST score/e-value TF class Alias TAIR10 short description AT3G13540 168 / 1e-52 MYB ATMYB5, ATM2 myb domain protein 5 (.1) AT5G14750 164 / 1e-51 MYB WER1, WER, AtMYB66 WEREWOLF 1, WEREWOLF, myb domain protein 66 (.1) AT5G52600 163 / 3e-51 MYB AtMYB82 myb domain protein 82 (.1) AT5G40330 160 / 6e-50 MYB ATMYBRTF, ATMYB23 myb domain protein 23 (.1) AT1G66370 161 / 8e-50 MYB ATMYB113 myb domain protein 113 (.1) AT3G27920 160 / 8e-50 MYB GL1, ATMYB0, AtGL1 GLABRA 1, myb domain protein 0 (.1) AT5G35550 159 / 7e-49 MYB ATTT2, TT2, AtMYB123 TRANSPARENT TESTA 2, MYB DOMAIN PROTEIN 123, Duplicated homeodomain-like superfamily protein (.1) AT1G22640 156 / 8e-48 MYB AtMYB3 ARABIDOPSIS THALIANA MYB DOMAIN PROTEIN 3, myb domain protein 3 (.1) AT2G16720 156 / 9e-48 MYB AtY49, AtMYB7 ARABIDOPSIS THALIANA MYB DOMAIN PROTEIN 7, myb domain protein 7 (.1) AT4G38620 156 / 2e-47 MYB AtMYB4 myb domain protein 4 (.1)
Paralogs Show only best Show top 10	Gene ID BLAST score/e-value At best hit BLAST score/e-value TAIR10 short description Potri.006G221200 [exp] 207 / 1e-68 AT3G13540 169 / 6e-53 myb domain protein 5 (.1) Potri.003G064600 [exp] 205 / 6e-68 AT5G14750 166 / 5e-52 WEREWOLF 1, WEREWOLF, myb domain protein 66 (.1) Potri.018G049000 [exp] 204 / 2e-67 AT5G14750 167 / 1e-52 WEREWOLF 1, WEREWOLF, myb domain protein 66 (.1) Potri.001G169600 [exp] 202 / 8e-67 AT5G14750 167 / 9e-53 WEREWOLF 1, WEREWOLF, myb domain protein 66 (.1) Potri.013G056500 [exp] 177 / 2e-55 AT3G13540 236 / 4e-77 myb domain protein 5 (.1) Potri.003G219900 [exp] 174 / 3e-54 AT3G13540 243 / 1e-79 myb domain protein 5 (.1) Potri.001G005100 [exp] 173 / 9e-54 AT3G13540 247 / 1e-81 myb domain protein 5 (.1) Potri.013G056400 [exp] 172 / 1e-53 AT3G13540 226 / 2e-73 myb domain protein 5 (.1) Potri.019G036340 [exp] 171 / 3e-53 AT3G13540 240 / 6e-79 myb domain protein 5 (.1)
Flax homologues Show only best Show top 10	Locus ID BLAST score/e-value At best hit BLAST score/e-value TAIR10 short description Lus10000470 [exp] 181 / 6e-57 AT2G16720 196 / 2e-61 ARABIDOPSIS THALIANA MYB DOMAIN PROTEIN 7, myb domain protein 7 (.1) Lus10033438 [exp] 179 / 4e-56 AT1G22640 194 / 2e-61 ARABIDOPSIS THALIANA MYB DOMAIN PROTEIN 3, myb domain protein 3 (.1) Lus10039173 [exp] 172 / 5e-54 AT3G13540 244 / 3e-81 myb domain protein 5 (.1) Lus10013762 [exp] 169 / 1e-52 AT3G13540 241 / 1e-79 myb domain protein 5 (.1) Lus10041888 [exp] 159 / 2e-49 AT4G38620 245 / 5e-82 myb domain protein 4 (.1) Lus10028435 [exp] 158 / 6e-49 AT2G16720 246 / 2e-82 ARABIDOPSIS THALIANA MYB DOMAIN PROTEIN 7, myb domain protein 7 (.1) Lus10028513 [exp] 159 / 3e-48 AT1G66370 205 / 3e-65 myb domain protein 113 (.1) Lus10042522 [exp] 157 / 3e-48 AT1G66370 181 / 7e-57 myb domain protein 113 (.1) Lus10009130 [exp] 157 / 9e-48 AT1G66370 202 / 3e-64 myb domain protein 113 (.1) Lus10000411 [exp] 154 / 7e-47 AT4G09460 300 / 5e-103 myb domain protein 6 (.1)
PFAM info	Clan ID Clan name Pfam ID Pfam name Pfam description CL0123 [poplar] [flax] HTH PF00249 [poplar] [flax] Myb_DNA-binding Myb-like DNA-binding domain
Representative CDS sequence Show only first row Show all	>Potri.003G079100.1 pacid=42784537 polypeptide=Potri.003G079100.1.p locus=Potri.003G079100 ID=Potri.003G079100.1.v4.1 annot-version=v4.1 ATGGCTCCCAAGAATACTGTCACTGATGCATCCACTAAAAAAGTTATGAGCAAAGGAGCATGGACGGCAGAGGAAGATAACAAACTAGCTCACTGCGTTG AAGTTCATGGTGCAAAAAGGTGGAAAACAGTTGCACTTAAATCAGGTTTAAATCGATGTGGAAAGAGTTGCAGATTGAGATGGATGAACTATTTGAGACC TAACATCAAGAGAGGCAACATATCATGTGACGAAGAGGACTTGATTATCAGGCTTCATAAGCTGCTAGGAAACAGGTGGTCACTGATTGCTGGGAGACTT CCAGGACGAACAGATAATGAAATTAAGAACTACTGGAATTCTCATTTGAGCAAGAAAATTATAGATCAAACTCAAAAGGAGAAAATGCCAGATCAACCTT CCACGCCGCTAGCCACCATGCACCAAAAGACTTCGGATGCCATTCAGGTCGAGGAAGAGGGCAGCGCTAGAGAAGCATGGAACTTGGAGACTGGGAACTT TGATGTCGACGAGTTCTTTGACTTCTCCGCTGAAGGATTTTAA
AA sequence Show only first row Show all	>Potri.003G079100.1 pacid=42784537 polypeptide=Potri.003G079100.1.p locus=Potri.003G079100 ID=Potri.003G079100.1.v4.1 annot-version=v4.1 MAPKNTVTDASTKKVMSKGAWTAEEDNKLAHCVEVHGAKRWKTVALKSGLNRCGKSCRLRWMNYLRPNIKRGNISCDEEDLIIRLHKLLGNRWSLIAGRL PGRTDNEIKNYWNSHLSKKIIDQTQKEKMPDQPSTPLATMHQKTSDAIQVEEEGSAREAWNLETGNFDVDEFFDFSAEGF

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DESeq2's median of ratios [POPLAR]

Mapped by: StringTie Salmon Order by: Tissue Experiment Show only core collection Show again Show schematic diagram

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Coexpressed genes

Compare expression of checked genes Schematic diagram [FLAX] Schematic diagram [POPLAR]

*If you select 4 or less genes and then press "compare expression", expression will be shown as a graph. If you select more than 4 genes, expresion will be shown as a heat map.
*Color represents relative expression level among samples for each gene.

At best	At TF class	At alias	At description		Locus	MR	r	Symbol	NWA:WT	NWB:WT	NWA:OE-ARK2	NWB:OE-ARK2	NWA:miRNA-ARK2	NWB:miRNA-ARK2	NW 0hr	WT H20	WT-NW	TUA1dEY NW	TUA1dEY+TUB15 NW	TUA1dY+TUB9 NW	Pde NW	NWA:WT GA	NWBWT GA	TW:WT	TW:WT GA	NWA:OE-ARK2 GA	NWB:OE-ARK2 GA	TW:OE-ARK2	TW:OE-ARK2 GA	NWA:miRNA-ARK2 GA	NWB:miRNA-ARK2 GA	TW:miRNA-ARK2	TW:miRNA-ARK2 GA	TW 2hr	TW 8hr	TW 24hr	TW 48hr	TW 96hr	TW 336hr	WT ACC	35S::etr1-1 H20	35S::etr1-1 ACC	LMX5::etr1-1 H20	LMX5::etr1-1 ACC	WT-TW	TUA1dEY TW	TUA1dEY+TUB15 TW	TUA1dY+TUB9 TW	Pde TW	OW:WT	OW:WT GA	OW:OE-ARK2	OW:OE-ARK2 GA	OW:miRNA-ARK2	OW:miRNA-ARK2 GA	OW 2hr	OW 8hr	OW 24hr	OW 48hr	OW 96hr	OW 336hr	Root CTR	Root LongCold	Root LongDrougt	Root LongHeat	Root LongSalt	Root ShortCold	Root ShortDrougt	Root ShortHeat	Root ShortSalt	Ptr root	Leaf CTR	Leaf LongCold	Leaf LongDrougt	Leaf LongHeat	Leaf LongSalt	Leaf ShortCold	Leaf ShortDrougt	Leaf ShortHeat	Leaf ShortSalt	Ptr leaf	Stem CTR	Stem LongCold	Stem LongDrougt	Stem LongHeat	Stem LongSalt	Stem ShortCold	Stem ShortDrougt	Stem ShortHeat	Stem ShortSalt	Ptr shoot	Ptr xylem	Ptr phloem	Ptr fiber	Ptr vessel	Ptr fiber vessel ray
AT3G13540	MYB	ATMYB5, ATM2	myb domain protein 5 (.1)		Potri.003G079100 [exp]	0	1
					Potri.003G116550 [exp]	3.46	0.9428
AT5G05800			unknown protein		Potri.011G125150 [exp]	5.74	0.9311
					Potri.014G007300 [exp]	6.48	0.9278
AT5G53210	bHLH	SPCH, bHLH098	SPEECHLESS, basic helix-loop-h...		Potri.012G031800 [exp]	8.94	0.8942
AT5G53210	bHLH	SPCH, bHLH098	SPEECHLESS, basic helix-loop-h...		Potri.015G022300 [exp]	21.90	0.9114
					Potri.005G192466 [exp]	22.97	0.8786
AT5G12980			Cell differentiation, Rcd1-lik...		Potri.014G155500 [exp]	26.15	0.8948
AT5G19600		SULTR3;5	sulfate transporter 3;5 (.1)		Potri.006G158900 [exp]	27.85	0.9365
AT1G32780			GroES-like zinc-binding dehydr...		Potri.011G152800 [exp]	28.56	0.9186
AT5G19600		SULTR3;5	sulfate transporter 3;5 (.1)		Potri.006G156038 [exp]	30.29	0.9357

Compare expression of checked genes

Potri.003G079100 coexpression network

*The number of genes in the network is adjusted within 50 genes.
*Gene name represents symbol(s) of closest Arabidopsis gene if symbol(s) for the gene itself doesn't exist.
*Circle diameter represents the number of connection with other genes within this network.
*Color for gene name represents subnetwork based on the result of network clustering.