Plant FIBer expression Database

External link	JGI Phytozome v13 [genome browser] Popgenie AspWood
Symbol
Arabidopsis homologues Show only best Show top 10	Locus ID BLAST score/e-value TF class Alias TAIR10 short description AT4G17490 159 / 3e-46 AP2_ERF ERF-6-6, ATERF6 ethylene responsive element binding factor 6 (.1) AT5G51190 155 / 1e-45 AP2_ERF Integrase-type DNA-binding superfamily protein (.1) AT5G47230 152 / 3e-43 AP2_ERF ATERF5, ATERF-5, ERF5 ETHYLENE RESPONSIVE ELEMENT BINDING FACTOR- 5, ethylene responsive element binding factor 5 (.1) AT5G61600 129 / 3e-35 AP2_ERF ERF104 ethylene response factor 104 (.1) AT5G07580 118 / 6e-31 AP2_ERF Integrase-type DNA-binding superfamily protein (.1) AT4G17500 110 / 7e-28 AP2_ERF ATERF-1, AtERF1 ethylene responsive element binding factor 1 (.1) AT2G44840 105 / 1e-26 AP2_ERF ATERF13, EREBP ethylene-responsive element binding factor 13 (.1) AT5G43410 102 / 1e-26 AP2_ERF Integrase-type DNA-binding superfamily protein (.1) AT5G47220 105 / 3e-26 AP2_ERF ATERF-2, ERF2, ATERF2 ETHYLENE RESPONSE FACTOR- 2, ethylene responsive element binding factor 2 (.1) AT5G61590 103 / 7e-26 AP2_ERF Integrase-type DNA-binding superfamily protein (.1)
Paralogs Show only best Show top 10	Gene ID BLAST score/e-value At best hit BLAST score/e-value TAIR10 short description Potri.001G154200 [exp] 359 / 2e-123 AT4G17490 159 / 2e-46 ethylene responsive element binding factor 6 (.1) Potri.003G150800 [exp] 159 / 3e-46 AT5G51190 185 / 7e-58 Integrase-type DNA-binding superfamily protein (.1) Potri.001G079800 [exp] 155 / 1e-44 AT5G51190 186 / 2e-58 Integrase-type DNA-binding superfamily protein (.1) Potri.001G079600 [exp] 127 / 2e-34 AT5G07580 145 / 1e-42 Integrase-type DNA-binding superfamily protein (.1) Potri.003G151000 [exp] 124 / 2e-33 AT5G07580 164 / 6e-50 Integrase-type DNA-binding superfamily protein (.1) Potri.004G051700 [exp] 116 / 5e-31 AT5G47220 111 / 1e-30 ETHYLENE RESPONSE FACTOR- 2, ethylene responsive element binding factor 2 (.1) Potri.010G072400 [exp] 106 / 9e-28 AT3G23230 85 / 1e-21 Integrase-type DNA-binding superfamily protein (.1) Potri.004G051800 [exp] 109 / 1e-27 AT4G18450 127 / 7e-35 Integrase-type DNA-binding superfamily protein (.1) Potri.011G061800 [exp] 108 / 4e-27 AT4G18450 134 / 2e-37 Integrase-type DNA-binding superfamily protein (.1)
Flax homologues Show only best Show top 10	Locus ID BLAST score/e-value At best hit BLAST score/e-value TAIR10 short description Lus10042996 [exp] 139 / 7e-39 AT5G51190 189 / 6e-60 Integrase-type DNA-binding superfamily protein (.1) Lus10032499 [exp] 128 / 1e-34 AT5G51190 186 / 8e-59 Integrase-type DNA-binding superfamily protein (.1) Lus10032498 [exp] 118 / 3e-31 AT5G07580 144 / 1e-42 Integrase-type DNA-binding superfamily protein (.1) Lus10013959 [exp] 111 / 8e-30 AT3G23240 124 / 2e-36 ethylene response factor 1 (.1) Lus10042995 [exp] 113 / 1e-29 AT5G07580 129 / 1e-36 Integrase-type DNA-binding superfamily protein (.1) Lus10011830 [exp] 108 / 2e-28 AT3G23230 134 / 4e-41 Integrase-type DNA-binding superfamily protein (.1) Lus10025430 [exp] 108 / 3e-28 AT3G23240 132 / 6e-39 ethylene response factor 1 (.1) Lus10004752 [exp] 107 / 4e-27 AT5G07580 122 / 4e-34 Integrase-type DNA-binding superfamily protein (.1) Lus10040167 [exp] 108 / 6e-27 AT5G07580 130 / 1e-35 Integrase-type DNA-binding superfamily protein (.1) Lus10029334 [exp] 105 / 8e-27 AT2G44840 152 / 1e-46 ethylene-responsive element binding factor 13 (.1)
PFAM info	Clan ID Clan name Pfam ID Pfam name Pfam description CL0081 [poplar] [flax] MBD-like PF00847 [poplar] [flax] AP2 AP2 domain
Representative CDS sequence Show only first row Show all	>Potri.003G080600.2 pacid=42785033 polypeptide=Potri.003G080600.2.p locus=Potri.003G080600 ID=Potri.003G080600.2.v4.1 annot-version=v4.1 ATGGAAACGGATCAAACTCAGCAAGTATCTTCAGCCTTAGAGTCCATCAAGCAACATTTGCTTGGCGATCTTCTTTCACCTGTTGCTACCTCCTCCGCTT CTTTTTATCAATTTTCTACAAATTCTGCAACCTCTACTTCCCTACAGTGTGAGACTACTAGCTGCTCAAGTTCTGACTTTTCCACGGCACTCCCTGATTT TTTCGGTTCTCTTCTCGAGTTCACTTCCGTTTTGAGTCCCTCGCAAGAGAACAACACCAATATCTTCGAATTTGAACCTAAACCTGAAATCATTGATCTC TTTACGCCAACGCCACTCAACTCAACCTCCCACATCAATTTCCAATCAAGCAGCAGCAGCACCGGCAGCAGCGGCGGCAGTAACTTCTTCGAGTTTGAAT CCAAACCTCAAATTCATCAGAATTTCGAGTTTGAGTCGAAACCACAAATCGTTTCTCAGCGAAGCAACAGTTTCTTCTATGAAGAACCAAAGCCTCAGGT TCAAACAGCTCGGAAACGCTCTTTGAAAATATCGCTGCCTAGCAAAAAACCCGAATGGATCCAGTTTTCTTCTAACCCAAACCCGCAAACCGTGGAGGAT AATTCTGGTGTTGCTGCTCAAGAGATAAGGCATTACAGAGGAGTCCGACGCAGGCCATGGGGCAAGTACGCAGCGGAGATCCGGGACCCGAACCGGAGAG GTTCACGAGTGTGGCTAGGAACCTTCGATACAGACCTTGAAGCCGCTAAAGCCTATGATCGAGCTGCCTTCAAGCTGCGTGGGTCGAAAGCGATTCTCAA TTTCCCATTAGAAGCCGGGAGGTGTGAGGGGGAAAGTGAAAGGAAAAGAAGTAGAGAGGGTGGCGTGGAAGAGAGAGAGGATGTGAAGAGGGTAATGACG GTGGTGAAGAGGGAGGAACCTGAAACTGAGGGGGATATCCCGTTGACGCCGTCAAGTTGGACGGCTTTTTGGGATGGTGGTGATACGAAGGATGTCTTCA ATGTGCCCCCGCTGTCTCCGTTATCTCCTCACCCGCCATTGGGATTCCCACAGCTAACGGTTATTTGA
AA sequence Show only first row Show all	>Potri.003G080600.2 pacid=42785033 polypeptide=Potri.003G080600.2.p locus=Potri.003G080600 ID=Potri.003G080600.2.v4.1 annot-version=v4.1 METDQTQQVSSALESIKQHLLGDLLSPVATSSASFYQFSTNSATSTSLQCETTSCSSSDFSTALPDFFGSLLEFTSVLSPSQENNTNIFEFEPKPEIIDL FTPTPLNSTSHINFQSSSSSTGSSGGSNFFEFESKPQIHQNFEFESKPQIVSQRSNSFFYEEPKPQVQTARKRSLKISLPSKKPEWIQFSSNPNPQTVED NSGVAAQEIRHYRGVRRRPWGKYAAEIRDPNRRGSRVWLGTFDTDLEAAKAYDRAAFKLRGSKAILNFPLEAGRCEGESERKRSREGGVEEREDVKRVMT VVKREEPETEGDIPLTPSSWTAFWDGGDTKDVFNVPPLSPLSPHPPLGFPQLTVI

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DESeq2's median of ratios [POPLAR]

Mapped by: StringTie Salmon Order by: Tissue Experiment Show only core collection Show again Show schematic diagram

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Coexpressed genes

Compare expression of checked genes Schematic diagram [FLAX] Schematic diagram [POPLAR]

*If you select 4 or less genes and then press "compare expression", expression will be shown as a graph. If you select more than 4 genes, expresion will be shown as a heat map.
*Color represents relative expression level among samples for each gene.

At best	At TF class	At alias	At description		Locus	MR	r	Symbol	NWA:WT	NWB:WT	NWA:OE-ARK2	NWB:OE-ARK2	NWA:miRNA-ARK2	NWB:miRNA-ARK2	NW 0hr	WT H20	WT-NW	TUA1dEY NW	TUA1dEY+TUB15 NW	TUA1dY+TUB9 NW	Pde NW	NWA:WT GA	NWBWT GA	TW:WT	TW:WT GA	NWA:OE-ARK2 GA	NWB:OE-ARK2 GA	TW:OE-ARK2	TW:OE-ARK2 GA	NWA:miRNA-ARK2 GA	NWB:miRNA-ARK2 GA	TW:miRNA-ARK2	TW:miRNA-ARK2 GA	TW 2hr	TW 8hr	TW 24hr	TW 48hr	TW 96hr	TW 336hr	WT ACC	35S::etr1-1 H20	35S::etr1-1 ACC	LMX5::etr1-1 H20	LMX5::etr1-1 ACC	WT-TW	TUA1dEY TW	TUA1dEY+TUB15 TW	TUA1dY+TUB9 TW	Pde TW	OW:WT	OW:WT GA	OW:OE-ARK2	OW:OE-ARK2 GA	OW:miRNA-ARK2	OW:miRNA-ARK2 GA	OW 2hr	OW 8hr	OW 24hr	OW 48hr	OW 96hr	OW 336hr	Root CTR	Root LongCold	Root LongDrougt	Root LongHeat	Root LongSalt	Root ShortCold	Root ShortDrougt	Root ShortHeat	Root ShortSalt	Ptr root	Leaf CTR	Leaf LongCold	Leaf LongDrougt	Leaf LongHeat	Leaf LongSalt	Leaf ShortCold	Leaf ShortDrougt	Leaf ShortHeat	Leaf ShortSalt	Ptr leaf	Stem CTR	Stem LongCold	Stem LongDrougt	Stem LongHeat	Stem LongSalt	Stem ShortCold	Stem ShortDrougt	Stem ShortHeat	Stem ShortSalt	Ptr shoot	Ptr xylem	Ptr phloem	Ptr fiber	Ptr vessel	Ptr fiber vessel ray
AT4G17490	AP2_ERF	ERF-6-6, ATERF6	ethylene responsive element bi...		Potri.003G080600 [exp]	0	1
AT5G07010		ATST2A	ARABIDOPSIS THALIANA SULFOTRAN...		Potri.001G036600 [exp]	4.89	0.9447
AT5G42380		CML39, CML37	CALMODULIN LIKE 39, calmodulin...		Potri.002G132500 [exp]	5.83	0.9448
					Potri.018G122600 [exp]	8.24	0.9352
					Potri.007G076600 [exp]	9.48	0.9308
AT4G37160		SKS15	SKU5 similar 15 (.1)		Potri.007G038200 [exp]	10.09	0.9287
AT5G35370			S-locus lectin protein kinase ...		Potri.019G013797 [exp]	12.00	0.9107
AT3G12580		ATHSP70, HSP70	ARABIDOPSIS HEAT SHOCK PROTEIN...		Potri.008G054900 [exp]	12.72	0.9246	HSP70.7
AT1G21326			VQ motif-containing protein (....		Potri.002G070600 [exp]	14.69	0.9034
AT3G10080			RmlC-like cupins superfamily p...		Potri.010G238100 [exp]	15.16	0.9238
					Potri.018G119000 [exp]	15.87	0.8941

Compare expression of checked genes

Potri.003G080600 coexpression network

*The number of genes in the network is adjusted within 50 genes.
*Gene name represents symbol(s) of closest Arabidopsis gene if symbol(s) for the gene itself doesn't exist.
*Circle diameter represents the number of connection with other genes within this network.
*Color for gene name represents subnetwork based on the result of network clustering.