Plant FIBer expression Database

External link	JGI Phytozome v13 [genome browser] Popgenie AspWood
Symbol
Arabidopsis homologues Show only best Show top 10	Locus ID BLAST score/e-value TF class Alias TAIR10 short description AT5G04770 509 / 9e-176 CAT6, ATCAT6 ARABIDOPSIS THALIANA CATIONIC AMINO ACID TRANSPORTER 6, cationic amino acid transporter 6 (.1) AT3G10600 498 / 2e-171 CAT7 cationic amino acid transporter 7 (.1) AT4G21120 414 / 2e-138 CAT1, AAT1 CATIONIC AMINO ACID TRANSPORTER 1, amino acid transporter 1 (.1) AT1G17120 351 / 8e-114 CAT8 cationic amino acid transporter 8 (.1) AT2G34960 350 / 1e-113 CAT5 cationic amino acid transporter 5 (.1) AT1G58030 194 / 3e-54 CAT2 cationic amino acid transporter 2 (.1) AT3G03720 194 / 3e-54 CAT4 cationic amino acid transporter 4 (.1.2) AT5G36940 193 / 6e-54 CAT3 cationic amino acid transporter 3 (.1) AT1G05940 189 / 1e-52 CAT9 cationic amino acid transporter 9 (.1)
Paralogs Show only best Show top 10	Gene ID BLAST score/e-value At best hit BLAST score/e-value TAIR10 short description Potri.001G150700 [exp] 946 / 0 AT5G04770 519 / 2e-179 ARABIDOPSIS THALIANA CATIONIC AMINO ACID TRANSPORTER 6, cationic amino acid transporter 6 (.1) Potri.010G241000 [exp] 504 / 1e-173 AT3G10600 781 / 0.0 cationic amino acid transporter 7 (.1) Potri.008G017100 [exp] 503 / 3e-173 AT3G10600 778 / 0.0 cationic amino acid transporter 7 (.1) Potri.015G133100 [exp] 409 / 2e-136 AT4G21120 845 / 0.0 CATIONIC AMINO ACID TRANSPORTER 1, amino acid transporter 1 (.1) Potri.012G131300 [exp] 399 / 2e-132 AT4G21120 848 / 0.0 CATIONIC AMINO ACID TRANSPORTER 1, amino acid transporter 1 (.1) Potri.013G030833 [exp] 392 / 2e-129 AT4G21120 833 / 0.0 CATIONIC AMINO ACID TRANSPORTER 1, amino acid transporter 1 (.1) Potri.013G030900 [exp] 392 / 2e-129 AT4G21120 833 / 0.0 CATIONIC AMINO ACID TRANSPORTER 1, amino acid transporter 1 (.1) Potri.003G154600 [exp] 370 / 2e-121 AT2G34960 870 / 0.0 cationic amino acid transporter 5 (.1) Potri.001G378500 [exp] 347 / 3e-112 AT1G17120 785 / 0.0 cationic amino acid transporter 8 (.1)
Flax homologues Show only best Show top 10	Locus ID BLAST score/e-value At best hit BLAST score/e-value TAIR10 short description Lus10040142 [exp] 791 / 0 AT5G04770 547 / 0.0 ARABIDOPSIS THALIANA CATIONIC AMINO ACID TRANSPORTER 6, cationic amino acid transporter 6 (.1) Lus10000962 [exp] 789 / 0 AT5G04770 543 / 0.0 ARABIDOPSIS THALIANA CATIONIC AMINO ACID TRANSPORTER 6, cationic amino acid transporter 6 (.1) Lus10023271 [exp] 416 / 6e-139 AT4G21120 902 / 0.0 CATIONIC AMINO ACID TRANSPORTER 1, amino acid transporter 1 (.1) Lus10001581 [exp] 402 / 9e-131 AT4G21120 915 / 0.0 CATIONIC AMINO ACID TRANSPORTER 1, amino acid transporter 1 (.1) Lus10042817 [exp] 347 / 6e-112 AT4G21120 731 / 0.0 CATIONIC AMINO ACID TRANSPORTER 1, amino acid transporter 1 (.1) Lus10005574 [exp] 344 / 8e-111 AT1G17120 811 / 0.0 cationic amino acid transporter 8 (.1) Lus10020320 [exp] 200 / 2e-56 AT1G58030 912 / 0.0 cationic amino acid transporter 2 (.1) Lus10005671 [exp] 199 / 1e-55 AT1G58030 958 / 0.0 cationic amino acid transporter 2 (.1) Lus10020322 [exp] 199 / 1e-55 AT1G58030 949 / 0.0 cationic amino acid transporter 2 (.1) Lus10013638 [exp] 194 / 6e-54 AT1G58030 964 / 0.0 cationic amino acid transporter 2 (.1)
PFAM info	Clan ID Clan name Pfam ID Pfam name Pfam description CL0062 [poplar] [flax] APC PF13906 [poplar] [flax] AA_permease_C C-terminus of AA_permease
Representative CDS sequence Show only first row Show all	>Potri.003G083700.1 pacid=42785573 polypeptide=Potri.003G083700.1.p locus=Potri.003G083700 ID=Potri.003G083700.1.v4.1 annot-version=v4.1 ATGGCAACCATTCGATCCACACCCACAAACGTTTCCTTCTCCAACTACCTCCAGTCCCTCTCCCAAACCCCTCACAGGCTTAGAAAAAGAATGCTAGCTA CTTGGACTCCTGACCAGGAACTTAACCAGGTTAGGCTAAGGTCTGGTGCAGATATGATGAGGAAACTCAAGTGGTATGACCTGATAGCTCTTGGAATAGG AGGGATGCTTGGTGTTGGAGTTTTTGTTACCACTGGCCTTGTGGCCCATCAAATCTCTGGCCCCTCAGTTTTTATCTCTTATATCATTGCTGGAATATCA GCTCTTCTTTCTTCTTTATGTTACACTGAATTCTCTGTTCAGATTCCTGTTGCTGGGGGTGCCTTCAGCTATCTAAGGGTGACTTTTGGAGAGTTTGTAG GTTATTTTGCTGGGGCAAACATTCTGATGGAATATGTATTATCGAATGCTGCGGTTGCAAGGACTTTCACGGAATATCTATGCCATGCTGTGGGAGAGAA CCCAAACTCATGGAGATTCGAAGTGGATGGACTAGTAGAGGGTTACAATAAGTTGGATTTTCCAGCTGTGGCTCTTATTCTTCTCCTTACTCTCTGTCTG TGCCATAGTACAAAGGAAAGCTCAGTATTGAACCTTGTTATGACGGTCTTTCATTTGATTTTCTTTGGATTCATTATAATTGCTGGTTTCTATAAAGGGA GTGCCAAGAACTTGGTTGAGCCCGGAGGGCTTGCTCCTTTTGGTGTCAAGGGTATTCTTGATGGAGCAGCTACGGTTTATTTCAGCTATATTGGCTATGA CTCGGTTTCAACCATGGCAGAAGAGATCCGAAACCCTGCAAAAAGCCTTCCAGTGGGCATAGTAGGATCTGTTCTCATTGTCACCGGGCTATATTGCCTC GTGGCCTTATCTTTATGTTTTCTGGTCCCTTACAATATGATAGATAAAGATGCATCATTTTCTGTCGCTTTCCAAAAGATCGGTTGGAAGTGGGCGGGCA ATGTGGTTGGGGCCGGAGCAAGCTTGGGAATTGTTGCTTCTCTCCTGGTTGCCATGTTAGGCCAAGCTAGATACCTTTGTGTTATTGGAAGGGCCCGGCT TGTGCCTTCTTGGTTGGCCAAGGTGAATCCCTCCACAGGCACCCCTTTGAATGCTACACTCTTCTTGGGTCTTTGCACAGCTTCAATTGCACTCTTTACC GAACTCCACATAATTATTGATATAATTTCCATCAGCACACTCTTGGTGTTCTACTTGGTGGCAAATGCTCTCATCTATCGTCGATATGTTATCGTTAGCC ACAACCCTCCTTCACAAACCCTCTTGTTCCTCTTCCTCCTCTCTTCTTGTTCAATTGGCTTCTCTATGTCTTGGAAACTTGAAGAGCAGTGGTGGGTTTT ACCAGTATTTGGTGGATTCATGATTACGATCACAGCCTTCTTTCAATACATGGTACCTTCCATTTGCCAAACTAATGAAGAGTGGTCAGTGCCATTCATG CCATGGCCGGCTGTAGCATCAATATTCCTTAATGTCTTCCTCGTGACATCACTAAAGATTCCGTCCTTCCAAAGGTTTGGTATATGGGCATGTTTGATAA CATTGTTTTATGTTCTATACGGTGTTCACTCAACTTATCGAGCTGAAGAGATGGAAGTGGGTGTTGGTGACATCTCACACCCATCAACCCAACAAAGCAA GCTAGATATTCAGCTGCTATGA
AA sequence Show only first row Show all	>Potri.003G083700.1 pacid=42785573 polypeptide=Potri.003G083700.1.p locus=Potri.003G083700 ID=Potri.003G083700.1.v4.1 annot-version=v4.1 MATIRSTPTNVSFSNYLQSLSQTPHRLRKRMLATWTPDQELNQVRLRSGADMMRKLKWYDLIALGIGGMLGVGVFVTTGLVAHQISGPSVFISYIIAGIS ALLSSLCYTEFSVQIPVAGGAFSYLRVTFGEFVGYFAGANILMEYVLSNAAVARTFTEYLCHAVGENPNSWRFEVDGLVEGYNKLDFPAVALILLLTLCL CHSTKESSVLNLVMTVFHLIFFGFIIIAGFYKGSAKNLVEPGGLAPFGVKGILDGAATVYFSYIGYDSVSTMAEEIRNPAKSLPVGIVGSVLIVTGLYCL VALSLCFLVPYNMIDKDASFSVAFQKIGWKWAGNVVGAGASLGIVASLLVAMLGQARYLCVIGRARLVPSWLAKVNPSTGTPLNATLFLGLCTASIALFT ELHIIIDIISISTLLVFYLVANALIYRRYVIVSHNPPSQTLLFLFLLSSCSIGFSMSWKLEEQWWVLPVFGGFMITITAFFQYMVPSICQTNEEWSVPFM PWPAVASIFLNVFLVTSLKIPSFQRFGIWACLITLFYVLYGVHSTYRAEEMEVGVGDISHPSTQQSKLDIQLL

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DESeq2's median of ratios [POPLAR]

Mapped by: StringTie Salmon Order by: Tissue Experiment Show only core collection Show again Show schematic diagram

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Coexpressed genes

Compare expression of checked genes Schematic diagram [FLAX] Schematic diagram [POPLAR]

*If you select 4 or less genes and then press "compare expression", expression will be shown as a graph. If you select more than 4 genes, expresion will be shown as a heat map.
*Color represents relative expression level among samples for each gene.

At best	At TF class	At alias	At description		Locus	MR	r	Symbol	NWA:WT	NWB:WT	NWA:OE-ARK2	NWB:OE-ARK2	NWA:miRNA-ARK2	NWB:miRNA-ARK2	NW 0hr	WT H20	WT-NW	TUA1dEY NW	TUA1dEY+TUB15 NW	TUA1dY+TUB9 NW	Pde NW	NWA:WT GA	NWBWT GA	TW:WT	TW:WT GA	NWA:OE-ARK2 GA	NWB:OE-ARK2 GA	TW:OE-ARK2	TW:OE-ARK2 GA	NWA:miRNA-ARK2 GA	NWB:miRNA-ARK2 GA	TW:miRNA-ARK2	TW:miRNA-ARK2 GA	TW 2hr	TW 8hr	TW 24hr	TW 48hr	TW 96hr	TW 336hr	WT ACC	35S::etr1-1 H20	35S::etr1-1 ACC	LMX5::etr1-1 H20	LMX5::etr1-1 ACC	WT-TW	TUA1dEY TW	TUA1dEY+TUB15 TW	TUA1dY+TUB9 TW	Pde TW	OW:WT	OW:WT GA	OW:OE-ARK2	OW:OE-ARK2 GA	OW:miRNA-ARK2	OW:miRNA-ARK2 GA	OW 2hr	OW 8hr	OW 24hr	OW 48hr	OW 96hr	OW 336hr	Root CTR	Root LongCold	Root LongDrougt	Root LongHeat	Root LongSalt	Root ShortCold	Root ShortDrougt	Root ShortHeat	Root ShortSalt	Ptr root	Leaf CTR	Leaf LongCold	Leaf LongDrougt	Leaf LongHeat	Leaf LongSalt	Leaf ShortCold	Leaf ShortDrougt	Leaf ShortHeat	Leaf ShortSalt	Ptr leaf	Stem CTR	Stem LongCold	Stem LongDrougt	Stem LongHeat	Stem LongSalt	Stem ShortCold	Stem ShortDrougt	Stem ShortHeat	Stem ShortSalt	Ptr shoot	Ptr xylem	Ptr phloem	Ptr fiber	Ptr vessel	Ptr fiber vessel ray
AT5G04770		CAT6, ATCAT6	ARABIDOPSIS THALIANA CATIONIC ...		Potri.003G083700 [exp]	0	1
AT1G75590			SAUR-like auxin-responsive pro...		Potri.005G237000 [exp]	4.24	0.6452
AT5G25830	GATA	GATA12	GATA transcription factor 12 (...		Potri.006G237700 [exp]	7.93	0.6737
AT2G19400			AGC (cAMP-dependent, cGMP-depe...		Potri.006G146900 [exp]	8.00	0.6732
AT5G49665			Zinc finger (C3HC4-type RING f...		Potri.002G107902 [exp]	13.74	0.5613
AT4G22190			unknown protein		Potri.004G003900 [exp]	22.97	0.5599
AT4G13650			Pentatricopeptide repeat (PPR)...		Potri.004G047800 [exp]	32.74	0.6118
AT2G31280	bHLH	bHLH155 ,CPuORF...	conserved peptide upstream ope...		Potri.002G040600 [exp]	39.38	0.5862
AT1G28440		HSL1	HAESA-like 1 (.1)		Potri.011G058100 [exp]	84.00	0.4774
AT4G00340		RLK4	receptor-like protein kinase 4...		Potri.014G086900 [exp]	84.09	0.5055
AT3G57040		ATRR4, ARR9	RESPONSE REGULATOR 4, response...		Potri.006G041100 [exp]	88.32	0.5187	ARR9.1

Compare expression of checked genes

Potri.003G083700 coexpression network

*The number of genes in the network is adjusted within 50 genes.
*Gene name represents symbol(s) of closest Arabidopsis gene if symbol(s) for the gene itself doesn't exist.
*Circle diameter represents the number of connection with other genes within this network.
*Color for gene name represents subnetwork based on the result of network clustering.