Plant FIBer expression Database

External link	JGI Phytozome v13 [genome browser] Popgenie AspWood
Symbol
Arabidopsis homologues Show only best Show top 10	Locus ID BLAST score/e-value TF class Alias TAIR10 short description AT5G36930 347 / 3e-108 Disease resistance protein (TIR-NBS-LRR class) family (.1), Disease resistance protein (TIR-NBS-LRR class) family (.2) AT5G17680 285 / 2e-85 disease resistance protein (TIR-NBS-LRR class), putative (.1) AT1G27170 283 / 2e-84 transmembrane receptors;ATP binding (.1.2) AT4G12010 275 / 4e-82 Disease resistance protein (TIR-NBS-LRR class) family (.1) AT5G58120 270 / 1e-80 Disease resistance protein (TIR-NBS-LRR class) family (.1) AT1G64070 269 / 1e-80 RLM1 RESISTANCE TO LEPTOSPHAERIA MACULANS 1, Disease resistance protein (TIR-NBS-LRR class) family (.1) AT3G44480 269 / 7e-80 COG1, RPP10, RPP1 recognition of peronospora parasitica 1, Disease resistance protein (TIR-NBS-LRR class) family (.1) AT5G18360 263 / 5e-79 Disease resistance protein (TIR-NBS-LRR class) family (.1) AT3G44630 266 / 1e-78 Disease resistance protein (TIR-NBS-LRR class) family (.1), Disease resistance protein (TIR-NBS-LRR class) family (.2), Disease resistance protein (TIR-NBS-LRR class) family (.3) AT5G41750 262 / 1e-77 Disease resistance protein (TIR-NBS-LRR class) family (.1), Disease resistance protein (TIR-NBS-LRR class) family (.2)
Paralogs Show only best Show top 10	Gene ID BLAST score/e-value At best hit BLAST score/e-value TAIR10 short description Potri.012G135700 [exp] 538 / 0 AT5G36930 640 / 0.0 Disease resistance protein (TIR-NBS-LRR class) family (.1), Disease resistance protein (TIR-NBS-LRR class) family (.2) Potri.019G019710 [exp] 487 / 3e-169 AT5G36930 445 / 2e-144 Disease resistance protein (TIR-NBS-LRR class) family (.1), Disease resistance protein (TIR-NBS-LRR class) family (.2) Potri.013G037599 [exp] 503 / 3e-168 AT5G36930 627 / 0.0 Disease resistance protein (TIR-NBS-LRR class) family (.1), Disease resistance protein (TIR-NBS-LRR class) family (.2) Potri.T002568 [exp] 474 / 1e-164 AT5G36930 439 / 2e-142 Disease resistance protein (TIR-NBS-LRR class) family (.1), Disease resistance protein (TIR-NBS-LRR class) family (.2) Potri.T002428 [exp] 469 / 4e-162 AT5G36930 387 / 2e-122 Disease resistance protein (TIR-NBS-LRR class) family (.1), Disease resistance protein (TIR-NBS-LRR class) family (.2) Potri.019G046000 [exp] 471 / 7e-162 AT5G36930 496 / 1e-162 Disease resistance protein (TIR-NBS-LRR class) family (.1), Disease resistance protein (TIR-NBS-LRR class) family (.2) Potri.019G004599 [exp] 485 / 4e-161 AT5G36930 627 / 0.0 Disease resistance protein (TIR-NBS-LRR class) family (.1), Disease resistance protein (TIR-NBS-LRR class) family (.2) Potri.T002400 [exp] 478 / 1e-160 AT5G36930 658 / 0.0 Disease resistance protein (TIR-NBS-LRR class) family (.1), Disease resistance protein (TIR-NBS-LRR class) family (.2) Potri.T011750 [exp] 480 / 5e-159 AT5G36930 551 / 2e-176 Disease resistance protein (TIR-NBS-LRR class) family (.1), Disease resistance protein (TIR-NBS-LRR class) family (.2)
Flax homologues Show only best Show top 10	Locus ID BLAST score/e-value At best hit BLAST score/e-value TAIR10 short description Lus10005171 [exp] 343 / 1e-106 AT1G27170 576 / 0.0 transmembrane receptors;ATP binding (.1.2) Lus10032101 [exp] 321 / 3e-105 AT1G27170 270 / 6e-80 transmembrane receptors;ATP binding (.1.2) Lus10015453 [exp] 319 / 3e-104 AT1G27170 282 / 5e-84 transmembrane receptors;ATP binding (.1.2) Lus10039850 [exp] 337 / 4e-104 AT5G36930 573 / 0.0 Disease resistance protein (TIR-NBS-LRR class) family (.1), Disease resistance protein (TIR-NBS-LRR class) family (.2) Lus10018616 [exp] 337 / 1e-103 AT5G36930 578 / 0.0 Disease resistance protein (TIR-NBS-LRR class) family (.1), Disease resistance protein (TIR-NBS-LRR class) family (.2) Lus10041060 [exp] 323 / 4e-99 AT5G17680 641 / 0.0 disease resistance protein (TIR-NBS-LRR class), putative (.1) Lus10030839 [exp] 307 / 2e-93 AT4G12010 552 / 7e-176 Disease resistance protein (TIR-NBS-LRR class) family (.1) Lus10011741 [exp] 304 / 2e-92 AT5G36930 540 / 4e-172 Disease resistance protein (TIR-NBS-LRR class) family (.1), Disease resistance protein (TIR-NBS-LRR class) family (.2) Lus10010574 [exp] 291 / 7e-88 AT5G36930 397 / 4e-119 Disease resistance protein (TIR-NBS-LRR class) family (.1), Disease resistance protein (TIR-NBS-LRR class) family (.2) Lus10029628 [exp] 290 / 9e-87 AT1G27180 462 / 1e-138 disease resistance protein (TIR-NBS-LRR class), putative (.1)
PFAM info	Clan ID Clan name Pfam ID Pfam name Pfam description CL0023 [poplar] [flax] P-loop_NTPase PF00004 [poplar] [flax] AAA ATPase family associated with various cellular activities (AAA) CL0173 [poplar] [flax] STIR PF13676 [poplar] [flax] TIR_2 TIR domain
Representative CDS sequence Show only first row Show all	>Potri.003G084333.1 pacid=42786572 polypeptide=Potri.003G084333.1.p locus=Potri.003G084333 ID=Potri.003G084333.1.v4.1 annot-version=v4.1 ATGCATGGCAAATTAAATATGATAACCCAGCACTCCAACTTCGAAAGCGATACTCAATTTCAAAGTCAGCTGGTAAGGTTAAAAACCATAAGCAATTTCT CCATTAGACACCTACCTTCACCAACGAGTGCCCGTTCTATGGCTACCAGGAAAAATTCAGACCCATCTTTCTCTTCATCATCATCCGCACCACAATGGAA ATATGATGTTTTCTTGAGCTTTAGAGGCGAAGATACCAGGAAGAAGTTCACAGATCATCTTTATACTGCTTTAATCCATGCAGGAATCCATACTTTCAGG GACAATGATGAGCTTCCTAGAGGAGAAGACATTTCTTCTATAATCTCAAGACCAATTCAAGAATCAAGAATTGCTATTGTGGTCTTCTCAAAAGGCTATG CTTCCTCCACCTGGTGTCTCGGTGAACTTTCAGAGATTCTAGCGTGCAAAAGTGCCATTGGTCAACTTGCTGTCCCTATCTTCTATGACATCGATCCCTC CGATGTTAGAAAACAGACAGCAAGTTTTGCAGAAGCTTTTAAGAGACATGAAGAACGGTTTAAGGAAAATATTGAGATGGTCAACAAGTGGAGAAAAGTT CTCGTGGAGGCTGCAAATCTTTCTGGATGGCATCTCCAAGAAATGGAAAATGGACACGAAGCAAAGTTTATTGAAAAAATGGTTGAAGATGTTTTACATA AACTGAACTGCAAATACTTGACTGTTGCCTCATACCCAGTAGGTATTGATTCTCGAGTTAAGGACGTAGTTTCCATGTTAAGTGTTTATACAGATGATGT CCGAACAGTGGGCATATATGGGATGGGAGGTATAGGGAAGACAACCATAGCAAAGGCCGTATTTAACGAACTTTGCAATGAATTCGAAGGAAGTTGTTGT CTTTTGAATATCAAAGAAATCTCAGAACAACCCAGTGGTCTTGTTCAATTACAAGAACAACTCATTTCTGATCTCATACAATCAAAAACCTTTAAGATTA ATAATGTTGATAGAGGAAGCGCTCTGATCAAAGAAAGACTTTGTCACAAAAGAGTTCTTGTTGTTCTTGACGACTTGGATCAGTTGAAACAACTAGGAGC ACTGATGGGAGAGAGAAATTGGTTTGGCCTTGGAAGTAGAGTAATTATTACAACAAGAGACGAACATTTGCTAACTCAACTTCAAGTGCACAATAAATAT CTTGTTGAAGAATTGAATCATGACGAGTCCCTTCAGCTTTTCATTGCACATGCCTTCAAGGAGAATCGTCCAACAGAAGAATTTCTGGGGATTTCTAAAG GTGTAGTTCAGTATGTTGGAGGACTTCCACTGGCTCTTGAAGTTTTGGGTTCTTATTTGTGCAAAAGAAGCATAGGTGAATGGAGAAGTGCTGTAAGAAA TTAA
AA sequence Show only first row Show all	>Potri.003G084333.1 pacid=42786572 polypeptide=Potri.003G084333.1.p locus=Potri.003G084333 ID=Potri.003G084333.1.v4.1 annot-version=v4.1 MHGKLNMITQHSNFESDTQFQSQLVRLKTISNFSIRHLPSPTSARSMATRKNSDPSFSSSSSAPQWKYDVFLSFRGEDTRKKFTDHLYTALIHAGIHTFR DNDELPRGEDISSIISRPIQESRIAIVVFSKGYASSTWCLGELSEILACKSAIGQLAVPIFYDIDPSDVRKQTASFAEAFKRHEERFKENIEMVNKWRKV LVEAANLSGWHLQEMENGHEAKFIEKMVEDVLHKLNCKYLTVASYPVGIDSRVKDVVSMLSVYTDDVRTVGIYGMGGIGKTTIAKAVFNELCNEFEGSCC LLNIKEISEQPSGLVQLQEQLISDLIQSKTFKINNVDRGSALIKERLCHKRVLVVLDDLDQLKQLGALMGERNWFGLGSRVIITTRDEHLLTQLQVHNKY LVEELNHDESLQLFIAHAFKENRPTEEFLGISKGVVQYVGGLPLALEVLGSYLCKRSIGEWRSAVRN

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DESeq2's median of ratios [POPLAR]

Mapped by: StringTie Salmon Order by: Tissue Experiment Show only core collection Show again Show schematic diagram

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Coexpressed genes

Compare expression of checked genes Schematic diagram [FLAX] Schematic diagram [POPLAR]

*If you select 4 or less genes and then press "compare expression", expression will be shown as a graph. If you select more than 4 genes, expresion will be shown as a heat map.
*Color represents relative expression level among samples for each gene.

At best	At TF class	At alias	At description		Locus	MR	r	Symbol	NWA:WT	NWB:WT	NWA:OE-ARK2	NWB:OE-ARK2	NWA:miRNA-ARK2	NWB:miRNA-ARK2	NW 0hr	WT H20	WT-NW	TUA1dEY NW	TUA1dEY+TUB15 NW	TUA1dY+TUB9 NW	Pde NW	NWA:WT GA	NWBWT GA	TW:WT	TW:WT GA	NWA:OE-ARK2 GA	NWB:OE-ARK2 GA	TW:OE-ARK2	TW:OE-ARK2 GA	NWA:miRNA-ARK2 GA	NWB:miRNA-ARK2 GA	TW:miRNA-ARK2	TW:miRNA-ARK2 GA	TW 2hr	TW 8hr	TW 24hr	TW 48hr	TW 96hr	TW 336hr	WT ACC	35S::etr1-1 H20	35S::etr1-1 ACC	LMX5::etr1-1 H20	LMX5::etr1-1 ACC	WT-TW	TUA1dEY TW	TUA1dEY+TUB15 TW	TUA1dY+TUB9 TW	Pde TW	OW:WT	OW:WT GA	OW:OE-ARK2	OW:OE-ARK2 GA	OW:miRNA-ARK2	OW:miRNA-ARK2 GA	OW 2hr	OW 8hr	OW 24hr	OW 48hr	OW 96hr	OW 336hr	Root CTR	Root LongCold	Root LongDrougt	Root LongHeat	Root LongSalt	Root ShortCold	Root ShortDrougt	Root ShortHeat	Root ShortSalt	Ptr root	Leaf CTR	Leaf LongCold	Leaf LongDrougt	Leaf LongHeat	Leaf LongSalt	Leaf ShortCold	Leaf ShortDrougt	Leaf ShortHeat	Leaf ShortSalt	Ptr leaf	Stem CTR	Stem LongCold	Stem LongDrougt	Stem LongHeat	Stem LongSalt	Stem ShortCold	Stem ShortDrougt	Stem ShortHeat	Stem ShortSalt	Ptr shoot	Ptr xylem	Ptr phloem	Ptr fiber	Ptr vessel	Ptr fiber vessel ray
AT5G36930			Disease resistance protein (TI...		Potri.003G084333 [exp]	0	1
AT3G57230	MADS	AGL16	AGAMOUS-like 16 (.1.2)		Potri.005G150501 [exp]	9.05	0.7958
AT3G14470			NB-ARC domain-containing disea...		Potri.001G022800 [exp]	9.48	0.7917
AT5G14420		RGLG2	RING domain ligase2 (.1.2.3.4)		Potri.006G002600 [exp]	13.67	0.8029
AT1G65810			P-loop containing nucleoside t...		Potri.008G143450 [exp]	22.24	0.7839
AT3G61220		SDR1	short-chain dehydrogenase/redu...		Potri.002G156300 [exp]	25.37	0.7771
AT5G36130			Cytochrome P450 superfamily pr...		Potri.003G222001 [exp]	25.51	0.7604
AT3G11570		TBL8	TRICHOME BIREFRINGENCE-LIKE 8 ...		Potri.006G208251 [exp]	31.43	0.7609
					Potri.002G075850 [exp]	33.67	0.7755
AT5G19875			unknown protein		Potri.001G009200 [exp]	37.14	0.7777
AT5G24430			Calcium-dependent protein kina...		Potri.012G023300 [exp]	40.00	0.7735	CRK4

Compare expression of checked genes

Potri.003G084333 coexpression network

*The number of genes in the network is adjusted within 50 genes.
*Gene name represents symbol(s) of closest Arabidopsis gene if symbol(s) for the gene itself doesn't exist.
*Circle diameter represents the number of connection with other genes within this network.
*Color for gene name represents subnetwork based on the result of network clustering.