Plant FIBer expression Database

External link	JGI Phytozome v13 [genome browser] Popgenie AspWood
Symbol	LON.2
Arabidopsis homologues Show only best Show top 10	Locus ID BLAST score/e-value TF class Alias TAIR10 short description AT5G47040 1461 / 0 LON2 lon protease 2 (.1) AT5G26860 471 / 9e-152 LON1, LON_ARA_ARA lon protease 1 (.1) AT3G05790 443 / 4e-141 LON4 lon protease 4 (.1) AT3G05780 427 / 2e-135 LON3 lon protease 3 (.1) AT5G17730 49 / 1e-05 P-loop containing nucleoside triphosphate hydrolases superfamily protein (.1) AT4G23940 44 / 0.0005 FtsH extracellular protease family (.1)
Paralogs Show only best Show top 10	Gene ID BLAST score/e-value At best hit BLAST score/e-value TAIR10 short description Potri.001G148400 [exp] 1618 / 0 AT5G47040 1460 / 0.0 lon protease 2 (.1) Potri.005G017600 [exp] 332 / 5e-99 AT5G26860 1428 / 0.0 lon protease 1 (.1) Potri.013G008900 [exp] 330 / 3e-98 AT5G26860 1467 / 0.0 lon protease 1 (.1)
Flax homologues Show only best Show top 10	Locus ID BLAST score/e-value At best hit BLAST score/e-value TAIR10 short description Lus10003009 [exp] 1465 / 0 AT5G47040 1420 / 0.0 lon protease 2 (.1) Lus10011038 [exp] 1461 / 0 AT5G47040 1413 / 0.0 lon protease 2 (.1) Lus10040131 [exp] 1431 / 0 AT5G47040 1400 / 0.0 lon protease 2 (.1) Lus10001084 [exp] 1009 / 0 AT5G47040 994 / 0.0 lon protease 2 (.1) Lus10031414 [exp] 472 / 9e-152 AT5G26860 1402 / 0.0 lon protease 1 (.1) Lus10001083 [exp] 400 / 3e-134 AT5G47040 374 / 9e-125 lon protease 2 (.1) Lus10010919 [exp] 386 / 6e-120 AT5G26860 1275 / 0.0 lon protease 1 (.1) Lus10032404 [exp] 47 / 0.0001 AT4G23940 1267 / 0.0 FtsH extracellular protease family (.1) Lus10023066 [exp] 45 / 0.0003 AT4G23940 1246 / 0.0 FtsH extracellular protease family (.1)
PFAM info	Clan ID Clan name Pfam ID Pfam name Pfam description CL0023 [poplar] [flax] P-loop_NTPase PF00004 [poplar] [flax] AAA ATPase family associated with various cellular activities (AAA) CL0178 [poplar] [flax] PUA PF02190 [poplar] [flax] LON_substr_bdg ATP-dependent protease La (LON) substrate-binding domain CL0329 [poplar] [flax] S5 PF13541 [poplar] [flax] ChlI Subunit ChlI of Mg-chelatase
Representative CDS sequence Show only first row Show all	>Potri.003G086000.1 pacid=42786550 polypeptide=Potri.003G086000.1.p locus=Potri.003G086000 ID=Potri.003G086000.1.v4.1 annot-version=v4.1 ATGGCTGAATCGGTGGAGTTACCAAGTCGGTTAGCGATCCTTCCGTTTAGAAACAAGGTTCTTTTACCTGGCGCCATAATTCGCATTCGCTGTACTTCTC CCAGCAGTGTGAAATTGGTAGAGCAAGAGCTTTGGCAGAGAGAAGAGAAGGGGTTGATTGGTATTTTGCCAGTCAGGGATGCTGCTGCTGCTTCCTCGTC GGAGACAGCATCTGTAGGCCCAACGTTATCCCAAGGTGTTGGTAGTGATTCCAGCGAGAGAAGCTCGAAAACTCAAGCCAGTACCTCGTCGGATAATGTC AAGCTTGATGGGAAACACCAACAGGAAGTTTTTCACTGGCATAATAGGGGAGTGGCGGCTCGTGCTTTGCATCTTTCTAGAGGAGTGGAGAAACCTAGTG GGAGGGTGACGTACATAGTTGTTCTTGAAGGCTTGTGCAGATTCAACCTCAATGAACTTATTACGAGAGGGACTTATTATACTGCACGGATATCTCCACT TGAAATGACAAATGCTGAGCTGGAGCAAGTGGACCAAGATCCTGATTTTATAGCACTGTCTCGCCAGTTCAAAGCAACTGCAATGGAGCTGATTTCTGTT CTTGAGCAGAAACAAAAAACTGGTGGGAGGACAAAAGTCCTTCTGGAGACAGTTCCTGTTCACAAATTAGCAGATATATTTGTTGCTAGCTTCGAGATAA GTTTTGAAGAGCAGCTATCTATGCTGGATTCAGTTGATCTAAAAGTAAGACTGTCAAAAGCTACTGAGCTGGTTGATCGACATTTACAGTCAATACGTGT GGCAGAGAAGATCACGCAAAAGGTTGAAGGACAATTGTCAAAATCACAGAAAGAGTTCCTTCTGCGTCAGCAGATGAGGGCTATAAAAGAGGAGCTTGGT GACAACGATGATGATGAGGATGATGTAGCTGCCCTAGAAAGGAAGATGCAAAGTGCAGGAATGCCTTCAAATATCTGGAAGCATGCCCAAAGGGAGTTGA GGAGGCTTAAGAAGATGCAACCTCAGCAACCTGGATATAATAGTTCACGCGTTTACTTGGAGCTTCTTGCTGACCTGCCCTGGCAGACAGTGAGTGAAGA ACATGAATTGGATCTAAAAGCTGCAAAAGAACGTCTTGATAATGACCACTACGGTCTAGTCAAAATCAAGCAACGTATTATTGAATATCTAGCTGTTCGC AAGCTTAAACCAGATGCAAGAGGTCCAGTTTTGTGCTTTGTTGGCCCACCAGGTGTTGGAAAGACATCTCTGGCTTCGTCTATTGCTGCTGCCTTGGGCA GAAAATTTGTTCGTATATCCCTTGGTGGCATTAAGGATGAGGCTGATATTAGAGGGCACAGGAGAACATACATCGGAAGCATGCCGGGGCGTCTTATAGA TGGAATAAAGAGAGTGGGTGTTTGCAATCCTGTGATGCTGCTGGATGAGATTGACAAGACAGGTTCTGATGTGCGTGGGGATCCAGCTGCAGCTCTGCTG GAGGTTCTTGATCCTGAACAGAATAACACATTCAACGATCACTATCTGAATGTTCCATTTGACCTTTCAAAGGTGATTTTTGTGACAACTGCAAATAGGA TGCAGCCTATTCCTCCACCGCTCTTAGACAGGATGGAAGTCATTGAGCTGCCTGGATACACACCTGAAGAAAAGCTTAGAATAGCAATGCAGTATTTGAT TCCAAGAGTTTTGGATCAACACGGGCTGAGCTCTGAGTTCCTTCAAATTCCAGAGGGTATGGTGAAACTTGTCATTCAGAGATACACAAGGGAGGCAGGT GTACGCAATTTGGAGAGGAACTTGGCTGCCTTGGCTCGTGCTGCAGCTGTGAGAGTTGCAGAGCAAGAACAAGCTGTCCCGTTGAGCAAAGATATGCATC AGCTTGCTTCACCATTGCTGGATAACAGACTCGCTGAGGGAGCTGATCTGGAAATGGAAGTTATACCAATGAATGAAAACAGTCATGAGATATCAAACAC ATTCAGCATCGCCTCACCTTTGGTTGTAGATGAGCCTATGCTGGAGAAAGTACTTGGGCCTCCACGTTTTGATGACAAAGAAGCTGCAGAGCGTGTTGCA TCCCCAGGGATATCAGTTGGGCTTGTCTGGACTGCCTTTGGTGGAGAGGTTCAGTTTGTGGAGGCTACAGCAACGGCTGGAAAGGGTGAATTACATCTTA CTGGACAACTTGGTGATGTAATTAAAGAATCAGCACAAATAGCACTGACATGGGTACGAGCGAAGGCAACTGATCTTAAGTTGGCAGCTGCTAATGAAAC CAATTTCCTTAAGGGTCGAGATGTTCATATACATTTCCCTGCTGGTGCGGTACCGAAGGATGGACCCTCAGCTGGTGTGACATTGGTAACAGCTCTGGTT TCACTGTTTAGTCAGAAAAGAGTAAGAGCAGATACAGCTATGACTGGGGAGATGACTTTGAGGGGCCTTGTACTTCCTGTTGGCGGTATCAAGGATAAGA TATTGGCAGCACACCGCTATGGCATCAAGAGAGTGATTCTGCCAGAGAGAAATTTGAAGGATTTGGTTGAAGTACCGGCAGCAGTGCTTGGCAGTCTTGA GATTTTACCAGCTAAGCAAATGGAAGACGTATTGGAGCAAGCATTTGAAGGTGGTTGTCCGTGGAGACAACACTCAAAATTATGA
AA sequence Show only first row Show all	>Potri.003G086000.1 pacid=42786550 polypeptide=Potri.003G086000.1.p locus=Potri.003G086000 ID=Potri.003G086000.1.v4.1 annot-version=v4.1 MAESVELPSRLAILPFRNKVLLPGAIIRIRCTSPSSVKLVEQELWQREEKGLIGILPVRDAAAASSSETASVGPTLSQGVGSDSSERSSKTQASTSSDNV KLDGKHQQEVFHWHNRGVAARALHLSRGVEKPSGRVTYIVVLEGLCRFNLNELITRGTYYTARISPLEMTNAELEQVDQDPDFIALSRQFKATAMELISV LEQKQKTGGRTKVLLETVPVHKLADIFVASFEISFEEQLSMLDSVDLKVRLSKATELVDRHLQSIRVAEKITQKVEGQLSKSQKEFLLRQQMRAIKEELG DNDDDEDDVAALERKMQSAGMPSNIWKHAQRELRRLKKMQPQQPGYNSSRVYLELLADLPWQTVSEEHELDLKAAKERLDNDHYGLVKIKQRIIEYLAVR KLKPDARGPVLCFVGPPGVGKTSLASSIAAALGRKFVRISLGGIKDEADIRGHRRTYIGSMPGRLIDGIKRVGVCNPVMLLDEIDKTGSDVRGDPAAALL EVLDPEQNNTFNDHYLNVPFDLSKVIFVTTANRMQPIPPPLLDRMEVIELPGYTPEEKLRIAMQYLIPRVLDQHGLSSEFLQIPEGMVKLVIQRYTREAG VRNLERNLAALARAAAVRVAEQEQAVPLSKDMHQLASPLLDNRLAEGADLEMEVIPMNENSHEISNTFSIASPLVVDEPMLEKVLGPPRFDDKEAAERVA SPGISVGLVWTAFGGEVQFVEATATAGKGELHLTGQLGDVIKESAQIALTWVRAKATDLKLAAANETNFLKGRDVHIHFPAGAVPKDGPSAGVTLVTALV SLFSQKRVRADTAMTGEMTLRGLVLPVGGIKDKILAAHRYGIKRVILPERNLKDLVEVPAAVLGSLEILPAKQMEDVLEQAFEGGCPWRQHSKL

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DESeq2's median of ratios [POPLAR]

Mapped by: StringTie Salmon Order by: Tissue Experiment Show only core collection Show again Show schematic diagram

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Coexpressed genes

Compare expression of checked genes Schematic diagram [FLAX] Schematic diagram [POPLAR]

*If you select 4 or less genes and then press "compare expression", expression will be shown as a graph. If you select more than 4 genes, expresion will be shown as a heat map.
*Color represents relative expression level among samples for each gene.

At best	At TF class	At alias	At description		Locus	MR	r	Symbol	NWA:WT	NWB:WT	NWA:OE-ARK2	NWB:OE-ARK2	NWA:miRNA-ARK2	NWB:miRNA-ARK2	NW 0hr	WT H20	WT-NW	TUA1dEY NW	TUA1dEY+TUB15 NW	TUA1dY+TUB9 NW	Pde NW	NWA:WT GA	NWBWT GA	TW:WT	TW:WT GA	NWA:OE-ARK2 GA	NWB:OE-ARK2 GA	TW:OE-ARK2	TW:OE-ARK2 GA	NWA:miRNA-ARK2 GA	NWB:miRNA-ARK2 GA	TW:miRNA-ARK2	TW:miRNA-ARK2 GA	TW 2hr	TW 8hr	TW 24hr	TW 48hr	TW 96hr	TW 336hr	WT ACC	35S::etr1-1 H20	35S::etr1-1 ACC	LMX5::etr1-1 H20	LMX5::etr1-1 ACC	WT-TW	TUA1dEY TW	TUA1dEY+TUB15 TW	TUA1dY+TUB9 TW	Pde TW	OW:WT	OW:WT GA	OW:OE-ARK2	OW:OE-ARK2 GA	OW:miRNA-ARK2	OW:miRNA-ARK2 GA	OW 2hr	OW 8hr	OW 24hr	OW 48hr	OW 96hr	OW 336hr	Root CTR	Root LongCold	Root LongDrougt	Root LongHeat	Root LongSalt	Root ShortCold	Root ShortDrougt	Root ShortHeat	Root ShortSalt	Ptr root	Leaf CTR	Leaf LongCold	Leaf LongDrougt	Leaf LongHeat	Leaf LongSalt	Leaf ShortCold	Leaf ShortDrougt	Leaf ShortHeat	Leaf ShortSalt	Ptr leaf	Stem CTR	Stem LongCold	Stem LongDrougt	Stem LongHeat	Stem LongSalt	Stem ShortCold	Stem ShortDrougt	Stem ShortHeat	Stem ShortSalt	Ptr shoot	Ptr xylem	Ptr phloem	Ptr fiber	Ptr vessel	Ptr fiber vessel ray
AT5G47040		LON2	lon protease 2 (.1)		Potri.003G086000 [exp]	0	1	LON.2
AT3G56680			Single-stranded nucleic acid b...		Potri.008G021900 [exp]	1.00	0.9046
AT3G26040			HXXXD-type acyl-transferase fa...		Potri.004G017600 [exp]	6.70	0.8553
AT1G17440		CKH1, TAF12b, E...	TBP-ASSOCIATED FACTOR 12B, ENH...		Potri.001G169900 [exp]	6.92	0.8813
AT3G01990		ACR6	ACT domain repeat 6 (.1)		Potri.001G327000 [exp]	6.92	0.8844
AT5G52530			dentin sialophosphoprotein-rel...		Potri.017G142600 [exp]	8.12	0.8584
AT3G15355		UBC25 ,PFU1	PHO2 FAMILY UBIQUITIN CONJUGAT...		Potri.011G118800 [exp]	16.24	0.8428
AT5G58870		FTSH9	FTSH protease 9 (.1)		Potri.001G249100 [exp]	16.79	0.8878
AT4G30080	ARF	ARF16	auxin response factor 16 (.1)		Potri.006G127500 [exp]	17.49	0.8244
AT2G30500			Kinase interacting (KIP1-like)...		Potri.019G131000 [exp]	22.64	0.8444
AT3G57990			unknown protein		Potri.016G046900 [exp]	22.91	0.8582

Compare expression of checked genes

Potri.003G086000 coexpression network

*The number of genes in the network is adjusted within 50 genes.
*Gene name represents symbol(s) of closest Arabidopsis gene if symbol(s) for the gene itself doesn't exist.
*Circle diameter represents the number of connection with other genes within this network.
*Color for gene name represents subnetwork based on the result of network clustering.