Plant FIBer expression Database

External link	JGI Phytozome v13 [genome browser] Popgenie AspWood
Symbol
Arabidopsis homologues Show only best Show top 10	Locus ID BLAST score/e-value TF class Alias TAIR10 short description AT5G45580 240 / 4e-79 GARP Homeodomain-like superfamily protein (.1) AT3G24120 181 / 2e-55 GARP Homeodomain-like superfamily protein (.1.2) AT4G13640 179 / 1e-54 GARP UNE16 unfertilized embryo sac 16, Homeodomain-like superfamily protein (.1.2) AT1G79430 166 / 5e-49 GARP WDY, APL WOODY, ALTERED PHLOEM DEVELOPMENT, Homeodomain-like superfamily protein (.1.2) AT5G18240 166 / 2e-48 GARP MYR1, ATMYR1 ARABIDOPSIS MYB-RELATED PROTEIN 1, myb-related protein 1 (.1.2.3.4.5) AT3G04030 159 / 7e-46 GARP Homeodomain-like superfamily protein (.1.2.3) AT3G12730 146 / 7e-43 GARP Homeodomain-like superfamily protein (.1) AT1G69580 146 / 8e-42 GARP Homeodomain-like superfamily protein (.1.2) AT2G01060 140 / 9e-40 GARP myb-like HTH transcriptional regulator family protein (.1.2) AT3G13040 129 / 2e-34 GARP myb-like HTH transcriptional regulator family protein (.1.2)
Paralogs Show only best Show top 10	Gene ID BLAST score/e-value At best hit BLAST score/e-value TAIR10 short description Potri.001G133400 [exp] 484 / 4e-175 AT5G45580 220 / 2e-71 Homeodomain-like superfamily protein (.1) Potri.001G314800 [exp] 181 / 2e-55 AT4G13640 345 / 2e-119 unfertilized embryo sac 16, Homeodomain-like superfamily protein (.1.2) Potri.017G054800 [exp] 179 / 1e-54 AT4G13640 338 / 6e-117 unfertilized embryo sac 16, Homeodomain-like superfamily protein (.1.2) Potri.013G060200 [exp] 164 / 1e-47 AT3G04030 462 / 3e-162 Homeodomain-like superfamily protein (.1.2.3) Potri.019G032700 [exp] 162 / 5e-47 AT3G04030 449 / 2e-157 Homeodomain-like superfamily protein (.1.2.3) Potri.008G081800 [exp] 158 / 4e-46 AT1G79430 335 / 6e-114 WOODY, ALTERED PHLOEM DEVELOPMENT, Homeodomain-like superfamily protein (.1.2) Potri.010G174100 [exp] 158 / 4e-46 AT1G79430 356 / 4e-122 WOODY, ALTERED PHLOEM DEVELOPMENT, Homeodomain-like superfamily protein (.1.2) Potri.011G023600 [exp] 153 / 3e-45 AT1G79430 180 / 1e-54 WOODY, ALTERED PHLOEM DEVELOPMENT, Homeodomain-like superfamily protein (.1.2) Potri.008G087600 [exp] 152 / 5e-44 AT1G69580 276 / 2e-91 Homeodomain-like superfamily protein (.1.2)
Flax homologues Show only best Show top 10	Locus ID BLAST score/e-value At best hit BLAST score/e-value TAIR10 short description Lus10010404 [exp] 231 / 3e-75 AT5G45580 216 / 9e-70 Homeodomain-like superfamily protein (.1) Lus10012142 [exp] 227 / 2e-73 AT5G45580 215 / 2e-69 Homeodomain-like superfamily protein (.1) Lus10016676 [exp] 179 / 1e-54 AT4G13640 380 / 2e-133 unfertilized embryo sac 16, Homeodomain-like superfamily protein (.1.2) Lus10007132 [exp] 179 / 1e-54 AT4G13640 390 / 3e-137 unfertilized embryo sac 16, Homeodomain-like superfamily protein (.1.2) Lus10001844 [exp] 165 / 1e-47 AT1G79430 286 / 3e-93 WOODY, ALTERED PHLOEM DEVELOPMENT, Homeodomain-like superfamily protein (.1.2) Lus10001754 [exp] 164 / 2e-47 AT1G79430 292 / 2e-95 WOODY, ALTERED PHLOEM DEVELOPMENT, Homeodomain-like superfamily protein (.1.2) Lus10037169 [exp] 159 / 6e-47 AT1G69580 252 / 9e-83 Homeodomain-like superfamily protein (.1.2) Lus10036758 [exp] 157 / 5e-46 AT1G69580 258 / 9e-85 Homeodomain-like superfamily protein (.1.2) Lus10002629 [exp] 159 / 6e-46 AT3G04030 440 / 9e-154 Homeodomain-like superfamily protein (.1.2.3) Lus10020264 [exp] 159 / 6e-46 AT3G04030 441 / 4e-154 Homeodomain-like superfamily protein (.1.2.3)
PFAM info	Clan ID Clan name Pfam ID Pfam name Pfam description CL0123 [poplar] [flax] HTH PF00249 [poplar] [flax] Myb_DNA-binding Myb-like DNA-binding domain CL0123 [poplar] [flax] PF14379 [poplar] [flax] Myb_CC_LHEQLE MYB-CC type transfactor, LHEQLE motif
Representative CDS sequence Show only first row Show all	>Potri.003G100100.5 pacid=42785044 polypeptide=Potri.003G100100.5.p locus=Potri.003G100100 ID=Potri.003G100100.5.v4.1 annot-version=v4.1 ATGGAGAAAACAACATTTGGTGGTGGAGGAGGGAGTTATCCATACGAGAACGGGGTGGTGATGATGACAAGAGACCCAAGGCCAAGACTTAGATGGACTG CTGATCTTCATGATCGTTTTGTTGATGCTGTCACCAAACTTGGTGGCCCTGATAAGGCAACTCCAAAGTCAGTGTTGAGGTTAATGGGATTGAAGGGTTT GACATTGTACCATTTAAAGAGTCATTTACAGAAATACAGACTTGGGCAGCAGGCTCGAAGACAGAACAATACAGAACAAAGCAAAGAGAGCAGAGGAGCT TCATATGTAAACTTCAGTAAGGGCTCCTCAGGGACAAGCACCAGTTCACCAAGAATCGATGAAGAACAAGGAGAAATCTCAGTTGCAGAGGCATTAAATT GTCAGATTGAAGTACAGAAAACATTACAAGAAAAGCTTGAGGTACAGAAGAAGCTGCAGATGAGAATAGAAGCTCAAGGGAAGTACTTGCAGGCCATACT GGAGAAAGCTCAGAAGAGCCTCTCACAAAACTTGAATGACGACAGCAATGGAAAATTAAAAGCCACAAGAGCTCATTTAACAGGCTTCAATTCCGCTGTT TATAGTCTCATGGAGAACTTGAATGCAGAAGATAGGAAACCAAGCATCACTGATTTGAAAGGTATCAATATGAAGGAAAATGGTCCGGCTATGCATATTC AGAGAGAGGGACAGACACAGGAAACCAAAGATGTTAAGCACCACCTTCAAGGGGATTCCATACATTTTGACTTAAACACCAAAGGTAACTATGATTTTGT CTCTGCAAATGGATCTGAATTGGAACTCAAAATGCTTTCATATAGGAGATAA
AA sequence Show only first row Show all	>Potri.003G100100.5 pacid=42785044 polypeptide=Potri.003G100100.5.p locus=Potri.003G100100 ID=Potri.003G100100.5.v4.1 annot-version=v4.1 MEKTTFGGGGGSYPYENGVVMMTRDPRPRLRWTADLHDRFVDAVTKLGGPDKATPKSVLRLMGLKGLTLYHLKSHLQKYRLGQQARRQNNTEQSKESRGA SYVNFSKGSSGTSTSSPRIDEEQGEISVAEALNCQIEVQKTLQEKLEVQKKLQMRIEAQGKYLQAILEKAQKSLSQNLNDDSNGKLKATRAHLTGFNSAV YSLMENLNAEDRKPSITDLKGINMKENGPAMHIQREGQTQETKDVKHHLQGDSIHFDLNTKGNYDFVSANGSELELKMLSYRR

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DESeq2's median of ratios [POPLAR]

Mapped by: StringTie Salmon Order by: Tissue Experiment Show only core collection Show again Show schematic diagram

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Coexpressed genes

Compare expression of checked genes Schematic diagram [FLAX] Schematic diagram [POPLAR]

*If you select 4 or less genes and then press "compare expression", expression will be shown as a graph. If you select more than 4 genes, expresion will be shown as a heat map.
*Color represents relative expression level among samples for each gene.

At best	At TF class	At alias	At description		Locus	MR	r	Symbol	NWA:WT	NWB:WT	NWA:OE-ARK2	NWB:OE-ARK2	NWA:miRNA-ARK2	NWB:miRNA-ARK2	NW 0hr	WT H20	WT-NW	TUA1dEY NW	TUA1dEY+TUB15 NW	TUA1dY+TUB9 NW	Pde NW	NWA:WT GA	NWBWT GA	TW:WT	TW:WT GA	NWA:OE-ARK2 GA	NWB:OE-ARK2 GA	TW:OE-ARK2	TW:OE-ARK2 GA	NWA:miRNA-ARK2 GA	NWB:miRNA-ARK2 GA	TW:miRNA-ARK2	TW:miRNA-ARK2 GA	TW 2hr	TW 8hr	TW 24hr	TW 48hr	TW 96hr	TW 336hr	WT ACC	35S::etr1-1 H20	35S::etr1-1 ACC	LMX5::etr1-1 H20	LMX5::etr1-1 ACC	WT-TW	TUA1dEY TW	TUA1dEY+TUB15 TW	TUA1dY+TUB9 TW	Pde TW	OW:WT	OW:WT GA	OW:OE-ARK2	OW:OE-ARK2 GA	OW:miRNA-ARK2	OW:miRNA-ARK2 GA	OW 2hr	OW 8hr	OW 24hr	OW 48hr	OW 96hr	OW 336hr	Root CTR	Root LongCold	Root LongDrougt	Root LongHeat	Root LongSalt	Root ShortCold	Root ShortDrougt	Root ShortHeat	Root ShortSalt	Ptr root	Leaf CTR	Leaf LongCold	Leaf LongDrougt	Leaf LongHeat	Leaf LongSalt	Leaf ShortCold	Leaf ShortDrougt	Leaf ShortHeat	Leaf ShortSalt	Ptr leaf	Stem CTR	Stem LongCold	Stem LongDrougt	Stem LongHeat	Stem LongSalt	Stem ShortCold	Stem ShortDrougt	Stem ShortHeat	Stem ShortSalt	Ptr shoot	Ptr xylem	Ptr phloem	Ptr fiber	Ptr vessel	Ptr fiber vessel ray
AT5G45580	GARP		Homeodomain-like superfamily p...		Potri.003G100100 [exp]	0	1
					Potri.018G145526 [exp]	7.93	0.7129
					Potri.001G360950 [exp]	13.11	0.5122
AT2G26695			Ran BP2/NZF zinc finger-like s...		Potri.018G066900 [exp]	14.83	0.6568
AT5G45670			GDSL-like Lipase/Acylhydrolase...		Potri.011G076500 [exp]	18.54	0.6559
AT1G21695			hydroxyproline-rich glycoprote...		Potri.002G080200 [exp]	18.84	0.6538
					Potri.001G073166 [exp]	25.61	0.6534
AT2G01210			Leucine-rich repeat protein ki...		Potri.004G095700 [exp]	26.83	0.6321
AT1G75080	BZR	BZR1	BRASSINAZOLE-RESISTANT 1, Bras...		Potri.014G041600 [exp]	31.01	0.5765	Pt-BES1.1
AT1G22360		ATUGT85A2, AT2	UDP-glucosyl transferase 85A2 ...		Potri.017G052100 [exp]	37.09	0.5700
AT1G47960		ATC/VIF1, C/VIF...	cell wall / vacuolar inhibitor...		Potri.001G288500 [exp]	43.88	0.6224

Compare expression of checked genes

Potri.003G100100 coexpression network

*The number of genes in the network is adjusted within 50 genes.
*Gene name represents symbol(s) of closest Arabidopsis gene if symbol(s) for the gene itself doesn't exist.
*Circle diameter represents the number of connection with other genes within this network.
*Color for gene name represents subnetwork based on the result of network clustering.