Plant FIBer expression Database

External link	JGI Phytozome v13 [genome browser] Popgenie AspWood
Symbol
Arabidopsis homologues Show only best Show top 10	Locus ID BLAST score/e-value TF class Alias TAIR10 short description AT4G19050 363 / 4e-106 NB-ARC domain-containing disease resistance protein (.1) AT5G45510 294 / 3e-82 Leucine-rich repeat (LRR) family protein (.1), Leucine-rich repeat (LRR) family protein (.2) AT3G44670 73 / 1e-12 Disease resistance protein (TIR-NBS-LRR class) family (.1), Disease resistance protein (TIR-NBS-LRR class) family (.2) AT4G16890 72 / 3e-12 BAL, SNC1 SUPPRESSOR OF NPR1-1, CONSTITUTIVE 1, BALL, disease resistance protein (TIR-NBS-LRR class), putative (.1) AT3G44630 71 / 7e-12 Disease resistance protein (TIR-NBS-LRR class) family (.1), Disease resistance protein (TIR-NBS-LRR class) family (.2), Disease resistance protein (TIR-NBS-LRR class) family (.3) AT1G69550 69 / 2e-11 disease resistance protein (TIR-NBS-LRR class) (.1) AT4G27220 69 / 2e-11 NB-ARC domain-containing disease resistance protein (.1) AT3G25510 67 / 7e-11 disease resistance protein (TIR-NBS-LRR class), putative (.1) AT4G27190 61 / 6e-09 NB-ARC domain-containing disease resistance protein (.1) AT3G44400 59 / 2e-08 Disease resistance protein (TIR-NBS-LRR class) family (.1), Disease resistance protein (TIR-NBS-LRR class) family (.2)
Paralogs Show only best Show top 10	Gene ID BLAST score/e-value At best hit BLAST score/e-value TAIR10 short description Potri.T023966 [exp] 82 / 2e-15 AT4G27220 307 / 2e-89 NB-ARC domain-containing disease resistance protein (.1) Potri.011G127300 [exp] 75 / 3e-13 AT4G27220 272 / 1e-77 NB-ARC domain-containing disease resistance protein (.1) Potri.005G030700 [exp] 74 / 7e-13 AT1G69550 602 / 0.0 disease resistance protein (TIR-NBS-LRR class) (.1) Potri.T045300 [exp] 73 / 1e-12 AT4G27220 279 / 1e-79 NB-ARC domain-containing disease resistance protein (.1) Potri.019G070700 [exp] 72 / 4e-12 AT5G17680 722 / 0.0 disease resistance protein (TIR-NBS-LRR class), putative (.1) Potri.005G030318 [exp] 71 / 6e-12 AT1G69550 673 / 0.0 disease resistance protein (TIR-NBS-LRR class) (.1) Potri.019G113701 [exp] 70 / 1e-11 AT5G17680 596 / 0.0 disease resistance protein (TIR-NBS-LRR class), putative (.1) Potri.018G137900 [exp] 69 / 2e-11 AT4G27220 354 / 4e-106 NB-ARC domain-containing disease resistance protein (.1) Potri.018G136700 [exp] 66 / 2e-10 AT4G27190 323 / 4e-94 NB-ARC domain-containing disease resistance protein (.1)
Flax homologues Show only best Show top 10	Locus ID BLAST score/e-value At best hit BLAST score/e-value TAIR10 short description Lus10029628 [exp] 91 / 5e-18 AT1G27180 462 / 1e-138 disease resistance protein (TIR-NBS-LRR class), putative (.1) Lus10018616 [exp] 74 / 8e-13 AT5G36930 578 / 0.0 Disease resistance protein (TIR-NBS-LRR class) family (.1), Disease resistance protein (TIR-NBS-LRR class) family (.2) Lus10004257 [exp] 70 / 1e-11 AT5G36930 446 / 7e-136 Disease resistance protein (TIR-NBS-LRR class) family (.1), Disease resistance protein (TIR-NBS-LRR class) family (.2) Lus10039850 [exp] 65 / 4e-10 AT5G36930 573 / 0.0 Disease resistance protein (TIR-NBS-LRR class) family (.1), Disease resistance protein (TIR-NBS-LRR class) family (.2) Lus10042165 [exp] 63 / 2e-09 AT5G36930 326 / 9e-94 Disease resistance protein (TIR-NBS-LRR class) family (.1), Disease resistance protein (TIR-NBS-LRR class) family (.2) Lus10005373 [exp] 62 / 3e-09 AT5G36930 404 / 8e-121 Disease resistance protein (TIR-NBS-LRR class) family (.1), Disease resistance protein (TIR-NBS-LRR class) family (.2) Lus10001366 [exp] 61 / 7e-09 AT5G36930 424 / 1e-125 Disease resistance protein (TIR-NBS-LRR class) family (.1), Disease resistance protein (TIR-NBS-LRR class) family (.2) Lus10014207 [exp] 58 / 5e-08 AT5G36930 446 / 5e-135 Disease resistance protein (TIR-NBS-LRR class) family (.1), Disease resistance protein (TIR-NBS-LRR class) family (.2) Lus10041559 [exp] 56 / 5e-08 AT1G69550 88 / 9e-20 disease resistance protein (TIR-NBS-LRR class) (.1) Lus10001375 [exp] 58 / 7e-08 AT5G36930 464 / 3e-141 Disease resistance protein (TIR-NBS-LRR class) family (.1), Disease resistance protein (TIR-NBS-LRR class) family (.2)
PFAM info	Clan ID Clan name Pfam ID Pfam name Pfam description CL0023 [poplar] [flax] P-loop_NTPase PF00931 [poplar] [flax] NB-ARC NB-ARC domain CL0022 [poplar] [flax] LRR PF13855 [poplar] [flax] LRR_8 Leucine rich repeat
Representative CDS sequence Show only first row Show all	>Potri.003G101000.3 pacid=42786595 polypeptide=Potri.003G101000.3.p locus=Potri.003G101000 ID=Potri.003G101000.3.v4.1 annot-version=v4.1 ATGGACTCGGAGACAGAGAAAAAGATAGTGAACTGGTTGAAAGAAGACGATGCACCAAGACTTATTCTTGTTGGCATTGCTGGAGTAGGGAAAACATGGA TGGCAAAGAGGATTAGAGAATGTGCAATCACTGAGGGTTATGCTGTTCTCTGGGTATCCATGACTGTAAAACACGATAACATGTCGCTTTACAAGATTAT TGCTCACCAGTTGTCTCTACTGTCCACTATTGAGAAATTGGAAGAAGATGACATTGATGAGGAGAAGGAGGAAAGCCCCGATAACTTGAAGAAGAAAGTA TCAGAAAAGCTTGAAGAGATCAGAGAAGAAAACAAGCCTCTTCTGCTAATTCTGGATGATGAGGAGCCCAAGAGATATGGAAGCAAGGACTTGCTGGAGT TGGAACCTCTGTGTAGTGTGAACTCGCAACACAAACTGAAGATTTTAATTTCCAGAAGAAACATTGATGATGGACAGACTGCTGAGACCTCCCAGAGAGA GATTAAGGTTGAACCCCTGTCTGAAGAAGACTCGTTGTCTTTATTGAAGAAAAGAGTGACACGAGTTTCTCAATCTTCTGCTTTTGAAAAATTCTCCAAT GCTACTGCTGAAAAGAGCAAGGGTTTACCGGCTGCAATCATCCTGATGGCTGAAGCCCTAAATCAAGTTGGAGAACACGATCTAGATGGTGCTTTGAAAG AAGCAGAAAAGGATGTATCTTCGTTCCTGCACTGTGCATATGGAATGTTACCCAGTGGTGTAGTAACTGATTGCCTTTGGCACTGTAGAGAATTCTTTCA TAACTATGGCGGCCTGCACTACAACAAGTTGATCACTTACTGGATAATGGAAGGCTATTTTGATCCCGTTACTGATGTTGAGAAGGCTTATGAGAAAGGA CACTCTGTTTTGATGCAGCTTTTGAATCGTCGCATGCTTAAGATACAAGAGGATAATATTGTGATACTTGAAGGTGCAACACAGAGCATTGTTGATAATC GCTTGGGTGGATTCAGTGGGACAGCCAATCTTGGACTGGCTAGCTTGGTACCTGGTGGTGAATTGAAAGGACTTGACAAAATCACACCTATGGATGGCAT GATAAAAACACTGTGCAGTGGTAAAAAATGGAAAGAGGTCCATGCATTACTGATTCATGGAAGCCGTCTTTTAAGGGAAGTCCCTGAAAAATTGTTTCAG CGCATGGATGGACTTGAGGTACTTGCTGTTTTTGATCTCAAACTCAAACAGTTGCCGTCATCTTTGTCTCAATTGAAATACCTGCATGTGCTTGTGCTCA GAGGCTGTGATCTATTAGACAACATTGATCACATCTCAAAGCTCAAGAAGCTAACTGTTCTTGAGATATCTGGGGCTAGTTCCTTGACAAAAATCTCAGA TGATTTTTTTGCACAACTGACTCAACTTCAGAGTCTCAACTTATCTGGATCCCAGCTGCAAGAGTTACCTTCTACTATTTCCAAACTGATTGAACTGCGT TGGCTCATTCTGAGAAGATGTAAGAGGTTGGAAAGTCTGCCAAAAATACATGAACTTTCAAAGCTTGAAGTGTTTGACCTCTCAGATGCTACCTTGTTCA ATAATGTCCAAGAAAAAAGCTTTACAATTTTTAAGAAACTGAAAATTATTGATCTTTCCAATACCCAGATTGTACGCTTACCATTTATCAGTGACCTTAA AGATCTAACGCGCATCTTATTGAGAGGCTGCACAAGCTTATCAAGACTGCCCAAGCTAGAAAATCTACCTCTCCTCCAAATTCTTGATCTTTCAGATGCT GTTCAACTGAAGGAGATCAATGCCCTTAAATTCCTTGATCAATCAGGAATCACAAGCAATCATTCAGCTTCCTGCATTGGCAATCTTTCTGAACTCTATT TGATGGGCTGTCATAAACTAAAAGAACTTCCATGCACAGAAAATCTCACTGGCCTCAGAGTACTTGATCTTTCTGATGCTTCTAGCTTGGAAAGATTCAT CGACAAATCCTTTAACCATCTGAGCCTCCTTCATTCTATCAACCTCTCAAAAACCAAAGTGAGAAGTCTTCCATCTCTGTCTGACCTCCATAATCTTTGT TTTCTATTGCTAAGGGGCTGTTTATGCTTGGAACAACTAGACGTTGGAGGGCTTACTAGACTCAAGGAGCTAGATCTCTCTGGTTGTGAGAATCTGTATG GATTGCAGGGACTTAATGCCCTTCAAAAACTGGAGGTTCTTGATCTTTCTGGTTGTGTTGCTTTACCAGAAATTCAAGTGCAATCATTCCTGAACATGTC TTGCCTTCAGAAACTCAATCTCTCTGCAACAAAGGTTGAAAGTCTAAGTTCTCTAAATTCTAGCTGCCTTTGTCAACTTGTACTAAGAGATTGCACGAAC CTCAAAATCCTTCCATCTTCAAAATCATTGTCAAAGCTTGAGGTGCTTGATCTTTGTGGTGCTAAGGCTTTAGGTGAAATCCTATCAGATCTCTTTGTAC ACATGATTCACCTTCAAAATCTCAACCTATCTCATATCATTCTCCAAGAATTTTCATTTGTTTCCAAATTCACCAAGCTCAGGCAGCTTTCACTGGAATG CTGTCGAGGCTTAGGAACAGTGCCGTTTTTGACAGAACTTACAGGACTCGAGATTCTTGATCTTTCTGAGACAGATGTTTGCTCTCTATCATCCCTGGAA AAACTTAGCCACCTATCTAGGCTTTTGCTCAGAAAATGTTCACGCCTACATAACTTGCCATCCCTGAAATCACTTATTCAACTAGAGGTTCTTGATATAT CAGAGAGTGGCGTCACAGAATTTCCGTATGAAATCTCAGAATTGGCTCATTTAAAGCACCTTTATATGACAAACTTGAAAGTCAAAGTTGATTGGGAGAG AATTAAGCGCTTACCAGGTCAGTTTGACTTTTCTAACCTTGATGAAATTGATGACGTTGGTAAGAATCCTTCCATACTTGTGAATGGGACAGAGTTTTTT CAAAATTTGAAGAAATACGATGCCAGCTTGCTAAAGAAGTACCTGAAGCAAATTTTTTTCTGCGTTTGTCCTCCTATTGAGAAAGCTAATGGTGGTGGAA TGTATCTTCAGAGAGAGGATATTATCTCAAATGATGCTTACTTTGACATTAGAGAGTTTCCGCGTGGTAATGTTCCGTCTATAGAACTCTGTGGATTTGA AAAGTATCCCACTGGTGTGGAGTATGTCCTTGAGCAAACAGAGTGCATCTCTTTGGTTGAAAATGGGTTTATGAAAGGCTTGTCTAGTTTGGGCTCTGAC ACCTTGAAGTTGAAACACTGTTGGTTAGAGAGATGCACCGAAATGGAAAATATTTTCTCTGATCATAAAGATGTCAAACTGGGGGAAAATCTTGAGGTTC TGTGGGTTTCAAACCTTACTAAACTCAAGAGCCTATGCAGTTGGAAAGTGGGATCTATAAACTTGAATAATCTTCAGCATCTGCATGTGGATTGTTGTCC AATGCTGGAAGAGGTTTTTCCTTTAAAGTCAGGGCTGGAAAACCTCAAAATAATGAAAATCAAATTCTGTGAGAGATTAAAGATGGTTTTTAAATGTGAT GGCTCAGTCAACAGCGAATTGCCAAAGTTGCAAGAGTTGCATCTATTTGAATTGCCAGAGCTGACACATTTTGGGGCCCGATATCCACGTGAAGTCAAGC CTAATGTCTTTGCATGCCCAAAGCTGAAACTGGAAGTATCAGGTGACTTCTCAAATGGACAAAATGCATCTGCTCAGAATGCAGGAACTGGAGCATAA
AA sequence Show only first row Show all	>Potri.003G101000.3 pacid=42786595 polypeptide=Potri.003G101000.3.p locus=Potri.003G101000 ID=Potri.003G101000.3.v4.1 annot-version=v4.1 MDSETEKKIVNWLKEDDAPRLILVGIAGVGKTWMAKRIRECAITEGYAVLWVSMTVKHDNMSLYKIIAHQLSLLSTIEKLEEDDIDEEKEESPDNLKKKV SEKLEEIREENKPLLLILDDEEPKRYGSKDLLELEPLCSVNSQHKLKILISRRNIDDGQTAETSQREIKVEPLSEEDSLSLLKKRVTRVSQSSAFEKFSN ATAEKSKGLPAAIILMAEALNQVGEHDLDGALKEAEKDVSSFLHCAYGMLPSGVVTDCLWHCREFFHNYGGLHYNKLITYWIMEGYFDPVTDVEKAYEKG HSVLMQLLNRRMLKIQEDNIVILEGATQSIVDNRLGGFSGTANLGLASLVPGGELKGLDKITPMDGMIKTLCSGKKWKEVHALLIHGSRLLREVPEKLFQ RMDGLEVLAVFDLKLKQLPSSLSQLKYLHVLVLRGCDLLDNIDHISKLKKLTVLEISGASSLTKISDDFFAQLTQLQSLNLSGSQLQELPSTISKLIELR WLILRRCKRLESLPKIHELSKLEVFDLSDATLFNNVQEKSFTIFKKLKIIDLSNTQIVRLPFISDLKDLTRILLRGCTSLSRLPKLENLPLLQILDLSDA VQLKEINALKFLDQSGITSNHSASCIGNLSELYLMGCHKLKELPCTENLTGLRVLDLSDASSLERFIDKSFNHLSLLHSINLSKTKVRSLPSLSDLHNLC FLLLRGCLCLEQLDVGGLTRLKELDLSGCENLYGLQGLNALQKLEVLDLSGCVALPEIQVQSFLNMSCLQKLNLSATKVESLSSLNSSCLCQLVLRDCTN LKILPSSKSLSKLEVLDLCGAKALGEILSDLFVHMIHLQNLNLSHIILQEFSFVSKFTKLRQLSLECCRGLGTVPFLTELTGLEILDLSETDVCSLSSLE KLSHLSRLLLRKCSRLHNLPSLKSLIQLEVLDISESGVTEFPYEISELAHLKHLYMTNLKVKVDWERIKRLPGQFDFSNLDEIDDVGKNPSILVNGTEFF QNLKKYDASLLKKYLKQIFFCVCPPIEKANGGGMYLQREDIISNDAYFDIREFPRGNVPSIELCGFEKYPTGVEYVLEQTECISLVENGFMKGLSSLGSD TLKLKHCWLERCTEMENIFSDHKDVKLGENLEVLWVSNLTKLKSLCSWKVGSINLNNLQHLHVDCCPMLEEVFPLKSGLENLKIMKIKFCERLKMVFKCD GSVNSELPKLQELHLFELPELTHFGARYPREVKPNVFACPKLKLEVSGDFSNGQNASAQNAGTGA

---

DESeq2's median of ratios [POPLAR]

Mapped by: StringTie Salmon Order by: Tissue Experiment Show only core collection Show again Show schematic diagram

---

Coexpressed genes

Compare expression of checked genes Schematic diagram [FLAX] Schematic diagram [POPLAR]

*If you select 4 or less genes and then press "compare expression", expression will be shown as a graph. If you select more than 4 genes, expresion will be shown as a heat map.
*Color represents relative expression level among samples for each gene.

At best	At TF class	At alias	At description		Locus	MR	r	Symbol	NWA:WT	NWB:WT	NWA:OE-ARK2	NWB:OE-ARK2	NWA:miRNA-ARK2	NWB:miRNA-ARK2	NW 0hr	WT H20	WT-NW	TUA1dEY NW	TUA1dEY+TUB15 NW	TUA1dY+TUB9 NW	Pde NW	NWA:WT GA	NWBWT GA	TW:WT	TW:WT GA	NWA:OE-ARK2 GA	NWB:OE-ARK2 GA	TW:OE-ARK2	TW:OE-ARK2 GA	NWA:miRNA-ARK2 GA	NWB:miRNA-ARK2 GA	TW:miRNA-ARK2	TW:miRNA-ARK2 GA	TW 2hr	TW 8hr	TW 24hr	TW 48hr	TW 96hr	TW 336hr	WT ACC	35S::etr1-1 H20	35S::etr1-1 ACC	LMX5::etr1-1 H20	LMX5::etr1-1 ACC	WT-TW	TUA1dEY TW	TUA1dEY+TUB15 TW	TUA1dY+TUB9 TW	Pde TW	OW:WT	OW:WT GA	OW:OE-ARK2	OW:OE-ARK2 GA	OW:miRNA-ARK2	OW:miRNA-ARK2 GA	OW 2hr	OW 8hr	OW 24hr	OW 48hr	OW 96hr	OW 336hr	Root CTR	Root LongCold	Root LongDrougt	Root LongHeat	Root LongSalt	Root ShortCold	Root ShortDrougt	Root ShortHeat	Root ShortSalt	Ptr root	Leaf CTR	Leaf LongCold	Leaf LongDrougt	Leaf LongHeat	Leaf LongSalt	Leaf ShortCold	Leaf ShortDrougt	Leaf ShortHeat	Leaf ShortSalt	Ptr leaf	Stem CTR	Stem LongCold	Stem LongDrougt	Stem LongHeat	Stem LongSalt	Stem ShortCold	Stem ShortDrougt	Stem ShortHeat	Stem ShortSalt	Ptr shoot	Ptr xylem	Ptr phloem	Ptr fiber	Ptr vessel	Ptr fiber vessel ray
AT4G19050			NB-ARC domain-containing disea...		Potri.003G101000 [exp]	0	1
AT5G45160			Root hair defective 3 GTP-bind...		Potri.012G116170 [exp]	1.73	0.7099
AT4G38840			SAUR-like auxin-responsive pro...		Potri.004G164600 [exp]	6.32	0.7095	SAUR68
AT5G47020			unknown protein		Potri.003G086200 [exp]	26.26	0.7021
AT5G03280		CKR1, PIR2, ORE...	ORESARA 3, ORESARA 2, ENHANCED...		Potri.016G090800 [exp]	40.95	0.6816
AT4G33210		SLOMO	SLOW MOTION, F-box family prot...		Potri.018G048700 [exp]	43.49	0.6870
AT3G17850			Protein kinase superfamily pro...		Potri.015G035600 [exp]	45.60	0.6762
AT2G17220		Kin3	kinase 3, Protein kinase super...		Potri.018G133801 [exp]	49.23	0.6606
AT5G15680			ARM repeat superfamily protein...		Potri.017G106100 [exp]	57.31	0.6781
AT1G65690			Late embryogenesis abundant (L...		Potri.019G102500 [exp]	93.44	0.6447
AT3G05040		HST1, HST	HASTY 1, HASTY, ARM repeat sup...		Potri.013G032100 [exp]	136.49	0.6203

Compare expression of checked genes

Potri.003G101000 coexpression network

*The number of genes in the network is adjusted within 50 genes.
*Gene name represents symbol(s) of closest Arabidopsis gene if symbol(s) for the gene itself doesn't exist.
*Circle diameter represents the number of connection with other genes within this network.
*Color for gene name represents subnetwork based on the result of network clustering.