Plant FIBer expression Database

Potri.003G104000 [POPLAR]


External link
JGI Phytozome v13PopgenieAspWood                  
Symbol
Arabidopsis homologues
Locus ID BLAST score/e-value TF class Alias TAIR10 short description
AT5G45380 1028 / 0 ATDUR3 DEGRADATION OF UREA 3, solute:sodium symporters;urea transmembrane transporters (.1)
Paralogs
Gene ID BLAST score/e-value At best hit BLAST score/e-value TAIR10 short description
Flax homologues
Locus ID BLAST score/e-value At best hit BLAST score/e-value TAIR10 short description
Lus10037255
[exp]
1111 / 0 AT5G45380 1095 / 0.0 DEGRADATION OF UREA 3, solute:sodium symporters;urea transmembrane transporters (.1)
Lus10003564
[exp]
806 / 0 AT5G45380 778 / 0.0 DEGRADATION OF UREA 3, solute:sodium symporters;urea transmembrane transporters (.1)
Lus10033882
[exp]
783 / 0 AT5G45380 790 / 0.0 DEGRADATION OF UREA 3, solute:sodium symporters;urea transmembrane transporters (.1)
Lus10000112
[exp]
169 / 2e-49 AT5G45380 152 / 4e-44 DEGRADATION OF UREA 3, solute:sodium symporters;urea transmembrane transporters (.1)
Lus10003565
[exp]
140 / 1e-38 AT5G45380 169 / 9e-50 DEGRADATION OF UREA 3, solute:sodium symporters;urea transmembrane transporters (.1)
PFAM info
Clan ID Clan name Pfam ID Pfam name Pfam description
CL0062 APC PF00474 SSF Sodium:solute symporter family
Representative CDS sequence
>Potri.003G104000.1 pacid=42787078 polypeptide=Potri.003G104000.1.p locus=Potri.003G104000 ID=Potri.003G104000.1.v4.1 annot-version=v4.1
ATGGCTTCTAGTCAGGTGCAGTGTCCGCCATTTGGATTCTCGGCCAAATATTACTCGTCAGAGGGTGGAAGGTGTGTGAGGCAGATCAGTTTCTTTGAAG
GAAAAGCTGTGCTCAATCAAGGTGTTGGCTATTCTGTTATTCTTGGTTTTGGAGCCTTCTTTGCTGTCTTCACCTCTTTCCTGGTATGGCTGGAGAAACG
ATATGTTGGGTCTCGCCACACTTCAGAATGGTTCAATACCGCTGGCAGGAATGTAAAAACAGGACTTATTGCCAGTGTGATTGTGTCCCAGTGGACATGG
GCTGCAACCATCCTGCAAAGCTCCAATGTTGCCTGGCAGTATGGAATTAGTGGGCCCTTTTGGTATGCTAGTGGGGCTACTATCCAGGTACTTTTGTTTG
GTGTGATGGCTATAGAGATTAAAAGAAAGGCTCCTCATGCTCATACTGTTTGTGAAATTGTAAAAGCCCGTTGGGGGACTCCTGCACATATAGTTTTCCT
TGCCTTCTGCTTTTTGACAAACATTATTGTCACGGCTATGCTACTTCTTGGTGGTTCTGCTGTTGTAAACGCACTTACCGGAGTGAACATTTATGCCGCT
AGCTTTCTGATACCGCTTGGAGTCATTGTTTACACTCTCGCCGGAGGACTCAAGGCAACTTTCTTGGCAAGTTACATACATTCTGTTATAGTGCATCTGG
TTCTAGTTATCTTTGTGTACCTAGTTTACACTGCAAGCAGCGAACTAGGTAGTCCCAGTGTCATATACCACCGTCTATTAGAGGTCGGAAACAAATCAAG
AGTATGCCAGGAGCCATTTTCCCATGATGGACAATCCTGTGGTCCCGTTAGTGGAAATTACAAAGGGTCTTACCTAACAATGTTGAGTTCAGGTGGGCTT
GTGTTTGGAATTATAAACATCGTAGGCAACTTCGGCACAGTTTTCGTTGACAACGGATATTGGGTTAGTGCGATAGCTGCAAGGCCTTCATCAACTCACA
AGGGCTACTTGTTGGGTGGGCTGGTGTGGTTTGCTGTACCATTCTCTTTAGCAACATCTCTGGGTCTAGGAGCGCTTGCCCTTGATCTACCGATAACAGA
GAGCGAGGCAAGCCATGGACTAGTTCCTCCTGCTACTGCTATAGCTTTGATGGGGAAGGGAGGATCCATACTTCTTCTAACAATGCTTTTTATGGCTGTG
ACATCTGCTGGGTCATCTGAGCTGATTGCAGTTTCTTCACTGTGCACATACGATATATACCGTACCTACATAAATCCAGATGCAAGTGGGAAAAAAATCC
TCAAAGTATCAAGGGCTGTTGTCCTAGGCTTCGGATGTTTCATGGGATTGTTAGCAGTGATATTAAACAAAGCAGGAGTTTCATTGGGCTGGATGTATCT
TGCCATGGGAATTCTTATCGGTTCTGCTGTCCTTCCTATAGCCTTTATGCTTCTATGGAGGAAAGCAAATGCAATAGGTGCCATTCTTGGAACAATCATC
GGATGTGTTCTTGGGGTTATAACTTGGCTAGTAGTTACGAAGGTCGAGTATGGTCGGATAAACCTTGACACAACTGGGCGAAATGCACCAATGCTTGCAG
GCAACCTTGTGTCAATACTTACTGGTGGAGCAATCCATGCTGTCTGTAGCTTTTTATGGCCACAAGATTATGATTGGGATACGACCAAGCAGATCACAAT
GGTCGAAAAGGAAAAGAATGAGCTGCCAGCAGAAGAGTTCAAGGAGGAGAAACTCATAAAAGCGAAAGCCTGGATTATTAAATGGGGTGTTGGTTTTACT
GTGGTGATTGTTATATTATGGCCTCTCCTCACTCTTCCTGCAGGTGAGTTTGGTTTAGGCTACTTCACATTCTGGGCAGTGATAGCTATAGTATGGGGTA
CCATTGGATCGGCGGTGATTATTGCTTTACCATTGATGGAAAGCTGGGAGACCATCCAGAGTGTCTGCCTCGGCATGTTTACTAATGACAGGCTGATGGA
AAAGGTGGAGGAGATGAATATCAGGCTACATGCAATTATTTTGGCTATTCCTGAAGCAGAGAGAATTTATTTGCTCGAGGAAGAGAAGGCCAAGAAAAAG
GAAGAATCTGAGCACCTAGCTTAA
AA sequence
>Potri.003G104000.1 pacid=42787078 polypeptide=Potri.003G104000.1.p locus=Potri.003G104000 ID=Potri.003G104000.1.v4.1 annot-version=v4.1
MASSQVQCPPFGFSAKYYSSEGGRCVRQISFFEGKAVLNQGVGYSVILGFGAFFAVFTSFLVWLEKRYVGSRHTSEWFNTAGRNVKTGLIASVIVSQWTW
AATILQSSNVAWQYGISGPFWYASGATIQVLLFGVMAIEIKRKAPHAHTVCEIVKARWGTPAHIVFLAFCFLTNIIVTAMLLLGGSAVVNALTGVNIYAA
SFLIPLGVIVYTLAGGLKATFLASYIHSVIVHLVLVIFVYLVYTASSELGSPSVIYHRLLEVGNKSRVCQEPFSHDGQSCGPVSGNYKGSYLTMLSSGGL
VFGIINIVGNFGTVFVDNGYWVSAIAARPSSTHKGYLLGGLVWFAVPFSLATSLGLGALALDLPITESEASHGLVPPATAIALMGKGGSILLLTMLFMAV
TSAGSSELIAVSSLCTYDIYRTYINPDASGKKILKVSRAVVLGFGCFMGLLAVILNKAGVSLGWMYLAMGILIGSAVLPIAFMLLWRKANAIGAILGTII
GCVLGVITWLVVTKVEYGRINLDTTGRNAPMLAGNLVSILTGGAIHAVCSFLWPQDYDWDTTKQITMVEKEKNELPAEEFKEEKLIKAKAWIIKWGVGFT
VVIVILWPLLTLPAGEFGLGYFTFWAVIAIVWGTIGSAVIIALPLMESWETIQSVCLGMFTNDRLMEKVEEMNIRLHAIILAIPEAERIYLLEEEKAKKK
EESEHLA

DESeq2's median of ratios [POPLAR]

Mapped by: Order by: Show schematic diagram

Coexpressed genes

Only top 10 genes are shown Show allDownload tab-delimited text
Schematic diagram [FLAX] Schematic diagram [POPLAR]

*If you select 4 or less genes and then press "compare expression", expression will be shown as a graph. If you select more than 4 genes, expresion will be shown as a heat map.
*Color represents relative expression level among samples for each gene.
At best At TF class At alias At description Locus MR r Symbol NWA:WTNWB:WTNWA:OE-ARK2NWB:OE-ARK2NWA:miRNA-ARK2NWB:miRNA-ARK2NW 0hrWT H20WT-NWTUA1dEY NWTUA1dEY+TUB15 NWTUA1dY+TUB9 NWPde NWNWA:WT GANWBWT GATW:WTTW:WT GANWA:OE-ARK2 GANWB:OE-ARK2 GATW:OE-ARK2TW:OE-ARK2 GANWA:miRNA-ARK2 GANWB:miRNA-ARK2 GATW:miRNA-ARK2TW:miRNA-ARK2 GATW 2hrTW 8hrTW 24hrTW 48hrTW 96hrTW 336hrWT ACC35S::etr1-1 H2035S::etr1-1 ACCLMX5::etr1-1 H20LMX5::etr1-1 ACCWT-TWTUA1dEY TWTUA1dEY+TUB15 TWTUA1dY+TUB9 TWPde TWOW:WTOW:WT GAOW:OE-ARK2OW:OE-ARK2 GAOW:miRNA-ARK2OW:miRNA-ARK2 GAOW 2hrOW 8hrOW 24hrOW 48hrOW 96hrOW 336hrRoot CTRRoot LongColdRoot LongDrougtRoot LongHeatRoot LongSaltRoot ShortColdRoot ShortDrougtRoot ShortHeatRoot ShortSaltPtr rootLeaf CTRLeaf LongColdLeaf LongDrougtLeaf LongHeatLeaf LongSaltLeaf ShortColdLeaf ShortDrougtLeaf ShortHeatLeaf ShortSaltPtr leafStem CTRStem LongColdStem LongDrougtStem LongHeatStem LongSaltStem ShortColdStem ShortDrougtStem ShortHeatStem ShortSaltPtr shootPtr xylemPtr phloemPtr fiberPtr vesselPtr fiber vessel ray
AT5G45380 ATDUR3 DEGRADATION OF UREA 3, solute:... Potri.003G104000
[exp]
0 1
AT1G20780 ATPUB44, SAUL1 ARABIDOPSIS THALIANA PLANT U-B... Potri.001G024600
[exp]
1.00 0.9254
AT4G33950 ATOST1, P44, SR... SNF1-RELATED PROTEIN KINASE 2.... Potri.007G096400
[exp]
2.82 0.9102
AT1G11340 S-locus lectin protein kinase ... Potri.011G035700
[exp]
4.24 0.8793
AT5G49760 Leucine-rich repeat protein ki... Potri.004G232400
[exp]
5.47 0.8871
AT2G43500 NLP8 Plant regulator RWP-RK family ... Potri.007G133400
[exp]
6.32 0.8898
AT3G02100 UDP-Glycosyltransferase superf... Potri.013G022800
[exp]
6.48 0.8551
AT5G03570 FPN2, ATIREG2 FERROPORTIN 2, ARABIDOPSIS THA... Potri.016G128600
[exp]
8.12 0.8603
AT5G47740 Adenine nucleotide alpha hydro... Potri.006G003900
[exp]
8.48 0.8511
AT4G10770 ATOPT7 ARABIDOPSIS THALIANA OLIGOPEPT... Potri.007G056900
[exp]
9.00 0.8648
AT4G23850 LACS4 long-chain acyl-CoA synthetase... Potri.003G139700
[exp]
10.95 0.8671

Potri.003G104000 coexpression network

*The number of genes in the network is adjusted within 50 genes.
*Gene name represents symbol(s) of closest Arabidopsis gene if symbol(s) for the gene itself doesn't exist.
*Circle diameter represents the number of connection with other genes within this network.
*Color for gene name represents subnetwork based on the result of network clustering.