Plant FIBer expression Database

External link	JGI Phytozome v13 [genome browser] Popgenie AspWood
Symbol
Arabidopsis homologues Show only best Show top 10	Locus ID BLAST score/e-value TF class Alias TAIR10 short description AT2G35060 985 / 0 KUP11 K+ uptake permease 11, K+ uptake permease 11 (.1), K+ uptake permease 11 (.2) AT1G31120 981 / 0 KUP10 K+ uptake permease 10, K+ uptake permease 10 (.1) AT4G19960 879 / 0 KT9, HAK9, ATKUP9 K+ uptake permease 9, K+ uptake permease 9 (.1), K+ uptake permease 9 (.2) AT5G14880 617 / 0 Potassium transporter family protein (.1) AT1G60160 612 / 0 Potassium transporter family protein (.1) AT1G70300 610 / 0 KUP6 K+ uptake permease 6, K+ uptake permease 6 (.1) AT4G13420 592 / 0 HAK5, ATHAK5 high affinity K+ transporter 5, ARABIDOPSIS THALIANA HIGH AFFINITY K+ TRANSPORTER 5, high affinity K+ transporter 5 (.1) AT2G40540 590 / 0 ATKUP2, ATKT2, TRK2, SHY3, KT2 potassium transporter 2 (.1.2) AT3G02050 583 / 0 ATKT4, ATKUP3, KUP3 K+ uptake transporter 3, ARABIDOPSIS THALIANA POTASSIUM TRANSPORTER 4, K+ uptake transporter 3 (.1) AT2G30070 574 / 0 ATKUP1, ATKT1P, ATKT1 POTASSIUM UPTAKE TRANSPORTER 1, potassium transporter 1 (.1)
Paralogs Show only best Show top 10	Gene ID BLAST score/e-value At best hit BLAST score/e-value TAIR10 short description Potri.001G123800 [exp] 1047 / 0 AT2G35060 1149 / 0.0 K+ uptake permease 11, K+ uptake permease 11 (.1), K+ uptake permease 11 (.2) Potri.003G109700 [exp] 1028 / 0 AT2G35060 1155 / 0.0 K+ uptake permease 11, K+ uptake permease 11 (.1), K+ uptake permease 11 (.2) Potri.001G123700 [exp] 1017 / 0 AT2G35060 1047 / 0.0 K+ uptake permease 11, K+ uptake permease 11 (.1), K+ uptake permease 11 (.2) Potri.014G144900 [exp] 661 / 0 AT3G02050 1175 / 0.0 K+ uptake transporter 3, ARABIDOPSIS THALIANA POTASSIUM TRANSPORTER 4, K+ uptake transporter 3 (.1) Potri.002G237500 [exp] 646 / 0 AT3G02050 1179 / 0.0 K+ uptake transporter 3, ARABIDOPSIS THALIANA POTASSIUM TRANSPORTER 4, K+ uptake transporter 3 (.1) Potri.010G094400 [exp] 618 / 0 AT1G60160 1209 / 0.0 Potassium transporter family protein (.1) Potri.008G147400 [exp] 618 / 0 AT1G70300 1221 / 0.0 K+ uptake permease 6, K+ uptake permease 6 (.1) Potri.010G094300 [exp] 611 / 0 AT1G70300 1228 / 0.0 K+ uptake permease 6, K+ uptake permease 6 (.1) Potri.019G056500 [exp] 603 / 0 AT2G40540 1272 / 0.0 potassium transporter 2 (.1.2)
Flax homologues Show only best Show top 10	Locus ID BLAST score/e-value At best hit BLAST score/e-value TAIR10 short description Lus10018324 [exp] 1005 / 0 AT2G35060 1212 / 0.0 K+ uptake permease 11, K+ uptake permease 11 (.1), K+ uptake permease 11 (.2) Lus10036221 [exp] 959 / 0 AT2G35060 1173 / 0.0 K+ uptake permease 11, K+ uptake permease 11 (.1), K+ uptake permease 11 (.2) Lus10038361 [exp] 959 / 0 AT2G35060 1164 / 0.0 K+ uptake permease 11, K+ uptake permease 11 (.1), K+ uptake permease 11 (.2) Lus10030857 [exp] 633 / 0 AT1G70300 1249 / 0.0 K+ uptake permease 6, K+ uptake permease 6 (.1) Lus10030632 [exp] 628 / 0 AT1G70300 1238 / 0.0 K+ uptake permease 6, K+ uptake permease 6 (.1) Lus10030539 [exp] 600 / 0 AT2G40540 1245 / 0.0 potassium transporter 2 (.1.2) Lus10012992 [exp] 588 / 0 AT1G70300 1188 / 0.0 K+ uptake permease 6, K+ uptake permease 6 (.1) Lus10034215 [exp] 571 / 0 AT2G40540 1239 / 0.0 potassium transporter 2 (.1.2) Lus10012993 [exp] 569 / 0 AT1G60160 1237 / 0.0 Potassium transporter family protein (.1) Lus10027004 [exp] 562 / 0 AT4G13420 828 / 0.0 high affinity K+ transporter 5, ARABIDOPSIS THALIANA HIGH AFFINITY K+ TRANSPORTER 5, high affinity K+ transporter 5 (.1)
PFAM info	Clan ID Clan name Pfam ID Pfam name Pfam description CL0062 [poplar] [flax] APC PF02705 [poplar] [flax] K_trans K+ potassium transporter
Representative CDS sequence Show only first row Show all	>Potri.003G109800.3 pacid=42785984 polypeptide=Potri.003G109800.3.p locus=Potri.003G109800 ID=Potri.003G109800.3.v4.1 annot-version=v4.1 ATGGCCTCGTTATCAATAGATAACGAGGAAATTGGTAATAAAGGTAGAATGTGGGCCTTGCAGCAGCAGCTTGATCCACCTATGGATGAAGAGGGTGGGG GGCTTAGGAACAGGTATGATGAAAAGGACTCTTCTACTTTATTTCTCCTTCAGCTTGCATTCCAAAGCCTTGGTGTGGTGTACGGAGATTTAGGCACATC TCCTTTATATGTTTTCTACAACACATTTCCTGATGGAATCAAGGATCCAGAGGACGTGATTGGAGCTCTATCACTGATTATATATTCTCTCACTCTCGTC CCTCTCCTGAAATATGTTTTCATTGTTTGTAGGGCAAATGATAATGGACAAGGAGGAACATTTGCTCTTTATTCGCTGCTCTGCCGACATGCAAAACTGA AGACGATACCCAACCAAGACCATTCTGATGAGAAACTAACAACTTATAGTCATTCTACATTTCATGAAAAATCCTTTGCTGCAAAGACCAAGAGATGGTT GGAAAGACATACATTCAGGAAGAATTCACTTCTTGTTCTCGTTCTTGTAGGCACTTGCATGGTGATCGGGGATGGAATTCTCACTCCGGCCATTTCAGTT TTATCGGCTGTTCAAGGAATCAAGTTAGGCCGTCCTGAGATGAGTACTGAAATTGTTCTTGTTGTTGCCGTGATAATATTAGTAGTTTTGTTCTGTCTGC AACACCGTGGTGTAGAAAAAATTACCTGGATTTTTGCCCCTATTGTCCTCCTCTGGTTTCTTTTAATCGGAGGTATCGGCATATACAATATTATCAAATA TGATAGCAGTGCTCTGAAAGCTTTTTCACCACTGTATATATACCGATATTTCAAAAGGGGTCGGAAAGAGAGCTGGACTTCTCTTGGAGGTGTTATGCTC AGTATAACAGGGACGGAAGCCCTCTTTGCGGATCTATCCCATTTTTCAGTGGCAAGCATACAAATTGCTTTCACAGTAGTAGTATTTCCGTGCCTTCTGT CAGCCTATTCTGGACAAGCTGCATACCTCCTGAAAAACTCGGATAATGTAGTTGATGCATTTTATCGATCTATTCCAGATAGCATTTATTGGCCAGTGCT CATTATTGCGACAGGCGCTGCAGTTGTTGCTAGCCAGGCTACCATAACTGCAACTTTTTCAGTGATCAAGCAGGCTGCTGCAGTATATTGTTTTCCTAGA GTTAAAGTTATGCATACATCAGAGAAAATGCTGAGCCATATATACATCCCAGAAATTAATTGGATCCTTATGATTCTTTGCATCGCTGTGACAGTTGGTT TCAGAAATCAAAGCCAAATTGGAAATGCTTCTGGAATTGCAGTTGTGATAGTCATGCTGGTGACGACAGCCCTTATGGTTCTAATCATGTTATTAGTATG GCGGTGGCATTGGATTCTTGTCCTAGTATTCACCCTGCTATCCCTGGTTGTGGAGGTTACTTACTTTTCTGCTTTACTCTTCAAGATCAATCAAGGTGGT TGGGTTCCTCTAGTAATTGCTGCAGTCTTTTTAACCATCATGTGTGCTTGGCATTATGGGACAATGAAACTCTACGAGTTTGAGGTGCATAGCAAAGTTT CAATGCCATGGATTCTTGGGCTTGGCCCAAGCTTAGGTCTTGTTCGGGTGCCTGGCGTTGGACTTGTATACACTGAACTAGCCAGGGGGGTTCCTCACAT TTTTTCGCACTTTTTTACCAACCTACCTGCACTCCATTCTGTTGTGGTTTTTGTCTGTATAAAGTACCTTCCAGTCCATACAGTCCTGGAAGAAGAGAGA TTCCTTGTAAGGCGGATTGGATCCAAGGATTTCCACATGTTCCGTTGTGTTGCAAGATATGGCTATAAAGACCTTCATAAGAAGGATGATGATTTTGAGA ATAAGCTCTTTGACAGCCTTTTTCGTTTTGTCAGGCTTGAGAGCATGATGGAAGGGTTTTCAGATTTGGATGAATATAGCTTAGATGATGAGCTGACTAG GGAATTAAGAAATGGCCTTTCGGGTTATAATGGCGACGAACTTTCTTCCACTGTCGATGAAACCATCTCTTCAGTTGGTTCAACGACTGTAAATTCTGAA TTGCAGGCAAACAATGCTATCCTGACATCCAATCAGGTGATCAGCCAAATCACGAATGGTGAGTTGCAACTCTTGAGGAACTGTAGAGATTCTGGAGTGG TCCACATTCTAGGGAATACAGTAGTGACAGCAAGACAGGATTCCAGTTTATGGAAGAAAATAGCAATTGATTATGTGTATGCTCTTCTAAGAAAGTTGTG CAGGGAAAACACTGTGGTTTTCAATGTTCCTTGTGAGAGTCTATTGAATGTTGGCCAAGTTATCCATGTATAA
AA sequence Show only first row Show all	>Potri.003G109800.3 pacid=42785984 polypeptide=Potri.003G109800.3.p locus=Potri.003G109800 ID=Potri.003G109800.3.v4.1 annot-version=v4.1 MASLSIDNEEIGNKGRMWALQQQLDPPMDEEGGGLRNRYDEKDSSTLFLLQLAFQSLGVVYGDLGTSPLYVFYNTFPDGIKDPEDVIGALSLIIYSLTLV PLLKYVFIVCRANDNGQGGTFALYSLLCRHAKLKTIPNQDHSDEKLTTYSHSTFHEKSFAAKTKRWLERHTFRKNSLLVLVLVGTCMVIGDGILTPAISV LSAVQGIKLGRPEMSTEIVLVVAVIILVVLFCLQHRGVEKITWIFAPIVLLWFLLIGGIGIYNIIKYDSSALKAFSPLYIYRYFKRGRKESWTSLGGVML SITGTEALFADLSHFSVASIQIAFTVVVFPCLLSAYSGQAAYLLKNSDNVVDAFYRSIPDSIYWPVLIIATGAAVVASQATITATFSVIKQAAAVYCFPR VKVMHTSEKMLSHIYIPEINWILMILCIAVTVGFRNQSQIGNASGIAVVIVMLVTTALMVLIMLLVWRWHWILVLVFTLLSLVVEVTYFSALLFKINQGG WVPLVIAAVFLTIMCAWHYGTMKLYEFEVHSKVSMPWILGLGPSLGLVRVPGVGLVYTELARGVPHIFSHFFTNLPALHSVVVFVCIKYLPVHTVLEEER FLVRRIGSKDFHMFRCVARYGYKDLHKKDDDFENKLFDSLFRFVRLESMMEGFSDLDEYSLDDELTRELRNGLSGYNGDELSSTVDETISSVGSTTVNSE LQANNAILTSNQVISQITNGELQLLRNCRDSGVVHILGNTVVTARQDSSLWKKIAIDYVYALLRKLCRENTVVFNVPCESLLNVGQVIHV

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DESeq2's median of ratios [POPLAR]

Mapped by: StringTie Salmon Order by: Tissue Experiment Show only core collection Show again Show schematic diagram

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Coexpressed genes

Compare expression of checked genes Schematic diagram [FLAX] Schematic diagram [POPLAR]

*If you select 4 or less genes and then press "compare expression", expression will be shown as a graph. If you select more than 4 genes, expresion will be shown as a heat map.
*Color represents relative expression level among samples for each gene.

At best	At TF class	At alias	At description		Locus	MR	r	Symbol	NWA:WT	NWB:WT	NWA:OE-ARK2	NWB:OE-ARK2	NWA:miRNA-ARK2	NWB:miRNA-ARK2	NW 0hr	WT H20	WT-NW	TUA1dEY NW	TUA1dEY+TUB15 NW	TUA1dY+TUB9 NW	Pde NW	NWA:WT GA	NWBWT GA	TW:WT	TW:WT GA	NWA:OE-ARK2 GA	NWB:OE-ARK2 GA	TW:OE-ARK2	TW:OE-ARK2 GA	NWA:miRNA-ARK2 GA	NWB:miRNA-ARK2 GA	TW:miRNA-ARK2	TW:miRNA-ARK2 GA	TW 2hr	TW 8hr	TW 24hr	TW 48hr	TW 96hr	TW 336hr	WT ACC	35S::etr1-1 H20	35S::etr1-1 ACC	LMX5::etr1-1 H20	LMX5::etr1-1 ACC	WT-TW	TUA1dEY TW	TUA1dEY+TUB15 TW	TUA1dY+TUB9 TW	Pde TW	OW:WT	OW:WT GA	OW:OE-ARK2	OW:OE-ARK2 GA	OW:miRNA-ARK2	OW:miRNA-ARK2 GA	OW 2hr	OW 8hr	OW 24hr	OW 48hr	OW 96hr	OW 336hr	Root CTR	Root LongCold	Root LongDrougt	Root LongHeat	Root LongSalt	Root ShortCold	Root ShortDrougt	Root ShortHeat	Root ShortSalt	Ptr root	Leaf CTR	Leaf LongCold	Leaf LongDrougt	Leaf LongHeat	Leaf LongSalt	Leaf ShortCold	Leaf ShortDrougt	Leaf ShortHeat	Leaf ShortSalt	Ptr leaf	Stem CTR	Stem LongCold	Stem LongDrougt	Stem LongHeat	Stem LongSalt	Stem ShortCold	Stem ShortDrougt	Stem ShortHeat	Stem ShortSalt	Ptr shoot	Ptr xylem	Ptr phloem	Ptr fiber	Ptr vessel	Ptr fiber vessel ray
AT2G35060		KUP11	K+ uptake permease 11, K+ upta...		Potri.003G109800 [exp]	0	1
AT1G16170			unknown protein		Potri.001G040300 [exp]	11.91	0.8872
AT1G13170		ORP1D	OSBP(oxysterol binding protein...		Potri.008G182766 [exp]	12.44	0.8574
AT4G14770	CPP	ATTCX2	TESMIN/TSO1-like CXC 2 (.1)		Potri.018G030000 [exp]	12.64	0.8605
AT1G36050			Endoplasmic reticulum vesicle ...		Potri.002G094400 [exp]	25.98	0.8698
AT1G16170			unknown protein		Potri.001G038750 [exp]	32.77	0.8561
					Potri.001G389650 [exp]	32.86	0.8371
AT2G38910		CPK20	calcium-dependent protein kina...		Potri.006G199400 [exp]	37.52	0.8393	CPK20.1
AT3G13845			unknown protein		Potri.001G196150 [exp]	39.29	0.8476
AT1G73240			unknown protein		Potri.003G213050 [exp]	42.72	0.8306
AT5G52800			DNA primases (.1.2.3)		Potri.017G148000 [exp]	42.98	0.8447

Compare expression of checked genes

Potri.003G109800 coexpression network

*The number of genes in the network is adjusted within 50 genes.
*Gene name represents symbol(s) of closest Arabidopsis gene if symbol(s) for the gene itself doesn't exist.
*Circle diameter represents the number of connection with other genes within this network.
*Color for gene name represents subnetwork based on the result of network clustering.