Plant FIBer expression Database

External link	JGI Phytozome v13 [genome browser] Popgenie AspWood
Symbol
Arabidopsis homologues Show only best Show top 10	Locus ID BLAST score/e-value TF class Alias TAIR10 short description AT4G00150 366 / 1e-117 GRAS ATHAM3, SCL6, LOM3 LOST MERISTEMS 3, ARABIDOPSIS THALIANA HAIRY MERISTEM 3, GRAS family transcription factor (.1) AT2G45160 325 / 6e-101 GRAS ATHAM1, LOM1 LOST MERISTEMS 1, ARABIDOPSIS THALIANA HAIRY MERISTEM 1, GRAS family transcription factor (.1) AT3G60630 306 / 8e-94 GRAS ATHAM2, LOM2 LOST MERISTEMS 2, ARABIDOPSIS THALIANA HAIRY MERISTEM 2, GRAS family transcription factor (.1) AT4G36710 208 / 5e-59 GRAS AtHAM4 Arabidopsis thaliana HAIRY MERISTEM 4, GRAS family transcription factor (.1) AT2G04890 128 / 9e-32 GRAS SCL21 SCARECROW-like 21 (.1) AT5G41920 128 / 1e-31 GRAS GRAS family transcription factor (.1) AT3G03450 129 / 3e-31 GRAS RGL2 RGA-like 2 (.1) AT5G66770 128 / 1e-30 GRAS GRAS family transcription factor (.1) AT5G17490 126 / 2e-30 GRAS AtRGL3, RGL3 RGA-like protein 3 (.1) AT2G01570 125 / 9e-30 GRAS RGA1 REPRESSOR OF GA1-3 1, REPRESSOR OF GA, GRAS family transcription factor family protein (.1)
Paralogs Show only best Show top 10	Gene ID BLAST score/e-value At best hit BLAST score/e-value TAIR10 short description Potri.001G122800 [exp] 1123 / 0 AT4G00150 376 / 1e-121 LOST MERISTEMS 3, ARABIDOPSIS THALIANA HAIRY MERISTEM 3, GRAS family transcription factor (.1) Potri.002G144700 [exp] 437 / 1e-142 AT4G00150 437 / 2e-145 LOST MERISTEMS 3, ARABIDOPSIS THALIANA HAIRY MERISTEM 3, GRAS family transcription factor (.1) Potri.014G060200 [exp] 426 / 9e-139 AT4G00150 420 / 2e-139 LOST MERISTEMS 3, ARABIDOPSIS THALIANA HAIRY MERISTEM 3, GRAS family transcription factor (.1) Potri.014G060500 [exp] 413 / 6e-134 AT4G00150 429 / 8e-143 LOST MERISTEMS 3, ARABIDOPSIS THALIANA HAIRY MERISTEM 3, GRAS family transcription factor (.1) Potri.002G144200 [exp] 408 / 2e-131 AT4G00150 411 / 2e-135 LOST MERISTEMS 3, ARABIDOPSIS THALIANA HAIRY MERISTEM 3, GRAS family transcription factor (.1) Potri.007G029200 [exp] 203 / 1e-56 AT4G36710 419 / 4e-142 Arabidopsis thaliana HAIRY MERISTEM 4, GRAS family transcription factor (.1) Potri.005G125800 [exp] 201 / 9e-56 AT4G36710 466 / 1e-160 Arabidopsis thaliana HAIRY MERISTEM 4, GRAS family transcription factor (.1) Potri.001G326000 [exp] 140 / 2e-34 AT1G66350 296 / 2e-92 RGA-like 1 (.1) Potri.007G026300 [exp] 134 / 9e-33 AT5G66770 589 / 0.0 GRAS family transcription factor (.1)
Flax homologues Show only best Show top 10	Locus ID BLAST score/e-value At best hit BLAST score/e-value TAIR10 short description Lus10028934 [exp] 803 / 0 AT4G00150 397 / 7e-130 LOST MERISTEMS 3, ARABIDOPSIS THALIANA HAIRY MERISTEM 3, GRAS family transcription factor (.1) Lus10004353 [exp] 698 / 0 AT4G00150 390 / 2e-127 LOST MERISTEMS 3, ARABIDOPSIS THALIANA HAIRY MERISTEM 3, GRAS family transcription factor (.1) Lus10041721 [exp] 226 / 1e-64 AT4G36710 456 / 1e-156 Arabidopsis thaliana HAIRY MERISTEM 4, GRAS family transcription factor (.1) Lus10024029 [exp] 221 / 5e-63 AT4G36710 452 / 4e-155 Arabidopsis thaliana HAIRY MERISTEM 4, GRAS family transcription factor (.1) Lus10041540 [exp] 152 / 3e-38 AT1G66350 317 / 2e-100 RGA-like 1 (.1) Lus10012554 [exp] 152 / 5e-38 AT1G66350 318 / 1e-99 RGA-like 1 (.1) Lus10017554 [exp] 135 / 4e-33 AT4G17230 612 / 0.0 SCARECROW-like 13 (.1) Lus10000539 [exp] 131 / 6e-32 AT4G17230 617 / 0.0 SCARECROW-like 13 (.1) Lus10027123 [exp] 126 / 1e-30 AT1G55580 298 / 5e-97 SCARECROW-LIKE 18, Lateral Suppressor, GRAS family transcription factor (.1) Lus10033583 [exp] 124 / 2e-29 AT2G01570 681 / 0.0 REPRESSOR OF GA1-3 1, REPRESSOR OF GA, GRAS family transcription factor family protein (.1)
PFAM info	Clan ID Clan name Pfam ID Pfam name Pfam description CL0063 [poplar] [flax] NADP_Rossmann PF03514 [poplar] [flax] GRAS GRAS domain family
Representative CDS sequence Show only first row Show all	>Potri.003G110800.2 pacid=42784718 polypeptide=Potri.003G110800.2.p locus=Potri.003G110800 ID=Potri.003G110800.2.v4.1 annot-version=v4.1 ATGCCCTTTCGTTTGCAGGCCAAGGGGGGTGTAGATTTTGATGGTTTTGCTTCAGTTTGTTCTCAACAAGAAACTTGGACTCAAAGGCAACGACAACAAC TTCTTGAAGTAAATTGCTTTGCAAGCAAAGAACCTAACTCAGTTCTTCATATGAGAAGAAGTCCAAGCCCACCTACATCAGTTTCGACACTCTCCTCCTC CTCAAACGGCGGCGCCGGTGGAAACACCAGCGACAAGACCGCCACCATCACGGCAACAGATAAAGTAGTGAACCCAGTGAACAATGAAAGGAAAGATGAA TGGGCAACAGAGCTGCAGCCATTCCCAAGTGGACTAGAGTTTGTTTCAACAGGAGAAAGATGTGGACTTGGACTAGAAGACTGGGAGAATATGCTGTCAG AGCCAAGTCAAGAACAATCCTTGTTGAGGTGGATAGCTGGGGATGTGGATGACACACAGTTTGGGCTAAAGCAGTTGTTGCAAAGTGGAAGCAGTCAGCT GGAATTTGATGGCAATGTTGGCGGCGGTTCTGGTGTTGGTGGATTGGGGATTGTTGATCAAGGACCTGGGTTTGAGTCCTTAAGTGGAATTCCAGGTGGC GTGTCAAGCATTGGTACTAATTTGGCTCCTTTTCCTGGTCCTGGGGTTTCAAATATTGGGTCTGGTTTAGTTGCTCCTAGCTCTTCTTCTGGTTTGATTA ACTACAAAAATGTTGGATTTGGCAGCAACAACAACTCTAGTGTGCAAAGCCCAGTTTTTAGTTCTCCAACTAACAGTGTTTCACTTCCATTTTCTTTACC TCCTGGTATGGTTTATCATCAAAATCAGCTGCAACAAATTGAGGCCCCAGAGGAGAAGCCGCATATACTAAATCCACAGATATTGATGAACCAGCAACAG TCTCATAATCCACGCATTCGAAATCCCAACCTTTTCTTGCAATTACCATTTTATCAGCAAGAAAACCGCCCTCTCCATTCCCAACTCAAGCGCCACAACT CTGGTGGCATAGACCCAATCTCTCATGTAATCCCAAAACTACCATTCTCTGATCCTGGGCAAGAACTTTTGCTAAGAAAACACCAACAACAGCAACTGGG GTTTCCTCAGAGAGTCCAGTTTCTTCACCAACAACTTCAACAGAAGCCGTTGGTGGTGAAGAAGGAAGATTTAGGAACTCAACATTACCAGCACCAGCAC CAGCACCAGCACCAGCACCAGCACCAGCACCAGCATGCTTTGTTGGACCAGCTCTACAAGGCAGCTGAGTTGGTAGGGACTGGGAACTTCTCACACGCGC AAGGGATATTGGCGCGGCTCAATCAACAGCTCTTCCCAACTGGGAAGCCTCTCCATAGGGCAGCTTTCTACTTCAAGGAGGCTCTTCAATTGCTCATTCT CATGAATAATAACTCAGTCACTGCTCCACCACCTAGGAGCCCCACCCCATTCGATGTCATCTTCAAAATGAGTGCTTACAAAGTCTTATCTGAGGTTTCT CCACTTATCCAATTTGTCAACTTCACCTGCAATCAGGCCCTCCTTGAAGCAGTTGACGATGCAGATAGGATTCACATTGTGGACTTTGATATTGGATTTG GTGCTCAATGGGCCTCTTTCATGCAGGAACTTCCCCGGAATAGAGGTGGCCGATCATTGAAAACCACTGCCTTTGCCTCTCCTTCAACTCACCATCCCGT TGAACTTAGTCTTATGCGCGATAACTTAACTCAATTTGCTAATGAGATTGGTCTAAGTTTTGAACTTGATGTGATTAACTTTGATTCTTTGGAGCAACAT TGTTATTCTCTCCCCTTTTTCCGAACTAGTGAACATGAGGCTGTTGTGGTGAATTTCCCTATTTGGTGCTCGTCAAATCAACCATCTGCACTACCGTCGC TGCTGCGCTTTATAAAGCAACTTTCTCCAAAGATTGTGGTGTCTTTGGACCGAGGGTGTGACAGAAGTGACCTTCCATTCCCACAACATATCCTCCATGC CCTCCAATCCTATACACACCTATTGGAATCATTGGATGCTGTTAATGCAACTACGGATGATGTGAACAAGATTGAGAGGTTTTTGCTCCAGCCTAGGATT GAAAGTACTGTGCTGGGGCGTCTTCGTGCTACAGACAAAATGCCAAATTGGAAGACAATCTTTGCATCTGCCGGGTTTTCTCCCGTAACTTTCAGTAACT TCACCGAAACTCAGGCAGAATGTGTGGTGAAGAGGACTCCAGTGAGGGGATTTCACGTGGAAAGGCAGCAGGCTTTGCTTGTGCTTTTTTGGCAGCGTAG AGAGCTTATGTCAGCTTCAGCATGGAGATGCTGA
AA sequence Show only first row Show all	>Potri.003G110800.2 pacid=42784718 polypeptide=Potri.003G110800.2.p locus=Potri.003G110800 ID=Potri.003G110800.2.v4.1 annot-version=v4.1 MPFRLQAKGGVDFDGFASVCSQQETWTQRQRQQLLEVNCFASKEPNSVLHMRRSPSPPTSVSTLSSSSNGGAGGNTSDKTATITATDKVVNPVNNERKDE WATELQPFPSGLEFVSTGERCGLGLEDWENMLSEPSQEQSLLRWIAGDVDDTQFGLKQLLQSGSSQLEFDGNVGGGSGVGGLGIVDQGPGFESLSGIPGG VSSIGTNLAPFPGPGVSNIGSGLVAPSSSSGLINYKNVGFGSNNNSSVQSPVFSSPTNSVSLPFSLPPGMVYHQNQLQQIEAPEEKPHILNPQILMNQQQ SHNPRIRNPNLFLQLPFYQQENRPLHSQLKRHNSGGIDPISHVIPKLPFSDPGQELLLRKHQQQQLGFPQRVQFLHQQLQQKPLVVKKEDLGTQHYQHQH QHQHQHQHQHQHALLDQLYKAAELVGTGNFSHAQGILARLNQQLFPTGKPLHRAAFYFKEALQLLILMNNNSVTAPPPRSPTPFDVIFKMSAYKVLSEVS PLIQFVNFTCNQALLEAVDDADRIHIVDFDIGFGAQWASFMQELPRNRGGRSLKTTAFASPSTHHPVELSLMRDNLTQFANEIGLSFELDVINFDSLEQH CYSLPFFRTSEHEAVVVNFPIWCSSNQPSALPSLLRFIKQLSPKIVVSLDRGCDRSDLPFPQHILHALQSYTHLLESLDAVNATTDDVNKIERFLLQPRI ESTVLGRLRATDKMPNWKTIFASAGFSPVTFSNFTETQAECVVKRTPVRGFHVERQQALLVLFWQRRELMSASAWRC

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DESeq2's median of ratios [POPLAR]

Mapped by: StringTie Salmon Order by: Tissue Experiment Show only core collection Show again Show schematic diagram

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Coexpressed genes

Compare expression of checked genes Schematic diagram [FLAX] Schematic diagram [POPLAR]

*If you select 4 or less genes and then press "compare expression", expression will be shown as a graph. If you select more than 4 genes, expresion will be shown as a heat map.
*Color represents relative expression level among samples for each gene.

At best	At TF class	At alias	At description		Locus	MR	r	Symbol	NWA:WT	NWB:WT	NWA:OE-ARK2	NWB:OE-ARK2	NWA:miRNA-ARK2	NWB:miRNA-ARK2	NW 0hr	WT H20	WT-NW	TUA1dEY NW	TUA1dEY+TUB15 NW	TUA1dY+TUB9 NW	Pde NW	NWA:WT GA	NWBWT GA	TW:WT	TW:WT GA	NWA:OE-ARK2 GA	NWB:OE-ARK2 GA	TW:OE-ARK2	TW:OE-ARK2 GA	NWA:miRNA-ARK2 GA	NWB:miRNA-ARK2 GA	TW:miRNA-ARK2	TW:miRNA-ARK2 GA	TW 2hr	TW 8hr	TW 24hr	TW 48hr	TW 96hr	TW 336hr	WT ACC	35S::etr1-1 H20	35S::etr1-1 ACC	LMX5::etr1-1 H20	LMX5::etr1-1 ACC	WT-TW	TUA1dEY TW	TUA1dEY+TUB15 TW	TUA1dY+TUB9 TW	Pde TW	OW:WT	OW:WT GA	OW:OE-ARK2	OW:OE-ARK2 GA	OW:miRNA-ARK2	OW:miRNA-ARK2 GA	OW 2hr	OW 8hr	OW 24hr	OW 48hr	OW 96hr	OW 336hr	Root CTR	Root LongCold	Root LongDrougt	Root LongHeat	Root LongSalt	Root ShortCold	Root ShortDrougt	Root ShortHeat	Root ShortSalt	Ptr root	Leaf CTR	Leaf LongCold	Leaf LongDrougt	Leaf LongHeat	Leaf LongSalt	Leaf ShortCold	Leaf ShortDrougt	Leaf ShortHeat	Leaf ShortSalt	Ptr leaf	Stem CTR	Stem LongCold	Stem LongDrougt	Stem LongHeat	Stem LongSalt	Stem ShortCold	Stem ShortDrougt	Stem ShortHeat	Stem ShortSalt	Ptr shoot	Ptr xylem	Ptr phloem	Ptr fiber	Ptr vessel	Ptr fiber vessel ray
AT4G00150	GRAS	ATHAM3, SCL6, L...	LOST MERISTEMS 3, ARABIDOPSIS ...		Potri.003G110800 [exp]	0	1
AT1G19880			Regulator of chromosome conden...		Potri.002G026600 [exp]	8.77	0.8132
AT4G02460		PMS1	POSTMEIOTIC SEGREGATION 1, DNA...		Potri.014G130800 [exp]	9.38	0.8281
AT2G25737			Sulfite exporter TauE/SafE fam...		Potri.001G182700 [exp]	9.48	0.8298
AT1G77470		EMB2810, RFC5, ...	replication factor C 5, EMBRYO...		Potri.002G081200 [exp]	10.48	0.8144
AT2G15790		CYP40, SQN	SQUINT, CYCLOPHILIN 40, peptid...		Potri.004G144300 [exp]	16.70	0.8276	SQN.2
AT5G11460			Protein of unknown function (D...		Potri.001G179700 [exp]	33.09	0.7729
AT1G67720			Leucine-rich repeat protein ki...		Potri.010G052800 [exp]	36.11	0.8181
AT3G13690			Protein kinase protein with ad...		Potri.006G150100 [exp]	38.88	0.8006
AT4G32180		ATPANK2	pantothenate kinase 2 (.1.2.3)		Potri.015G077300 [exp]	44.58	0.8202
AT5G63960		EMB2780	DNA binding;nucleotide binding...		Potri.005G065800 [exp]	48.20	0.7491

Compare expression of checked genes

Potri.003G110800 coexpression network

*The number of genes in the network is adjusted within 50 genes.
*Gene name represents symbol(s) of closest Arabidopsis gene if symbol(s) for the gene itself doesn't exist.
*Circle diameter represents the number of connection with other genes within this network.
*Color for gene name represents subnetwork based on the result of network clustering.