Plant FIBer expression Database

External link	JGI Phytozome v13 [genome browser] Popgenie AspWood
Symbol	Pt-SKU5.1
Arabidopsis homologues Show only best Show top 10	Locus ID BLAST score/e-value TF class Alias TAIR10 short description AT4G12420 933 / 0 SKU5 Cupredoxin superfamily protein (.1.2) AT4G25240 792 / 0 SKS1 SKU5 similar 1 (.1) AT5G51480 785 / 0 SKS2 SKU5 similar 2 (.1) AT5G48450 692 / 0 SKS3 SKU5 similar 3 (.1) AT4G22010 512 / 3e-177 SKS4 SKU5 similar 4 (.1) AT1G76160 510 / 2e-176 SKS5 SKU5 similar 5 (.1) AT1G55570 509 / 1e-175 SKS12 SKU5 similar 12 (.1) AT1G21860 507 / 3e-175 SKS7 SKU5 similar 7 (.1) AT1G21850 507 / 8e-175 SKS8 SKU5 similar 8 (.1) AT1G41830 503 / 2e-173 SKS6 SKU5 SIMILAR 6, SKU5-similar 6 (.1)
Paralogs Show only best Show top 10	Gene ID BLAST score/e-value At best hit BLAST score/e-value TAIR10 short description Potri.001G120300 [exp] 1111 / 0 AT4G12420 930 / 0.0 Cupredoxin superfamily protein (.1.2) Potri.015G127200 [exp] 846 / 0 AT4G25240 882 / 0.0 SKU5 similar 1 (.1) Potri.012G126400 [exp] 842 / 0 AT4G25240 883 / 0.0 SKU5 similar 1 (.1) Potri.014G177700 [exp] 759 / 0 AT5G48450 885 / 0.0 SKU5 similar 3 (.1) Potri.005G247700 [exp] 535 / 0 AT1G76160 878 / 0.0 SKU5 similar 5 (.1) Potri.002G227600 [exp] 530 / 0 AT1G76160 794 / 0.0 SKU5 similar 5 (.1) Potri.004G180500 [exp] 528 / 0 AT1G76160 880 / 0.0 SKU5 similar 5 (.1) Potri.002G013700 [exp] 525 / 0 AT1G76160 902 / 0.0 SKU5 similar 5 (.1) Potri.014G154500 [exp] 519 / 6e-180 AT4G22010 780 / 0.0 SKU5 similar 4 (.1)
Flax homologues Show only best Show top 10	Locus ID BLAST score/e-value At best hit BLAST score/e-value TAIR10 short description Lus10028921 [exp] 1026 / 0 AT4G12420 975 / 0.0 Cupredoxin superfamily protein (.1.2) Lus10004339 [exp] 1026 / 0 AT4G12420 979 / 0.0 Cupredoxin superfamily protein (.1.2) Lus10032241 [exp] 989 / 0 AT4G12420 950 / 0.0 Cupredoxin superfamily protein (.1.2) Lus10024604 [exp] 983 / 0 AT4G12420 941 / 0.0 Cupredoxin superfamily protein (.1.2) Lus10031722 [exp] 797 / 0 AT4G25240 897 / 0.0 SKU5 similar 1 (.1) Lus10031143 [exp] 796 / 0 AT4G25240 898 / 0.0 SKU5 similar 1 (.1) Lus10038920 [exp] 778 / 0 AT5G51480 851 / 0.0 SKU5 similar 2 (.1) Lus10027207 [exp] 774 / 0 AT5G51480 840 / 0.0 SKU5 similar 2 (.1) Lus10025860 [exp] 757 / 0 AT5G48450 882 / 0.0 SKU5 similar 3 (.1) Lus10038239 [exp] 753 / 0 AT5G48450 858 / 0.0 SKU5 similar 3 (.1)
PFAM info	Clan ID Clan name Pfam ID Pfam name Pfam description CL0026 [poplar] [flax] CU_oxidase PF00394 [poplar] [flax] Cu-oxidase Multicopper oxidase CL0026 [poplar] [flax] CU_oxidase PF07731 [poplar] [flax] Cu-oxidase_2 Multicopper oxidase CL0026 [poplar] [flax] CU_oxidase PF07732 [poplar] [flax] Cu-oxidase_3 Multicopper oxidase
Representative CDS sequence Show only first row Show all	>Potri.003G112700.1 pacid=42784895 polypeptide=Potri.003G112700.1.p locus=Potri.003G112700 ID=Potri.003G112700.1.v4.1 annot-version=v4.1 ATGGCTTTGTGTAGCAAGTTTTTAGCTTTGTTTCTTATCCACACTTGCTTGCTTTTGGGCTTGTGTTCAGCTGCAGATCCTTTTGTTAGCTATGACTTTG AAGTCTCTTACATCACTGCTTCTCCTCTTGGCGTGCCTCAACAGGTTATTGCTATAAATGGGAAGTTTCCTGGTCCTACTATCAATGTGACCACTAACAA CAATGTTGCTATCAATGTTCGGAACAAACTGGATGATAATCTCCTTATCCACTGGTCTGGAATTCAACAAAGGAGAAGTTCATGGCAAGATGGGCTTCCT GGTACTAACTGTCCAATTCCTCCGAAGTGGAACTGGACTTACCAGTTTCAAGTTAAAGATCAGGTAGGGAGTTTCTTTTACTTCCCTTCTCTCCATATGC AGAGAGCTTCTGGTGGATTTGGCAGCTTTATCATAAACAACCGGGCTATTATTCCAATTCCTTTTGATACTCCTCATGGGGACATTGTCATTTTGATTGG TGATTGGTACAAAAGGAACCACACGGCTTTGAGGAAGGCTCTTGATGCTGGGAAAGATCTAGGGATGCCAGATGGAGTTCTTATTAATGGCAAAGGTCCT TACCAATATAACGCTACACTTGTCCCTGATGGCATTGACTACGAAACCATTGAGGTTCAACCAGGAAAAACCTATCGCATCCGTGTGCACAATGTTGGAA CTTCAACTAGTTTGAATTTCAGGATCCAGAACCACAATCTGCTCTTAGCTGAGTCAGAGGGATCTTATACAGTGCAACAAAATTATACCAGTTTAGATAT ACATGTAGGACAATCTTATTCATTTTTGGTGACCATGGATCAGAACGCAAGTACTGATTACTACATTGTAGCTAGCGCAAGGTTTGTGAATGAATCGCAG TGGAAAAGGGTTACTGGTGTTGGAATCTTGCATTACACAAATTCCAAGGGGAAGGCAAAGGGTCCCCTTCCAGATGCACCCAATGATGAGTTTGACAAAA CCTTCTCAATGAACCAAGCAAGATCCATCAGATGGAATGTTTCTGCGAGTGGTGCACGTCCCAACCCACAAGGCTCATTCAGATACGGCTCAATCAATGT GACCGATGTTTACGTATTGAAAAATAAGCCACTAGTAACAATCAATGGGAAAAGACGAGCGACTCTCAGTGGGATATCATTTGTCAATCCTGCTACTCCA ATCAGGCTTGCAGACCAGTTCAAAGTGAAGGGGGTGTATAAGCTTGATTTCCCCAACAAGCCCTTAACAGGATCATCTAAAATGGAAACATCAGTGATCA ATGGAACATACAGGGGATTTATGGAAGTCATTCTGCAGAACAATGACACCAAGATGCAGAGCTATCACCTAAGTGGATATGCAGTTTTTGTTGTGGGGAT GGATTATGGTGAATGGACAGATAACAGCAGGGGAACATATAATAAGTGGGATGGCATTGCACGCTCCACTGTCCAGGTTTATCCTGGAGCATGGACAGCA ATTTTGGTATCGCTTGACAATGTTGGAGTCTGGAACCTCAGAACTGAAAACCTTGACTCCTGGTATCTTGGCCAGGAAACGTATGTCAGAATTGTCAATC CAGAGGAAACTAACAAAACCGAGTTGCCTATTCCAGACAATGCCCTCTTTTGTGGTGCACTTGGCAAATTCCAGAAGCCAGAAGATATTTCTTTCGCCGT ATCAATCACAGGTAACGGATCAAAGCTGTTCTTCACCCTGCTGATGGCCGTCTGTGCTTTGATGTCCGTTTTTGGCTGA
AA sequence Show only first row Show all	>Potri.003G112700.1 pacid=42784895 polypeptide=Potri.003G112700.1.p locus=Potri.003G112700 ID=Potri.003G112700.1.v4.1 annot-version=v4.1 MALCSKFLALFLIHTCLLLGLCSAADPFVSYDFEVSYITASPLGVPQQVIAINGKFPGPTINVTTNNNVAINVRNKLDDNLLIHWSGIQQRRSSWQDGLP GTNCPIPPKWNWTYQFQVKDQVGSFFYFPSLHMQRASGGFGSFIINNRAIIPIPFDTPHGDIVILIGDWYKRNHTALRKALDAGKDLGMPDGVLINGKGP YQYNATLVPDGIDYETIEVQPGKTYRIRVHNVGTSTSLNFRIQNHNLLLAESEGSYTVQQNYTSLDIHVGQSYSFLVTMDQNASTDYYIVASARFVNESQ WKRVTGVGILHYTNSKGKAKGPLPDAPNDEFDKTFSMNQARSIRWNVSASGARPNPQGSFRYGSINVTDVYVLKNKPLVTINGKRRATLSGISFVNPATP IRLADQFKVKGVYKLDFPNKPLTGSSKMETSVINGTYRGFMEVILQNNDTKMQSYHLSGYAVFVVGMDYGEWTDNSRGTYNKWDGIARSTVQVYPGAWTA ILVSLDNVGVWNLRTENLDSWYLGQETYVRIVNPEETNKTELPIPDNALFCGALGKFQKPEDISFAVSITGNGSKLFFTLLMAVCALMSVFG

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DESeq2's median of ratios [POPLAR]

Mapped by: StringTie Salmon Order by: Tissue Experiment Show only core collection Show again Show schematic diagram

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Coexpressed genes

Compare expression of checked genes Schematic diagram [FLAX] Schematic diagram [POPLAR]

*If you select 4 or less genes and then press "compare expression", expression will be shown as a graph. If you select more than 4 genes, expresion will be shown as a heat map.
*Color represents relative expression level among samples for each gene.

At best	At TF class	At alias	At description		Locus	MR	r	Symbol	NWA:WT	NWB:WT	NWA:OE-ARK2	NWB:OE-ARK2	NWA:miRNA-ARK2	NWB:miRNA-ARK2	NW 0hr	WT H20	WT-NW	TUA1dEY NW	TUA1dEY+TUB15 NW	TUA1dY+TUB9 NW	Pde NW	NWA:WT GA	NWBWT GA	TW:WT	TW:WT GA	NWA:OE-ARK2 GA	NWB:OE-ARK2 GA	TW:OE-ARK2	TW:OE-ARK2 GA	NWA:miRNA-ARK2 GA	NWB:miRNA-ARK2 GA	TW:miRNA-ARK2	TW:miRNA-ARK2 GA	TW 2hr	TW 8hr	TW 24hr	TW 48hr	TW 96hr	TW 336hr	WT ACC	35S::etr1-1 H20	35S::etr1-1 ACC	LMX5::etr1-1 H20	LMX5::etr1-1 ACC	WT-TW	TUA1dEY TW	TUA1dEY+TUB15 TW	TUA1dY+TUB9 TW	Pde TW	OW:WT	OW:WT GA	OW:OE-ARK2	OW:OE-ARK2 GA	OW:miRNA-ARK2	OW:miRNA-ARK2 GA	OW 2hr	OW 8hr	OW 24hr	OW 48hr	OW 96hr	OW 336hr	Root CTR	Root LongCold	Root LongDrougt	Root LongHeat	Root LongSalt	Root ShortCold	Root ShortDrougt	Root ShortHeat	Root ShortSalt	Ptr root	Leaf CTR	Leaf LongCold	Leaf LongDrougt	Leaf LongHeat	Leaf LongSalt	Leaf ShortCold	Leaf ShortDrougt	Leaf ShortHeat	Leaf ShortSalt	Ptr leaf	Stem CTR	Stem LongCold	Stem LongDrougt	Stem LongHeat	Stem LongSalt	Stem ShortCold	Stem ShortDrougt	Stem ShortHeat	Stem ShortSalt	Ptr shoot	Ptr xylem	Ptr phloem	Ptr fiber	Ptr vessel	Ptr fiber vessel ray
AT4G12420		SKU5	Cupredoxin superfamily protein...		Potri.003G112700 [exp]	0	1	Pt-SKU5.1
AT5G04160			Nucleotide-sugar transporter f...		Potri.006G046600 [exp]	1.41	0.9596
AT1G23790			Plant protein of unknown funct...		Potri.008G192300 [exp]	2.44	0.9536
AT3G12110		ACT11	actin-11 (.1)		Potri.006G192700 [exp]	3.00	0.9503	Pt-ACT2.4
AT2G45470		AGP8, FLA8	FASCICLIN-like arabinogalactan...		Potri.014G071700 [exp]	3.16	0.9498	Pt-FLA8.1
AT4G08685		SAH7	Pollen Ole e 1 allergen and ex...		Potri.002G093100 [exp]	4.24	0.9497	Pt-SAH7.1
AT5G15350		AtENODL17	early nodulin-like protein 17 ...		Potri.017G088600 [exp]	5.09	0.9442
AT2G25270			unknown protein		Potri.018G023200 [exp]	5.47	0.9418
AT3G61640		AGP20, ATAGP20	arabinogalactan protein 20 (.1...		Potri.014G094800 [exp]	6.32	0.9468	AGP20.1
AT4G12420		SKU5	Cupredoxin superfamily protein...		Potri.001G120300 [exp]	6.92	0.9444	SKU5.2
AT5G23400			Leucine-rich repeat (LRR) fami...		Potri.007G001000 [exp]	7.07	0.9223

Compare expression of checked genes

Potri.003G112700 coexpression network

*The number of genes in the network is adjusted within 50 genes.
*Gene name represents symbol(s) of closest Arabidopsis gene if symbol(s) for the gene itself doesn't exist.
*Circle diameter represents the number of connection with other genes within this network.
*Color for gene name represents subnetwork based on the result of network clustering.