Plant FIBer expression Database

External link	JGI Phytozome v13 [genome browser] Popgenie AspWood
Symbol	GRAS19
Arabidopsis homologues Show only best Show top 10	Locus ID BLAST score/e-value TF class Alias TAIR10 short description AT1G63100 696 / 0 GRAS GRAS family transcription factor (.1) AT2G01570 240 / 1e-70 GRAS RGA1 REPRESSOR OF GA1-3 1, REPRESSOR OF GA, GRAS family transcription factor family protein (.1) AT1G66350 234 / 3e-69 GRAS RGL1 RGA-like 1 (.1) AT3G54220 237 / 5e-69 GRAS SGR1, SCR SHOOT GRAVITROPISM 1, SCARECROW, GRAS family transcription factor (.1) AT1G14920 231 / 1e-67 GRAS RGA2, GAI RESTORATION ON GROWTH ON AMMONIA 2, GIBBERELLIC ACID INSENSITIVE, GRAS family transcription factor family protein (.1) AT1G50420 227 / 1e-66 GRAS SCL-3, SCL3 scarecrow-like 3 (.1) AT3G03450 223 / 8e-65 GRAS RGL2 RGA-like 2 (.1) AT5G17490 222 / 2e-64 GRAS AtRGL3, RGL3 RGA-like protein 3 (.1) AT5G41920 207 / 3e-60 GRAS GRAS family transcription factor (.1) AT1G55580 197 / 3e-56 GRAS SCL18, LAS SCARECROW-LIKE 18, Lateral Suppressor, GRAS family transcription factor (.1)
Paralogs Show only best Show top 10	Gene ID BLAST score/e-value At best hit BLAST score/e-value TAIR10 short description Potri.001G109400 [exp] 1183 / 0 AT1G63100 711 / 0.0 GRAS family transcription factor (.1) Potri.001G326000 [exp] 276 / 3e-83 AT1G66350 296 / 2e-92 RGA-like 1 (.1) Potri.010G110700 [exp] 245 / 2e-72 AT2G01570 764 / 0.0 REPRESSOR OF GA1-3 1, REPRESSOR OF GA, GRAS family transcription factor family protein (.1) Potri.003G202100 [exp] 236 / 2e-70 AT1G50420 568 / 0.0 scarecrow-like 3 (.1) Potri.008G131700 [exp] 239 / 3e-70 AT2G01570 781 / 0.0 REPRESSOR OF GA1-3 1, REPRESSOR OF GA, GRAS family transcription factor family protein (.1) Potri.001G023500 [exp] 234 / 1e-69 AT1G50420 600 / 0.0 scarecrow-like 3 (.1) Potri.017G125200 [exp] 236 / 7e-69 AT2G01570 701 / 0.0 REPRESSOR OF GA1-3 1, REPRESSOR OF GA, GRAS family transcription factor family protein (.1) Potri.005G226800 [exp] 233 / 1e-68 AT3G54220 424 / 3e-142 SHOOT GRAVITROPISM 1, SCARECROW, GRAS family transcription factor (.1) Potri.006G114200 [exp] 239 / 3e-68 AT3G54220 639 / 0.0 SHOOT GRAVITROPISM 1, SCARECROW, GRAS family transcription factor (.1)
Flax homologues Show only best Show top 10	Locus ID BLAST score/e-value At best hit BLAST score/e-value TAIR10 short description Lus10029592 [exp] 902 / 0 AT1G63100 669 / 0.0 GRAS family transcription factor (.1) Lus10006322 [exp] 762 / 0 AT1G63100 588 / 0.0 GRAS family transcription factor (.1) Lus10041540 [exp] 286 / 1e-86 AT1G66350 317 / 2e-100 RGA-like 1 (.1) Lus10012554 [exp] 286 / 6e-86 AT1G66350 318 / 1e-99 RGA-like 1 (.1) Lus10033583 [exp] 236 / 4e-69 AT2G01570 681 / 0.0 REPRESSOR OF GA1-3 1, REPRESSOR OF GA, GRAS family transcription factor family protein (.1) Lus10022418 [exp] 232 / 4e-69 AT1G50420 592 / 0.0 scarecrow-like 3 (.1) Lus10040734 [exp] 238 / 8e-69 AT5G41920 410 / 1e-137 GRAS family transcription factor (.1) Lus10033912 [exp] 234 / 8e-69 AT3G54220 414 / 6e-138 SHOOT GRAVITROPISM 1, SCARECROW, GRAS family transcription factor (.1) Lus10017626 [exp] 235 / 1e-68 AT2G01570 679 / 0.0 REPRESSOR OF GA1-3 1, REPRESSOR OF GA, GRAS family transcription factor family protein (.1) Lus10016496 [exp] 234 / 2e-67 AT3G54220 663 / 0.0 SHOOT GRAVITROPISM 1, SCARECROW, GRAS family transcription factor (.1)
PFAM info	Clan ID Clan name Pfam ID Pfam name Pfam description CL0063 [poplar] [flax] NADP_Rossmann PF03514 [poplar] [flax] GRAS GRAS domain family
Representative CDS sequence Show only first row Show all	>Potri.003G122400.1 pacid=42786774 polypeptide=Potri.003G122400.1.p locus=Potri.003G122400 ID=Potri.003G122400.1.v4.1 annot-version=v4.1 ATGTTGGCCGGGTGTTCTAGTTCAACATTGCTGTCACCAAGGCATAGATTGAGGAGTGAATCACCTGCGCAGTTTCAAGCTTGCCATTATCAGTTACCTT CAATGAGCACACAGAGATTGGACTTGCCATGTACTTTCTCTCGCAAAGAATCATCGCGGTCGCAGCCAATGAGGCCTGTTGGTGTTGGCTTGGCTGTGGA CAAATCACTTGAGTCCAAGACCAGCAGTTGCTCTCTCATGCAGAATATCAGGCTCCCACCATTGGCAACTAGCAATCAATCAGTGAAAGATGAGTTTTGG GAGAAGGGTAAGAGCTTGAAGAGGTTTGCCGAGCAATCAGTTGATGAGTCTAGCTTTAACAGGGCTAAGAGAAAAAAGGGTAACAATGATAACGGTAAAT CTGATGATATTTGCGAAGGTGATAGTTTGAGTTTAGGCCAGTTGGGTAGTGGCAATTCTTGGTTTCAACCAAGTTTGGAGGTGCCTAGAAGCCTAAACCC TCAACAATTTCCTTTCTCTTTGACTTTTTCAGGAGATGAGGAGAGGGTTTGCTTTGTGCCCAGTGAAGTGATTTCACCGCCTTTGCCATTGTCTAACAAT CCATGGGTGGACTCTGTTATAACTGAGATCGCTGACCTGGGTGAAAAATATGGAGAGAGTAGCCAAAGGCCAGTAAAAGAAGCCTCGGGTTCAAGTACTT CATCAGAGAGTCAAAGCTTGGGCCTTAGACTAAGCGAGAACGTAGTGGAGCACGAAGTGGGTAAGGGCTCTAGCAATCCTCCTCATCCACAAGAAGGCGC GGTGGAGGCTGCAGAGGATGATCAGAGAGAGCATCAGGGGTTTGAGCTGGTCAGCTTTCTTACAGCTTGTGTTGAAGAGATTGGGTTAAAGAATATTGCT AGTATCAACCATTTTATAGCTAAACTGGGGGAGCTTGCTTCCCCCAAAGGAATTCCTATTAGCCGCCTTGCTGCTTATTATACCGAGGCATTAGCTCTTA GAGTTACAAGGATTTGGCCTCACATTTTTCATATAACTGCTCCCCGGGAACTTGATCGGGTTGATGATGATTCAGGGACTGCATTGAGGCTTTTGAATCA AGTGAGCCCAATTCCGAAGTTCATTCATTTCACGGCGAATGAGATGTTGTTGAGGGCTTTTGAAGGGAAAGATAGGGTCCACATTATAGATTTTGACATT AGGCAAGGGCTTCAATGGCCTAGTTTGTTTCAGAGTTTGGCCTCCAGGACTAATCCTCCTAGCCATGTTAGAATCACTGGTATAGGTGAGTCTAAGCAAG AGCTTAATGAGACAGGAGATAGGCTTGCTGGATTTGCTGAGGCATTGAACCTGCCTTTCGAGTTTCATCCAGTTGTGGACAGGTTAGAAGATGTGAGGTT GTGGATGCTCCATGTGAAGGAGAGGGAGTGTGTGGCTATTAATTGTATTTTCCAAATGCACAAGACACTATATGATGGGAGTGGAGGAGCACTGAGGGAT TTCTTGGGGCTTATCCGGAGTACAAACCCCACAATAGTCCTTCTGGCAGAGCAAGAAGCGGAACATAATGCCCCTAATTTGGAAACAAGAGTTTGCAATT CGTTGAAGTACTACTCTGCTATTTTTGACTCGATTGATTCTAGCCTTCCATTTAACAGCCCAGTTAGGATCAAATTAGAGGAGATGTATGCTCGGGAAAT TAGAAACGTTGTTGCTTGTGAAGGAAGTGACCGGCATGAAAGACATGAAAGTTTTGACAAGTGGAAGAAGTTGATGGAGCAAGGAGGGCTCCGGTGCGTG GGAATCGATGAGAGGGAGATGCTTCAAGCCCAAATGCTATTGAAGATGTACTCTTGTGATAGTTACAAAGTTAAGAAACAAGGGCACGAGGAAGCAGCGC TTACTCTAAGTTGGTTAGATCAACCTCTCTACACAGTCTCGGCGTGGACACCTTTAGACATTGCAGGGAGTTCAACCTCTTTTTCTCAGCCACCTTGA
AA sequence Show only first row Show all	>Potri.003G122400.1 pacid=42786774 polypeptide=Potri.003G122400.1.p locus=Potri.003G122400 ID=Potri.003G122400.1.v4.1 annot-version=v4.1 MLAGCSSSTLLSPRHRLRSESPAQFQACHYQLPSMSTQRLDLPCTFSRKESSRSQPMRPVGVGLAVDKSLESKTSSCSLMQNIRLPPLATSNQSVKDEFW EKGKSLKRFAEQSVDESSFNRAKRKKGNNDNGKSDDICEGDSLSLGQLGSGNSWFQPSLEVPRSLNPQQFPFSLTFSGDEERVCFVPSEVISPPLPLSNN PWVDSVITEIADLGEKYGESSQRPVKEASGSSTSSESQSLGLRLSENVVEHEVGKGSSNPPHPQEGAVEAAEDDQREHQGFELVSFLTACVEEIGLKNIA SINHFIAKLGELASPKGIPISRLAAYYTEALALRVTRIWPHIFHITAPRELDRVDDDSGTALRLLNQVSPIPKFIHFTANEMLLRAFEGKDRVHIIDFDI RQGLQWPSLFQSLASRTNPPSHVRITGIGESKQELNETGDRLAGFAEALNLPFEFHPVVDRLEDVRLWMLHVKERECVAINCIFQMHKTLYDGSGGALRD FLGLIRSTNPTIVLLAEQEAEHNAPNLETRVCNSLKYYSAIFDSIDSSLPFNSPVRIKLEEMYAREIRNVVACEGSDRHERHESFDKWKKLMEQGGLRCV GIDEREMLQAQMLLKMYSCDSYKVKKQGHEEAALTLSWLDQPLYTVSAWTPLDIAGSSTSFSQPP

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DESeq2's median of ratios [POPLAR]

Mapped by: StringTie Salmon Order by: Tissue Experiment Show only core collection Show again Show schematic diagram

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Coexpressed genes

Compare expression of checked genes Schematic diagram [FLAX] Schematic diagram [POPLAR]

*If you select 4 or less genes and then press "compare expression", expression will be shown as a graph. If you select more than 4 genes, expresion will be shown as a heat map.
*Color represents relative expression level among samples for each gene.

At best	At TF class	At alias	At description		Locus	MR	r	Symbol	NWA:WT	NWB:WT	NWA:OE-ARK2	NWB:OE-ARK2	NWA:miRNA-ARK2	NWB:miRNA-ARK2	NW 0hr	WT H20	WT-NW	TUA1dEY NW	TUA1dEY+TUB15 NW	TUA1dY+TUB9 NW	Pde NW	NWA:WT GA	NWBWT GA	TW:WT	TW:WT GA	NWA:OE-ARK2 GA	NWB:OE-ARK2 GA	TW:OE-ARK2	TW:OE-ARK2 GA	NWA:miRNA-ARK2 GA	NWB:miRNA-ARK2 GA	TW:miRNA-ARK2	TW:miRNA-ARK2 GA	TW 2hr	TW 8hr	TW 24hr	TW 48hr	TW 96hr	TW 336hr	WT ACC	35S::etr1-1 H20	35S::etr1-1 ACC	LMX5::etr1-1 H20	LMX5::etr1-1 ACC	WT-TW	TUA1dEY TW	TUA1dEY+TUB15 TW	TUA1dY+TUB9 TW	Pde TW	OW:WT	OW:WT GA	OW:OE-ARK2	OW:OE-ARK2 GA	OW:miRNA-ARK2	OW:miRNA-ARK2 GA	OW 2hr	OW 8hr	OW 24hr	OW 48hr	OW 96hr	OW 336hr	Root CTR	Root LongCold	Root LongDrougt	Root LongHeat	Root LongSalt	Root ShortCold	Root ShortDrougt	Root ShortHeat	Root ShortSalt	Ptr root	Leaf CTR	Leaf LongCold	Leaf LongDrougt	Leaf LongHeat	Leaf LongSalt	Leaf ShortCold	Leaf ShortDrougt	Leaf ShortHeat	Leaf ShortSalt	Ptr leaf	Stem CTR	Stem LongCold	Stem LongDrougt	Stem LongHeat	Stem LongSalt	Stem ShortCold	Stem ShortDrougt	Stem ShortHeat	Stem ShortSalt	Ptr shoot	Ptr xylem	Ptr phloem	Ptr fiber	Ptr vessel	Ptr fiber vessel ray
AT1G63100	GRAS		GRAS family transcription fact...		Potri.003G122400 [exp]	0	1	GRAS19
AT1G63100	GRAS		GRAS family transcription fact...		Potri.001G109400 [exp]	2.44	0.9588
AT2G16270			unknown protein		Potri.001G289100 [exp]	3.00	0.9690
AT3G15550			unknown protein		Potri.003G058600 [exp]	5.65	0.9622
AT5G03870			Glutaredoxin family protein (....		Potri.006G212700 [exp]	6.24	0.9650
AT5G15510			TPX2 (targeting protein for Xk...		Potri.004G118700 [exp]	8.12	0.9657
AT4G14330			P-loop containing nucleoside t...		Potri.008G169000 [exp]	8.66	0.9604
AT3G15550			unknown protein		Potri.001G175500 [exp]	15.29	0.9542
AT2G16270			unknown protein		Potri.009G084400 [exp]	15.42	0.9587
AT5G01420			Glutaredoxin family protein (....		Potri.008G016100 [exp]	17.49	0.9459
AT4G02800			unknown protein		Potri.005G209400 [exp]	17.66	0.9546

Compare expression of checked genes

Potri.003G122400 coexpression network

*The number of genes in the network is adjusted within 50 genes.
*Gene name represents symbol(s) of closest Arabidopsis gene if symbol(s) for the gene itself doesn't exist.
*Circle diameter represents the number of connection with other genes within this network.
*Color for gene name represents subnetwork based on the result of network clustering.