Plant FIBer expression Database

External link	JGI Phytozome v13 [genome browser] Popgenie AspWood
Symbol
Arabidopsis homologues Show only best Show top 10	Locus ID BLAST score/e-value TF class Alias TAIR10 short description AT1G63160 588 / 0 EMB2811, RFC2 EMBRYO DEFECTIVE 2811, replication factor C 2 (.1) AT1G21690 209 / 2e-65 RFC4, EMB1968 replication factor C 4, embryo defective 1968, ATPase family associated with various cellular activities (AAA) AT1G77470 203 / 1e-62 EMB2810, RFC5, RFC3 replication factor C 5, EMBRYO DEFECTIVE 2810, replication factor C subunit 3 (.1) AT5G27740 115 / 2e-29 RFC3, EMB251, EMB161, EMB2775 replication factor C 3, EMBRYO DEFECTIVE 2775, EMBRYO DEFECTIVE 251, EMBRYO DEFECTIVE 161, ATPase family associated with various cellular activities (AAA) (.1) AT5G22010 66 / 2e-11 ATRFC1 replication factor C 1, replication factor C1 (.1) AT1G14460 63 / 1e-10 AAA-type ATPase family protein (.1) AT2G02480 61 / 7e-10 STI STICHEL, AAA-type ATPase family protein (.1) AT5G45720 57 / 1e-08 AAA-type ATPase family protein (.1.2) AT1G24290 56 / 1e-08 AAA-type ATPase family protein (.1) AT4G18820 52 / 5e-07 AAA-type ATPase family protein (.1)
Paralogs Show only best Show top 10	Gene ID BLAST score/e-value At best hit BLAST score/e-value TAIR10 short description Potri.002G081200 [exp] 206 / 1e-63 AT1G77470 577 / 0.0 replication factor C 5, EMBRYO DEFECTIVE 2810, replication factor C subunit 3 (.1) Potri.005G181300 [exp] 199 / 2e-61 AT1G21690 551 / 0.0 replication factor C 4, embryo defective 1968, ATPase family associated with various cellular activities (AAA) Potri.002G080100 [exp] 159 / 2e-45 AT1G21690 505 / 1e-180 replication factor C 4, embryo defective 1968, ATPase family associated with various cellular activities (AAA) Potri.019G040000 [exp] 107 / 3e-26 AT5G27740 621 / 0.0 replication factor C 3, EMBRYO DEFECTIVE 2775, EMBRYO DEFECTIVE 251, EMBRYO DEFECTIVE 161, ATPase family associated with various cellular activities (AAA) (.1) Potri.001G213900 [exp] 69 / 1e-12 AT5G22010 1117 / 0.0 replication factor C 1, replication factor C1 (.1) Potri.003G093400 [exp] 66 / 9e-12 AT5G27740 182 / 2e-53 replication factor C 3, EMBRYO DEFECTIVE 2775, EMBRYO DEFECTIVE 251, EMBRYO DEFECTIVE 161, ATPase family associated with various cellular activities (AAA) (.1) Potri.011G023800 [exp] 63 / 1e-10 AT1G24290 689 / 0.0 AAA-type ATPase family protein (.1) Potri.005G120901 [exp] 60 / 1e-09 AT5G27740 240 / 8e-72 replication factor C 3, EMBRYO DEFECTIVE 2775, EMBRYO DEFECTIVE 251, EMBRYO DEFECTIVE 161, ATPase family associated with various cellular activities (AAA) (.1) Potri.007G022900 [exp] 58 / 5e-09 AT5G27740 261 / 2e-82 replication factor C 3, EMBRYO DEFECTIVE 2775, EMBRYO DEFECTIVE 251, EMBRYO DEFECTIVE 161, ATPase family associated with various cellular activities (AAA) (.1)
Flax homologues Show only best Show top 10	Locus ID BLAST score/e-value At best hit BLAST score/e-value TAIR10 short description Lus10024504 [exp] 603 / 0 AT1G63160 615 / 0.0 EMBRYO DEFECTIVE 2811, replication factor C 2 (.1) Lus10008003 [exp] 593 / 0 AT1G63160 605 / 0.0 EMBRYO DEFECTIVE 2811, replication factor C 2 (.1) Lus10025689 [exp] 215 / 3e-67 AT1G77470 568 / 0.0 replication factor C 5, EMBRYO DEFECTIVE 2810, replication factor C subunit 3 (.1) Lus10018144 [exp] 215 / 4e-67 AT1G77470 564 / 0.0 replication factor C 5, EMBRYO DEFECTIVE 2810, replication factor C subunit 3 (.1) Lus10028543 [exp] 197 / 1e-60 AT1G21690 563 / 0.0 replication factor C 4, embryo defective 1968, ATPase family associated with various cellular activities (AAA) Lus10019391 [exp] 108 / 6e-27 AT5G27740 643 / 0.0 replication factor C 3, EMBRYO DEFECTIVE 2775, EMBRYO DEFECTIVE 251, EMBRYO DEFECTIVE 161, ATPase family associated with various cellular activities (AAA) (.1) Lus10043248 [exp] 92 / 2e-20 AT5G27740 561 / 0.0 replication factor C 3, EMBRYO DEFECTIVE 2775, EMBRYO DEFECTIVE 251, EMBRYO DEFECTIVE 161, ATPase family associated with various cellular activities (AAA) (.1) Lus10013372 [exp] 81 / 1e-16 AT5G22010 1128 / 0.0 replication factor C 1, replication factor C1 (.1) Lus10041764 [exp] 74 / 3e-14 AT5G27740 269 / 3e-84 replication factor C 3, EMBRYO DEFECTIVE 2775, EMBRYO DEFECTIVE 251, EMBRYO DEFECTIVE 161, ATPase family associated with various cellular activities (AAA) (.1) Lus10028316 [exp] 73 / 4e-14 AT5G27740 271 / 6e-86 replication factor C 3, EMBRYO DEFECTIVE 2775, EMBRYO DEFECTIVE 251, EMBRYO DEFECTIVE 161, ATPase family associated with various cellular activities (AAA) (.1)
PFAM info	Clan ID Clan name Pfam ID Pfam name Pfam description CL0023 [poplar] [flax] P-loop_NTPase PF00004 [poplar] [flax] AAA ATPase family associated with various cellular activities (AAA) CL0604 [poplar] [flax] post-AAA PF08542 [poplar] [flax] Rep_fac_C Replication factor C C-terminal domain
Representative CDS sequence Show only first row Show all	>Potri.003G123200.1 pacid=42785358 polypeptide=Potri.003G123200.1.p locus=Potri.003G123200 ID=Potri.003G123200.1.v4.1 annot-version=v4.1 ATGGCATCATCGAGCAACAGCAGTAACTACGACATTCCATGGGTAGAGAAATACAGGCCCAACAAAGTCGCTGACATCGTGGGCAACCAAGACGCCGTCT CTCGCCTCCAAGTCATTGCTCGCGATGGAAACATGCCTAATCTCATTTTAGCCGGTCCTCCTGGAACTGGCAAAACTACAAGTATCTTGGCTCTTGCACA TGAGCTTCTGGGACCAAATTCAAAGGAGGCTGTCTTGGAGCTGAATGCATCAGATGACAGGGGTATAGATGTTGTGAGGAACAAAATTAAGATGTTTGCA CAAAAGAAAGTGACACTGCCTCCTGGACAACACAAAATTGTAATTCTTGATGAAGCTGATAGCATGACATCTGGAGCACAACAAGCCTTGAGACGAACCA TGGAAATATATTCAAATTCCACTCGGTTTGCTCTTGCATGCAACACATCTTCTAAAATTATTGAGCCTATTCAAAGTAGATGTGCCATTGTTCGATTTTC AAGATTATCTGATCAAGAGATACTTGGTCGTCTCATGGTTGTAGTTGGAGCAGAACAGGTCCCTTACGTTCCTGAAGGTCTTGAAGCTATTATATTTACT GCTGATGGAGATATGAGGCAGGCCTTGAACAACTTGCAAGCTACACATAGTGGATTCCATTTTGTCAACCAGGAAAATGTTTTCAAGGTCTGTGATCAGC CTCATCCATTGCATGTGAAGAATATGGTGCGCCAGGTGCTTGAGGGAAAATTTGATGATGCTTGTTCTGGTCTGAAGCATCTCTATGATATGGGCTATTC CCCCACTGACATAATTACAACCCTTTTCCGAATCATAAAGAATTATGATATGGCTGAATATATGAAATTGGAGTTCATGAAGGAAACTGGGTTTGCCCAT ATGAGAATCTGCGATGGTGTTGGTTCGTATCTTCAGCTCTGTGGCCTGTTGGCCAAGCTTGCCTTAGTTCGTGACACAGCCAGAGCAGCATAA
AA sequence Show only first row Show all	>Potri.003G123200.1 pacid=42785358 polypeptide=Potri.003G123200.1.p locus=Potri.003G123200 ID=Potri.003G123200.1.v4.1 annot-version=v4.1 MASSSNSSNYDIPWVEKYRPNKVADIVGNQDAVSRLQVIARDGNMPNLILAGPPGTGKTTSILALAHELLGPNSKEAVLELNASDDRGIDVVRNKIKMFA QKKVTLPPGQHKIVILDEADSMTSGAQQALRRTMEIYSNSTRFALACNTSSKIIEPIQSRCAIVRFSRLSDQEILGRLMVVVGAEQVPYVPEGLEAIIFT ADGDMRQALNNLQATHSGFHFVNQENVFKVCDQPHPLHVKNMVRQVLEGKFDDACSGLKHLYDMGYSPTDIITTLFRIIKNYDMAEYMKLEFMKETGFAH MRICDGVGSYLQLCGLLAKLALVRDTARAA

---

DESeq2's median of ratios [POPLAR]

Mapped by: StringTie Salmon Order by: Tissue Experiment Show only core collection Show again Show schematic diagram

---

Coexpressed genes

Compare expression of checked genes Schematic diagram [FLAX] Schematic diagram [POPLAR]

*If you select 4 or less genes and then press "compare expression", expression will be shown as a graph. If you select more than 4 genes, expresion will be shown as a heat map.
*Color represents relative expression level among samples for each gene.

At best	At TF class	At alias	At description		Locus	MR	r	Symbol	NWA:WT	NWB:WT	NWA:OE-ARK2	NWB:OE-ARK2	NWA:miRNA-ARK2	NWB:miRNA-ARK2	NW 0hr	WT H20	WT-NW	TUA1dEY NW	TUA1dEY+TUB15 NW	TUA1dY+TUB9 NW	Pde NW	NWA:WT GA	NWBWT GA	TW:WT	TW:WT GA	NWA:OE-ARK2 GA	NWB:OE-ARK2 GA	TW:OE-ARK2	TW:OE-ARK2 GA	NWA:miRNA-ARK2 GA	NWB:miRNA-ARK2 GA	TW:miRNA-ARK2	TW:miRNA-ARK2 GA	TW 2hr	TW 8hr	TW 24hr	TW 48hr	TW 96hr	TW 336hr	WT ACC	35S::etr1-1 H20	35S::etr1-1 ACC	LMX5::etr1-1 H20	LMX5::etr1-1 ACC	WT-TW	TUA1dEY TW	TUA1dEY+TUB15 TW	TUA1dY+TUB9 TW	Pde TW	OW:WT	OW:WT GA	OW:OE-ARK2	OW:OE-ARK2 GA	OW:miRNA-ARK2	OW:miRNA-ARK2 GA	OW 2hr	OW 8hr	OW 24hr	OW 48hr	OW 96hr	OW 336hr	Root CTR	Root LongCold	Root LongDrougt	Root LongHeat	Root LongSalt	Root ShortCold	Root ShortDrougt	Root ShortHeat	Root ShortSalt	Ptr root	Leaf CTR	Leaf LongCold	Leaf LongDrougt	Leaf LongHeat	Leaf LongSalt	Leaf ShortCold	Leaf ShortDrougt	Leaf ShortHeat	Leaf ShortSalt	Ptr leaf	Stem CTR	Stem LongCold	Stem LongDrougt	Stem LongHeat	Stem LongSalt	Stem ShortCold	Stem ShortDrougt	Stem ShortHeat	Stem ShortSalt	Ptr shoot	Ptr xylem	Ptr phloem	Ptr fiber	Ptr vessel	Ptr fiber vessel ray
AT1G63160		EMB2811, RFC2	EMBRYO DEFECTIVE 2811, replica...		Potri.003G123200 [exp]	0	1
AT5G57450		ATXRCC3, XRCC3	ARABIDOPSIS THALIANA HOMOLOG O...		Potri.018G093100 [exp]	12.16	0.8360
AT2G25830			YebC-related (.1)		Potri.006G238400 [exp]	13.78	0.8310
AT1G10330			Tetratricopeptide repeat (TPR)...		Potri.012G082900 [exp]	24.73	0.8081
AT2G43950		OEP37, ATOEP37	ARABIDOPSIS CHLOROPLAST OUTER ...		Potri.007G144900 [exp]	31.67	0.7529
AT5G59240			Ribosomal protein S8e family p...		Potri.001G360500 [exp]	38.85	0.7264
AT5G53070			Ribosomal protein L9/RNase H1 ...		Potri.012G121228 [exp]	42.14	0.8043
AT1G07780		TRP6, PAI1	TRANSIENT RECEPTOR POTENTIAL 6...		Potri.008G069500 [exp]	42.44	0.7765	PAI1.1
AT2G35790			unknown protein		Potri.010G219400 [exp]	47.34	0.7638
AT2G39440			unknown protein		Potri.012G120100 [exp]	52.67	0.7729
AT3G29230			Tetratricopeptide repeat (TPR)...		Potri.003G087100 [exp]	55.09	0.7744

Compare expression of checked genes

Potri.003G123200 coexpression network

*The number of genes in the network is adjusted within 50 genes.
*Gene name represents symbol(s) of closest Arabidopsis gene if symbol(s) for the gene itself doesn't exist.
*Circle diameter represents the number of connection with other genes within this network.
*Color for gene name represents subnetwork based on the result of network clustering.