Plant FIBer expression Database

External link	JGI Phytozome v13 [genome browser] Popgenie AspWood
Symbol
Arabidopsis homologues Show only best Show top 10	Locus ID BLAST score/e-value TF class Alias TAIR10 short description AT3G09370 231 / 5e-70 MYB ATMYB3R-3, ATMYB3R3 myb domain protein 3R3, myb domain protein 3r-3 (.1.2) AT5G02320 229 / 5e-69 MYB MYB3R-5, ATMYB3R5 ARABIDOPSIS THALIANA MYB DOMAIN PROTEIN 3R5, myb domain protein 3r-5 (.1.2) AT4G32730 233 / 6e-69 MYB ATMYB3R-1, PC-MYB1, ATMYB3R1 C-MYB-LIKE TRANSCRIPTION FACTOR 3R-1, ARABIDOOSIS THALIANA MYB DOMAIN PROTEIN 3R1, Homeodomain-like protein (.1.2) AT5G11510 230 / 2e-67 MYB ATMYB3R-4, AtMYB3R4 myb domain protein 3R4, myb domain protein 3r-4 (.1.2) AT4G00540 211 / 9e-64 MYB MYB3R-2, PC-MYB2, ATMYB3R2 C-MYB-LIKE TRANSCRIPTION FACTOR 3R-2, myb domain protein 3r2 (.1.2) AT4G18770 135 / 5e-35 MYB ATMYB98 myb domain protein 98 (.1) AT3G27785 131 / 1e-33 MYB PGA37, ATMYB118 PLANT GROWTH ACTIVATOR 37, myb domain protein 118 (.1) AT3G09230 129 / 5e-33 MYB ATMYB1 myb domain protein 1 (.1) AT5G58850 126 / 5e-32 MYB ATMYB119 myb domain protein 119 (.1) AT2G23290 124 / 7e-32 MYB ATMYB70 myb domain protein 70 (.1)
Paralogs Show only best Show top 10	Gene ID BLAST score/e-value At best hit BLAST score/e-value TAIR10 short description Potri.006G085600 [exp] 244 / 1e-74 AT5G02320 477 / 9e-164 ARABIDOPSIS THALIANA MYB DOMAIN PROTEIN 3R5, myb domain protein 3r-5 (.1.2) Potri.006G241700 [exp] 238 / 3e-69 AT5G11510 696 / 0.0 myb domain protein 3R4, myb domain protein 3r-4 (.1.2) Potri.014G079300 [exp] 227 / 2e-68 AT4G32730 266 / 5e-80 C-MYB-LIKE TRANSCRIPTION FACTOR 3R-1, ARABIDOOSIS THALIANA MYB DOMAIN PROTEIN 3R1, Homeodomain-like protein (.1.2) Potri.018G038000 [exp] 234 / 3e-68 AT4G32730 748 / 0.0 C-MYB-LIKE TRANSCRIPTION FACTOR 3R-1, ARABIDOOSIS THALIANA MYB DOMAIN PROTEIN 3R1, Homeodomain-like protein (.1.2) Potri.012G082000 [exp] 132 / 5e-34 AT4G18770 268 / 2e-85 myb domain protein 98 (.1) Potri.007G048900 [exp] 127 / 5e-33 AT4G37260 273 / 2e-90 myb domain protein 73 (.1) Potri.001G300200 [exp] 125 / 6e-33 AT4G37260 203 / 1e-64 myb domain protein 73 (.1) Potri.001G347200 [exp] 129 / 1e-32 AT3G27785 223 / 8e-68 PLANT GROWTH ACTIVATOR 37, myb domain protein 118 (.1) Potri.009G096000 [exp] 123 / 2e-32 AT4G37260 222 / 1e-71 myb domain protein 73 (.1)
Flax homologues Show only best Show top 10	Locus ID BLAST score/e-value At best hit BLAST score/e-value TAIR10 short description Lus10008010 [exp] 295 / 2e-95 AT5G02320 237 / 3e-72 ARABIDOPSIS THALIANA MYB DOMAIN PROTEIN 3R5, myb domain protein 3r-5 (.1.2) Lus10024394 [exp] 232 / 1e-70 AT3G09370 456 / 8e-157 myb domain protein 3R3, myb domain protein 3r-3 (.1.2) Lus10022136 [exp] 237 / 5e-69 AT4G32730 682 / 0.0 C-MYB-LIKE TRANSCRIPTION FACTOR 3R-1, ARABIDOOSIS THALIANA MYB DOMAIN PROTEIN 3R1, Homeodomain-like protein (.1.2) Lus10011687 [exp] 238 / 8e-69 AT4G32730 502 / 3e-158 C-MYB-LIKE TRANSCRIPTION FACTOR 3R-1, ARABIDOOSIS THALIANA MYB DOMAIN PROTEIN 3R1, Homeodomain-like protein (.1.2) Lus10025351 [exp] 223 / 3e-67 AT3G09370 456 / 8e-157 myb domain protein 3R3, myb domain protein 3r-3 (.1.2) Lus10038623 [exp] 223 / 1e-64 AT4G32730 376 / 3e-118 C-MYB-LIKE TRANSCRIPTION FACTOR 3R-1, ARABIDOOSIS THALIANA MYB DOMAIN PROTEIN 3R1, Homeodomain-like protein (.1.2) Lus10042111 [exp] 132 / 3e-34 AT4G18770 249 / 8e-79 myb domain protein 98 (.1) Lus10002384 [exp] 131 / 1e-33 AT4G18770 250 / 7e-79 myb domain protein 98 (.1) Lus10014103 [exp] 126 / 2e-33 AT4G37260 213 / 2e-68 myb domain protein 73 (.1) Lus10037898 [exp] 132 / 6e-33 AT4G32730 266 / 4e-77 C-MYB-LIKE TRANSCRIPTION FACTOR 3R-1, ARABIDOOSIS THALIANA MYB DOMAIN PROTEIN 3R1, Homeodomain-like protein (.1.2)
PFAM info	Clan ID Clan name Pfam ID Pfam name Pfam description CL0123 [poplar] [flax] HTH PF00249 [poplar] [flax] Myb_DNA-binding Myb-like DNA-binding domain
Representative CDS sequence Show only first row Show all	>Potri.003G123800.2 pacid=42784733 polypeptide=Potri.003G123800.2.p locus=Potri.003G123800 ID=Potri.003G123800.2.v4.1 annot-version=v4.1 ATGGAGATCATGAGAGTCAAGACAGAGGAGGAATTGTTCAATGTGGATTCGGAAAACGAAGTTATAGATGCTTCACCTTGTTCGGTTTATTTTGGGGCTT CTCCAAGGTGGACAACTGGTCCCACTAGATCATCAAGAAGGGGAGGATGGACAAAGGAAGAGGATTGTCTTCTGGAAGAATCAGTCCGGAAGTTCAATGG GAGGCATTGGAAGAAAATAGCTGAGTGTCTTCCTGGAAGGACAGTTTCTCAGTGCTTTTGCCGGTGGGACAGGGTTCTGAATCCTGCAATTGTCAAGGGA ACTTGGACAAAGGAGGAAGATGATTGCATCATGGAGTTAGTCGGAAAACATGGTTGTAGGAAATGGTCTGTTATCGCAAAGTCCTTACCAGGTCGAGTAG GAAAGCAATGCCGAGAAAGGTGGTTTAACCATTTAAATCCAACTATAAATAGAGCCCCATGGACAAAAGAGGAGGAGATGACTCTGACTTACTACCGTGA AATATATGGAAATAAGTGGGCCAAGATAGCGAGGTTTCTACCTGGAAGGAGTGATAATGCAATAAAAAATTACTGGAATTGTGTACTGAAGAAGAATTTG GATTCATATTCACTACATGGCTGTACAATGGATCTCTTCACAGTTAGTTCTCCCAGTTCCTACAACTGCGCCGCAGAACTAAACTGCTTGAAGTTAAAAG AAAGTCAAAGTGTTGAGAAGGCAGCCTTTGTATATGAAAATATGGAGTTGAGGTGTAGTGCTGAGATGAGTGCTTCTGGATCTGCAAAGGCCAATGGTAT TGGCAAGAAGAATGAAGTTCGCAAATTGCATATGCAAGCAGAGGAGACAAGCCAGAATTGCTTGCATCATGAGTCACAACAGCTAAGCACTTTGGTTTGT AATTTGGATGCGGGTGAAGTTCCTAGCATGGATACTTGTGTCATGCATCCAATCAGTCCATTTTGTTGTTCCACACCAACAAAGTACGCACGAAGTATCT CTGTCAATAGTACCAGTCCAGAATCAATATTGAGGAACTCAGCTAGGACCTTTAAAAATACCCCTTCTATTATAAGGAAGAGGGCTCTCAGAGGTGCTGC TATTGCTAAGATTTCTGATGTCACCTGCACACCTTCATCGAAGTTTTCATGTCCAGATGACTTCCAAATTGTCGACAGCACAAACAGTCCAAATGAGAAG CAAGGGTTTCTCCGTTACTTCCAACCTGAAACTTCATTTGCCATCAAGTCTCTGAAAAGGCACTTTGACTATGCTTTTGATATGGAAAAGGAGGCAGATT TGGGTAAATGCGGCAAATCAGTTTCTCTTAGTGAACCTCTGCATCAGAATTTCTTGGAATCGCGATAG
AA sequence Show only first row Show all	>Potri.003G123800.2 pacid=42784733 polypeptide=Potri.003G123800.2.p locus=Potri.003G123800 ID=Potri.003G123800.2.v4.1 annot-version=v4.1 MEIMRVKTEEELFNVDSENEVIDASPCSVYFGASPRWTTGPTRSSRRGGWTKEEDCLLEESVRKFNGRHWKKIAECLPGRTVSQCFCRWDRVLNPAIVKG TWTKEEDDCIMELVGKHGCRKWSVIAKSLPGRVGKQCRERWFNHLNPTINRAPWTKEEEMTLTYYREIYGNKWAKIARFLPGRSDNAIKNYWNCVLKKNL DSYSLHGCTMDLFTVSSPSSYNCAAELNCLKLKESQSVEKAAFVYENMELRCSAEMSASGSAKANGIGKKNEVRKLHMQAEETSQNCLHHESQQLSTLVC NLDAGEVPSMDTCVMHPISPFCCSTPTKYARSISVNSTSPESILRNSARTFKNTPSIIRKRALRGAAIAKISDVTCTPSSKFSCPDDFQIVDSTNSPNEK QGFLRYFQPETSFAIKSLKRHFDYAFDMEKEADLGKCGKSVSLSEPLHQNFLESR

---

DESeq2's median of ratios [POPLAR]

Mapped by: StringTie Salmon Order by: Tissue Experiment Show only core collection Show again Show schematic diagram

---

Coexpressed genes

Compare expression of checked genes Schematic diagram [FLAX] Schematic diagram [POPLAR]

*If you select 4 or less genes and then press "compare expression", expression will be shown as a graph. If you select more than 4 genes, expresion will be shown as a heat map.
*Color represents relative expression level among samples for each gene.

At best	At TF class	At alias	At description		Locus	MR	r	Symbol	NWA:WT	NWB:WT	NWA:OE-ARK2	NWB:OE-ARK2	NWA:miRNA-ARK2	NWB:miRNA-ARK2	NW 0hr	WT H20	WT-NW	TUA1dEY NW	TUA1dEY+TUB15 NW	TUA1dY+TUB9 NW	Pde NW	NWA:WT GA	NWBWT GA	TW:WT	TW:WT GA	NWA:OE-ARK2 GA	NWB:OE-ARK2 GA	TW:OE-ARK2	TW:OE-ARK2 GA	NWA:miRNA-ARK2 GA	NWB:miRNA-ARK2 GA	TW:miRNA-ARK2	TW:miRNA-ARK2 GA	TW 2hr	TW 8hr	TW 24hr	TW 48hr	TW 96hr	TW 336hr	WT ACC	35S::etr1-1 H20	35S::etr1-1 ACC	LMX5::etr1-1 H20	LMX5::etr1-1 ACC	WT-TW	TUA1dEY TW	TUA1dEY+TUB15 TW	TUA1dY+TUB9 TW	Pde TW	OW:WT	OW:WT GA	OW:OE-ARK2	OW:OE-ARK2 GA	OW:miRNA-ARK2	OW:miRNA-ARK2 GA	OW 2hr	OW 8hr	OW 24hr	OW 48hr	OW 96hr	OW 336hr	Root CTR	Root LongCold	Root LongDrougt	Root LongHeat	Root LongSalt	Root ShortCold	Root ShortDrougt	Root ShortHeat	Root ShortSalt	Ptr root	Leaf CTR	Leaf LongCold	Leaf LongDrougt	Leaf LongHeat	Leaf LongSalt	Leaf ShortCold	Leaf ShortDrougt	Leaf ShortHeat	Leaf ShortSalt	Ptr leaf	Stem CTR	Stem LongCold	Stem LongDrougt	Stem LongHeat	Stem LongSalt	Stem ShortCold	Stem ShortDrougt	Stem ShortHeat	Stem ShortSalt	Ptr shoot	Ptr xylem	Ptr phloem	Ptr fiber	Ptr vessel	Ptr fiber vessel ray
AT3G09370	MYB	ATMYB3R-3, ATMY...	myb domain protein 3R3, myb do...		Potri.003G123800 [exp]	0	1
AT1G12500			Nucleotide-sugar transporter f...		Potri.001G289900 [exp]	1.00	0.7174
AT3G53700		MEE40	maternal effect embryo arrest ...		Potri.005G003200 [exp]	19.51	0.6615
					Potri.004G099900 [exp]	21.49	0.6671
AT5G58510			unknown protein		Potri.001G280832 [exp]	22.44	0.6584
AT5G58930			Protein of unknown function (D...		Potri.009G042200 [exp]	31.87	0.6461
AT1G78160		APUM7	pumilio 7 (.1)		Potri.002G095400 [exp]	38.02	0.6504
					Potri.006G250500 [exp]	61.57	0.6241
AT5G13110		G6PD2	glucose-6-phosphate dehydrogen...		Potri.003G168000 [exp]	67.71	0.5463	Pt-G6PD.1
AT1G65550			Xanthine/uracil permease famil...		Potri.014G015100 [exp]	75.72	0.6052
AT3G20050		ATTCP-1	T-complex protein 1 alpha subu...		Potri.002G142700 [exp]	85.90	0.5770	BSTCP.2

Compare expression of checked genes

Potri.003G123800 coexpression network

*The number of genes in the network is adjusted within 50 genes.
*Gene name represents symbol(s) of closest Arabidopsis gene if symbol(s) for the gene itself doesn't exist.
*Circle diameter represents the number of connection with other genes within this network.
*Color for gene name represents subnetwork based on the result of network clustering.