Plant FIBer expression Database

External link	JGI Phytozome v13 [genome browser] Popgenie AspWood
Symbol
Arabidopsis homologues Show only best Show top 10	Locus ID BLAST score/e-value TF class Alias TAIR10 short description AT4G23640 947 / 0 ATKT3, KUP4, TRH1 TINY ROOT HAIR 1, Potassium transporter family protein (.1) AT3G02050 816 / 0 ATKT4, ATKUP3, KUP3 K+ uptake transporter 3, ARABIDOPSIS THALIANA POTASSIUM TRANSPORTER 4, K+ uptake transporter 3 (.1) AT2G40540 715 / 0 ATKUP2, ATKT2, TRK2, SHY3, KT2 potassium transporter 2 (.1.2) AT5G14880 708 / 0 Potassium transporter family protein (.1) AT1G70300 697 / 0 KUP6 K+ uptake permease 6, K+ uptake permease 6 (.1) AT2G30070 657 / 0 ATKUP1, ATKT1P, ATKT1 POTASSIUM UPTAKE TRANSPORTER 1, potassium transporter 1 (.1) AT1G60160 579 / 0 Potassium transporter family protein (.1) AT2G35060 574 / 0 KUP11 K+ uptake permease 11, K+ uptake permease 11 (.1), K+ uptake permease 11 (.2) AT1G31120 571 / 0 KUP10 K+ uptake permease 10, K+ uptake permease 10 (.1) AT4G19960 533 / 6e-179 KT9, HAK9, ATKUP9 K+ uptake permease 9, K+ uptake permease 9 (.1), K+ uptake permease 9 (.2)
Paralogs Show only best Show top 10	Gene ID BLAST score/e-value At best hit BLAST score/e-value TAIR10 short description Potri.014G144900 [exp] 887 / 0 AT3G02050 1175 / 0.0 K+ uptake transporter 3, ARABIDOPSIS THALIANA POTASSIUM TRANSPORTER 4, K+ uptake transporter 3 (.1) Potri.002G237500 [exp] 878 / 0 AT3G02050 1179 / 0.0 K+ uptake transporter 3, ARABIDOPSIS THALIANA POTASSIUM TRANSPORTER 4, K+ uptake transporter 3 (.1) Potri.008G147400 [exp] 739 / 0 AT1G70300 1221 / 0.0 K+ uptake permease 6, K+ uptake permease 6 (.1) Potri.010G094300 [exp] 733 / 0 AT1G70300 1228 / 0.0 K+ uptake permease 6, K+ uptake permease 6 (.1) Potri.019G056500 [exp] 729 / 0 AT2G40540 1272 / 0.0 potassium transporter 2 (.1.2) Potri.009G073500 [exp] 717 / 0 AT2G30070 1092 / 0.0 POTASSIUM UPTAKE TRANSPORTER 1, potassium transporter 1 (.1) Potri.013G083400 [exp] 715 / 0 AT2G40540 1225 / 0.0 potassium transporter 2 (.1.2) Potri.003G148200 [exp] 688 / 0 AT2G30070 831 / 0.0 POTASSIUM UPTAKE TRANSPORTER 1, potassium transporter 1 (.1) Potri.005G095900 [exp] 624 / 0 AT2G30070 769 / 0.0 POTASSIUM UPTAKE TRANSPORTER 1, potassium transporter 1 (.1)
Flax homologues Show only best Show top 10	Locus ID BLAST score/e-value At best hit BLAST score/e-value TAIR10 short description Lus10030857 [exp] 740 / 0 AT1G70300 1249 / 0.0 K+ uptake permease 6, K+ uptake permease 6 (.1) Lus10030632 [exp] 729 / 0 AT1G70300 1238 / 0.0 K+ uptake permease 6, K+ uptake permease 6 (.1) Lus10030539 [exp] 707 / 0 AT2G40540 1245 / 0.0 potassium transporter 2 (.1.2) Lus10034215 [exp] 696 / 0 AT2G40540 1239 / 0.0 potassium transporter 2 (.1.2) Lus10012992 [exp] 686 / 0 AT1G70300 1188 / 0.0 K+ uptake permease 6, K+ uptake permease 6 (.1) Lus10018324 [exp] 576 / 0 AT2G35060 1212 / 0.0 K+ uptake permease 11, K+ uptake permease 11 (.1), K+ uptake permease 11 (.2) Lus10038361 [exp] 569 / 0 AT2G35060 1164 / 0.0 K+ uptake permease 11, K+ uptake permease 11 (.1), K+ uptake permease 11 (.2) Lus10024709 [exp] 535 / 0 AT3G02050 636 / 0.0 K+ uptake transporter 3, ARABIDOPSIS THALIANA POTASSIUM TRANSPORTER 4, K+ uptake transporter 3 (.1) Lus10036221 [exp] 536 / 2e-180 AT2G35060 1173 / 0.0 K+ uptake permease 11, K+ uptake permease 11 (.1), K+ uptake permease 11 (.2) Lus10012993 [exp] 537 / 6e-180 AT1G60160 1237 / 0.0 Potassium transporter family protein (.1)
PFAM info	Clan ID Clan name Pfam ID Pfam name Pfam description CL0062 [poplar] [flax] APC PF02705 [poplar] [flax] K_trans K+ potassium transporter
Representative CDS sequence Show only first row Show all	>Potri.003G133900.1 pacid=42785810 polypeptide=Potri.003G133900.1.p locus=Potri.003G133900 ID=Potri.003G133900.1.v4.1 annot-version=v4.1 ATGGCGGAGTGTAAGAATCAGCGAAAACATGTTTTACTATTAGCATATCAGAGTTTTGGGATTGTGTTTAGTGACTTAAGCATTCCACCTTTATATGTTT ATAAATGTACATTTTCCGGGAGATTACGTCATTATCAGAATGAAGACACCGTTTTTGGAGCCTTTTCATTGGTTTTTTGGACTCTTACGCTTTTTTCCTT GTTCAAGTATGTTGGATTCATGTTGTGTGCAAATGATAATGGCGAAGGAGGGATTTTTGCGTTGTACTCGGTTATTTGTAGGCACGCAAAGTTTTGTTTA CTTCCTAATCAACAAGCGGCGGACGAGGAGATTTCTACATATCATAGTGTGGGTTATTCAAATAGGAATGTGGTTTCATCTCGGTTCAAGAAGTTTGTTG AGGGACATAAGAAAATGAAAACAGCTCTGCTTGTTTTAGTTTTGTTTGGTGCTGCCGTGTTTATTACCATCGCCATCTTCACGCCTGCAATTTCCATTCT TTCATCCGTTGAAGGGCTGCAGGTTCGAGCCAAGAATTTGCATCATGGTATGTTGGTCATCATTGCCTTGTTTTTATTGATCGGCCTTTTTGTATTGCAA CACTATGGCATGCATAGGGTGGCCTTCATATTTGCTCCCATAGTGATTCTATGGTTACTGTCCATTGCCTTTGTTGGTATCTACAATATCATTAAATGGA ATCCAAGAGTATACCAGGCTCTTTCTCCATATTATATCTACAAGTTCTTTGGGGAAACAGGAAAGGATGGTTGGATTTCTCTTGGCGGAATACTTTTATG TATTACTGGAACTGAAGTTATATTTGCAGGGCTTGGCCATTTCACAGCTTCATCAATAAGGGTTGCATTTTCATTTGTTGTGTACCCATGTTTGGTGCTT CAATACATGGGGCAGGCTGCATTTCTTTCACAAAACTTTTCTTCTGTATCCACGAGCTTCCATTCTTCCATTCCTGACTCGTTGTTCTGGCCTGTCACGG TGATGGCAACTTTGGCTGCGATTGTTGCCAGTCAAGCTGTAGTCTCTGCCACATTTTCAATTGCCAAACAATGCCACGCATTAGGATGTTTCCCTCGCAT CAAGATTGTACACAAATCAAAATGGGTACATCGCCAGACATACGTCCCTGAGATAAATTGGGCACTTATGATTCTCTGTCTAGCAGTTACAGTTGGTTCT CAAGACACCATTCATTTAGGAAATGCTTATGGGATTGCATGCATAACTGGGATATTTGTGACTACATGTTTGACATCAATGATCATTGACTTCGTATGGC ATAAGAACCTCTTGGTTGCTCTTTTGTACTTCTCATTCTTCGGAATAATAGAGATAATTTTCGTCTCATCTTCATGCATGAGAATTCCCAAAGGTGGATG GGTTCCTCTTGTGCTCTCTGCAGTCTTTATGTCTGTCATGTATGTGTGGCATTATGGTAGCAGGAAGAAGTATCTATATGATCTGCATAACAAAGCTTCC ATGAAATGGATCCTCACTTTAGGTTCTGATCTCGGGATTGTAAGGATTCCTGGGATTGGTCTTGTCTACACTGAGTTAGCAAGTGGAGTCCCAGCCATGT TTTCCCAGTTCATAACTGACTTGCCTACATTTTACCAAGTGGTTGTATTTATCTGTGTTAAGACTGTTCCCATTCCTTATGTTTCCCAGAAAGAACGGTA TCTTATTGGCCGGATTGGCCCCAAACCTTACAAGATGTACCGCTGCATTGTTCGATATGGATACAAAGATGTCCATGAAAATGATGACTATGATTTTGAA AATGCTATTGTGATGAGTGTAGCAGAGTTCATCCAATTGGAAGCAGAGGGTGGTGGAACTCTTGATGGTTCTGTGGATGGTCGGTTGGCAGTTGTGAGGT CATCTGAAAATTTTGGAAAAAGATTCATGATGTCAGAATCTGATGGCAATAAGGAGAGCAGCAGTTGGAGCTACCCAGCATCTGGAAGTAGCTCCAGGTC AGCTGCATTGCAGAAATTGAAGTCCATGTATGAGTTGGAGTCACCAGAGTTCTGCAATAGGCGTCGGATCCAGTTAAAGTTATTGGATACAACATACAAG GATTCCCGTGTCAAGGAAGAAATCTTAGAGCTCTTGGAAGCAAAAGATGCCGGGGTAGCATATGTAATAGGTCACTCTCATATTAAGGCGAAATGGAATG CAACATTCTGGAAGAGGCTTCTGATCAATGTCTTTCTCTCTTTTTTACGCAAAAACTGTCGGTCCCCTAGTGTTGGTTTGAATATTCCTCATATATCTTT GATTGAAGTGGGTATGAACTACTATCTGTAA
AA sequence Show only first row Show all	>Potri.003G133900.1 pacid=42785810 polypeptide=Potri.003G133900.1.p locus=Potri.003G133900 ID=Potri.003G133900.1.v4.1 annot-version=v4.1 MAECKNQRKHVLLLAYQSFGIVFSDLSIPPLYVYKCTFSGRLRHYQNEDTVFGAFSLVFWTLTLFSLFKYVGFMLCANDNGEGGIFALYSVICRHAKFCL LPNQQAADEEISTYHSVGYSNRNVVSSRFKKFVEGHKKMKTALLVLVLFGAAVFITIAIFTPAISILSSVEGLQVRAKNLHHGMLVIIALFLLIGLFVLQ HYGMHRVAFIFAPIVILWLLSIAFVGIYNIIKWNPRVYQALSPYYIYKFFGETGKDGWISLGGILLCITGTEVIFAGLGHFTASSIRVAFSFVVYPCLVL QYMGQAAFLSQNFSSVSTSFHSSIPDSLFWPVTVMATLAAIVASQAVVSATFSIAKQCHALGCFPRIKIVHKSKWVHRQTYVPEINWALMILCLAVTVGS QDTIHLGNAYGIACITGIFVTTCLTSMIIDFVWHKNLLVALLYFSFFGIIEIIFVSSSCMRIPKGGWVPLVLSAVFMSVMYVWHYGSRKKYLYDLHNKAS MKWILTLGSDLGIVRIPGIGLVYTELASGVPAMFSQFITDLPTFYQVVVFICVKTVPIPYVSQKERYLIGRIGPKPYKMYRCIVRYGYKDVHENDDYDFE NAIVMSVAEFIQLEAEGGGTLDGSVDGRLAVVRSSENFGKRFMMSESDGNKESSSWSYPASGSSSRSAALQKLKSMYELESPEFCNRRRIQLKLLDTTYK DSRVKEEILELLEAKDAGVAYVIGHSHIKAKWNATFWKRLLINVFLSFLRKNCRSPSVGLNIPHISLIEVGMNYYL

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DESeq2's median of ratios [POPLAR]

Mapped by: StringTie Salmon Order by: Tissue Experiment Show only core collection Show again Show schematic diagram

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Coexpressed genes

Compare expression of checked genes Schematic diagram [FLAX] Schematic diagram [POPLAR]

*If you select 4 or less genes and then press "compare expression", expression will be shown as a graph. If you select more than 4 genes, expresion will be shown as a heat map.
*Color represents relative expression level among samples for each gene.

At best	At TF class	At alias	At description		Locus	MR	r	Symbol	NWA:WT	NWB:WT	NWA:OE-ARK2	NWB:OE-ARK2	NWA:miRNA-ARK2	NWB:miRNA-ARK2	NW 0hr	WT H20	WT-NW	TUA1dEY NW	TUA1dEY+TUB15 NW	TUA1dY+TUB9 NW	Pde NW	NWA:WT GA	NWBWT GA	TW:WT	TW:WT GA	NWA:OE-ARK2 GA	NWB:OE-ARK2 GA	TW:OE-ARK2	TW:OE-ARK2 GA	NWA:miRNA-ARK2 GA	NWB:miRNA-ARK2 GA	TW:miRNA-ARK2	TW:miRNA-ARK2 GA	TW 2hr	TW 8hr	TW 24hr	TW 48hr	TW 96hr	TW 336hr	WT ACC	35S::etr1-1 H20	35S::etr1-1 ACC	LMX5::etr1-1 H20	LMX5::etr1-1 ACC	WT-TW	TUA1dEY TW	TUA1dEY+TUB15 TW	TUA1dY+TUB9 TW	Pde TW	OW:WT	OW:WT GA	OW:OE-ARK2	OW:OE-ARK2 GA	OW:miRNA-ARK2	OW:miRNA-ARK2 GA	OW 2hr	OW 8hr	OW 24hr	OW 48hr	OW 96hr	OW 336hr	Root CTR	Root LongCold	Root LongDrougt	Root LongHeat	Root LongSalt	Root ShortCold	Root ShortDrougt	Root ShortHeat	Root ShortSalt	Ptr root	Leaf CTR	Leaf LongCold	Leaf LongDrougt	Leaf LongHeat	Leaf LongSalt	Leaf ShortCold	Leaf ShortDrougt	Leaf ShortHeat	Leaf ShortSalt	Ptr leaf	Stem CTR	Stem LongCold	Stem LongDrougt	Stem LongHeat	Stem LongSalt	Stem ShortCold	Stem ShortDrougt	Stem ShortHeat	Stem ShortSalt	Ptr shoot	Ptr xylem	Ptr phloem	Ptr fiber	Ptr vessel	Ptr fiber vessel ray
AT4G23640		ATKT3, KUP4, TR...	TINY ROOT HAIR 1, Potassium tr...		Potri.003G133900 [exp]	0	1
AT2G01930	BBR_BPC	BPC1, BBR/BPC1,...	basic pentacysteine1 (.1.2)		Potri.015G033000 [exp]	3.00	0.7448
AT3G13340			Transducin/WD40 repeat-like su...		Potri.006G000500 [exp]	11.74	0.6340
AT5G16850		ATTERT	telomerase reverse transcripta...		Potri.003G022600 [exp]	13.85	0.7293
AT3G52570			alpha/beta-Hydrolases superfam...		Potri.016G076601 [exp]	21.90	0.6531
AT5G65950			unknown protein		Potri.001G457201 [exp]	40.64	0.6630
AT5G38380			unknown protein		Potri.017G115200 [exp]	40.79	0.6151
AT3G59090			unknown protein		Potri.005G203600 [exp]	48.57	0.6843
AT5G03540		ATEXO70A1	exocyst subunit exo70 family p...		Potri.010G241800 [exp]	49.56	0.6375
AT1G76630			Tetratricopeptide repeat (TPR)...		Potri.002G001700 [exp]	58.44	0.6382
AT3G10380		SEC8, ATSEC8	subunit of exocyst complex 8 (...		Potri.008G035300 [exp]	64.21	0.6595

Compare expression of checked genes

Potri.003G133900 coexpression network

*The number of genes in the network is adjusted within 50 genes.
*Gene name represents symbol(s) of closest Arabidopsis gene if symbol(s) for the gene itself doesn't exist.
*Circle diameter represents the number of connection with other genes within this network.
*Color for gene name represents subnetwork based on the result of network clustering.