Plant FIBer expression Database

External link	JGI Phytozome v13 [genome browser] Popgenie AspWood
Symbol
Arabidopsis homologues Show only best Show top 10	Locus ID BLAST score/e-value TF class Alias TAIR10 short description AT5G49330 206 / 2e-64 MYB PFG3, ATMYB111 PRODUCTION OF FLAVONOL GLYCOSIDES 3, ARABIDOPSIS MYB DOMAIN PROTEIN 111, myb domain protein 111 (.1) AT2G47460 202 / 9e-63 MYB PFG1, ATMYB12 PRODUCTION OF FLAVONOL GLYCOSIDES 1, myb domain protein 12 (.1) AT3G23250 199 / 9e-63 MYB ATMYB15, ATY19 myb domain protein 15 (.1.2) AT3G13540 197 / 2e-62 MYB ATMYB5, ATM2 myb domain protein 5 (.1) AT1G22640 196 / 9e-62 MYB AtMYB3 ARABIDOPSIS THALIANA MYB DOMAIN PROTEIN 3, myb domain protein 3 (.1) AT4G38620 196 / 1e-61 MYB AtMYB4 myb domain protein 4 (.1) AT2G16720 194 / 4e-61 MYB AtY49, AtMYB7 ARABIDOPSIS THALIANA MYB DOMAIN PROTEIN 7, myb domain protein 7 (.1) AT4G09460 193 / 4e-61 MYB ATMYB6, ATMYB8 myb domain protein 6 (.1) AT2G31180 192 / 1e-60 MYB ATMYB14, Myb14at ARABIDOPSIS THALIANA MYB DOMAIN PROTEIN 14, myb domain protein 14 (.1) AT1G06180 192 / 1e-60 MYB ATMYB13, AtMYBlfgn myb domain protein 13 (.1)
Paralogs Show only best Show top 10	Gene ID BLAST score/e-value At best hit BLAST score/e-value TAIR10 short description Potri.001G086700 [exp] 430 / 5e-154 AT5G49330 203 / 6e-64 PRODUCTION OF FLAVONOL GLYCOSIDES 3, ARABIDOPSIS MYB DOMAIN PROTEIN 111, myb domain protein 111 (.1) Potri.003G144300 [exp] 324 / 5e-112 AT1G22640 197 / 1e-62 ARABIDOPSIS THALIANA MYB DOMAIN PROTEIN 3, myb domain protein 3 (.1) Potri.014G100800 [exp] 275 / 7e-93 AT2G16720 207 / 3e-66 ARABIDOPSIS THALIANA MYB DOMAIN PROTEIN 7, myb domain protein 7 (.1) Potri.002G173900 [exp] 263 / 5e-88 AT3G13540 207 / 4e-66 myb domain protein 5 (.1) Potri.003G219900 [exp] 207 / 2e-65 AT3G13540 243 / 1e-79 myb domain protein 5 (.1) Potri.001G005100 [exp] 205 / 1e-64 AT3G13540 247 / 1e-81 myb domain protein 5 (.1) Potri.013G056500 [exp] 203 / 4e-64 AT3G13540 236 / 4e-77 myb domain protein 5 (.1) Potri.013G056400 [exp] 203 / 4e-64 AT3G13540 226 / 2e-73 myb domain protein 5 (.1) Potri.006G221800 [exp] 201 / 1e-63 AT4G38620 197 / 5e-62 myb domain protein 4 (.1)
Flax homologues Show only best Show top 10	Locus ID BLAST score/e-value At best hit BLAST score/e-value TAIR10 short description Lus10033438 [exp] 211 / 4e-67 AT1G22640 194 / 2e-61 ARABIDOPSIS THALIANA MYB DOMAIN PROTEIN 3, myb domain protein 3 (.1) Lus10000470 [exp] 210 / 1e-66 AT2G16720 196 / 2e-61 ARABIDOPSIS THALIANA MYB DOMAIN PROTEIN 7, myb domain protein 7 (.1) Lus10033889 [exp] 203 / 3e-64 AT3G23250 239 / 1e-78 myb domain protein 15 (.1.2) Lus10009448 [exp] 196 / 2e-61 AT4G09460 290 / 2e-99 myb domain protein 6 (.1) Lus10003557 [exp] 196 / 3e-61 AT3G23250 239 / 4e-78 myb domain protein 15 (.1.2) Lus10000411 [exp] 195 / 3e-61 AT4G09460 300 / 5e-103 myb domain protein 6 (.1) Lus10001548 [exp] 194 / 6e-61 AT4G09460 291 / 2e-99 myb domain protein 6 (.1) Lus10016948 [exp] 194 / 1e-60 AT4G09460 301 / 1e-103 myb domain protein 6 (.1) Lus10028435 [exp] 191 / 1e-60 AT2G16720 246 / 2e-82 ARABIDOPSIS THALIANA MYB DOMAIN PROTEIN 7, myb domain protein 7 (.1) Lus10016855 [exp] 194 / 3e-60 AT5G49330 242 / 3e-78 PRODUCTION OF FLAVONOL GLYCOSIDES 3, ARABIDOPSIS MYB DOMAIN PROTEIN 111, myb domain protein 111 (.1)
PFAM info	Clan ID Clan name Pfam ID Pfam name Pfam description CL0123 [poplar] [flax] HTH PF00249 [poplar] [flax] Myb_DNA-binding Myb-like DNA-binding domain
Representative CDS sequence Show only first row Show all	>Potri.003G144200.1 pacid=42785442 polypeptide=Potri.003G144200.1.p locus=Potri.003G144200 ID=Potri.003G144200.1.v4.1 annot-version=v4.1 ATGGGAAGAGCTCCATGTTGCTCTAAAGTTGGTTTGCAAAGAGGTCCATGGACTACTAGAGAAGACACGCTGCTCATTAACTATATCCAGGCGCATGGTG AAGGTCATTGGAGATCTTTGCCTAAGAAAGCTGGGCTACTTAGATGTGGCAAGAGTTGCAGGCTAAGATGGATGAACTACCTTCGGCCCGATATCAAGAG AGGGAACATCACTCCTGATGAGGATGACCTGATCATTCGGCTGCATTCTCTTCTTGGCAACCGTTGGTCTCTCATTGCAGGAAGGTTGCCAGGCCGGACT GACAATGAAATCAAGAACTATTGGAACTCTCACCTCAGCAAAAGAGTCAAGAACAACACAGCAGGAAACAAGTCCAAATGCATGGGGCAACCAGCTGGAA AGAGAAGTGGCGCCAACTCCAACAAAAAAAGGAAAAGGAATCAAAGGGAGCTGGACAGTGAAGCCATCTGTAGTGAAAATGGAGAGACTGCTATCAAGAT AAAGATTCACCTCCCAAAGGCAACAAGGGTTTCTCCATCCTCTGTTGCAAAGAATATCAACGTTAATATTCAAAGCATGATTGGGTCATCATCTAGACAT GCAAAGATTGGTGATAATGCTAATTGGGGCATCTCTGGTCTTGAAGTTGTTAGCAATGATGGAGAGGCATGGGCTTTCAATAGTGAAGAATTTGATGGTC TTGTTTATGACCATGATTCCTCGTGTCCAAATTCTTTACCCAATGATATTATGCTAGATGATATCTTTGAGGAATACCAGGAACTCCTCAAGCCAGATGA TCATGGTCAATTGGATTCCTTGGTGGATTCTCTTATTGCTTGA
AA sequence Show only first row Show all	>Potri.003G144200.1 pacid=42785442 polypeptide=Potri.003G144200.1.p locus=Potri.003G144200 ID=Potri.003G144200.1.v4.1 annot-version=v4.1 MGRAPCCSKVGLQRGPWTTREDTLLINYIQAHGEGHWRSLPKKAGLLRCGKSCRLRWMNYLRPDIKRGNITPDEDDLIIRLHSLLGNRWSLIAGRLPGRT DNEIKNYWNSHLSKRVKNNTAGNKSKCMGQPAGKRSGANSNKKRKRNQRELDSEAICSENGETAIKIKIHLPKATRVSPSSVAKNINVNIQSMIGSSSRH AKIGDNANWGISGLEVVSNDGEAWAFNSEEFDGLVYDHDSSCPNSLPNDIMLDDIFEEYQELLKPDDHGQLDSLVDSLIA

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DESeq2's median of ratios [POPLAR]

Mapped by: StringTie Salmon Order by: Tissue Experiment Show only core collection Show again Show schematic diagram

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Coexpressed genes

Compare expression of checked genes Schematic diagram [FLAX] Schematic diagram [POPLAR]

*If you select 4 or less genes and then press "compare expression", expression will be shown as a graph. If you select more than 4 genes, expresion will be shown as a heat map.
*Color represents relative expression level among samples for each gene.

At best	At TF class	At alias	At description		Locus	MR	r	Symbol	NWA:WT	NWB:WT	NWA:OE-ARK2	NWB:OE-ARK2	NWA:miRNA-ARK2	NWB:miRNA-ARK2	NW 0hr	WT H20	WT-NW	TUA1dEY NW	TUA1dEY+TUB15 NW	TUA1dY+TUB9 NW	Pde NW	NWA:WT GA	NWBWT GA	TW:WT	TW:WT GA	NWA:OE-ARK2 GA	NWB:OE-ARK2 GA	TW:OE-ARK2	TW:OE-ARK2 GA	NWA:miRNA-ARK2 GA	NWB:miRNA-ARK2 GA	TW:miRNA-ARK2	TW:miRNA-ARK2 GA	TW 2hr	TW 8hr	TW 24hr	TW 48hr	TW 96hr	TW 336hr	WT ACC	35S::etr1-1 H20	35S::etr1-1 ACC	LMX5::etr1-1 H20	LMX5::etr1-1 ACC	WT-TW	TUA1dEY TW	TUA1dEY+TUB15 TW	TUA1dY+TUB9 TW	Pde TW	OW:WT	OW:WT GA	OW:OE-ARK2	OW:OE-ARK2 GA	OW:miRNA-ARK2	OW:miRNA-ARK2 GA	OW 2hr	OW 8hr	OW 24hr	OW 48hr	OW 96hr	OW 336hr	Root CTR	Root LongCold	Root LongDrougt	Root LongHeat	Root LongSalt	Root ShortCold	Root ShortDrougt	Root ShortHeat	Root ShortSalt	Ptr root	Leaf CTR	Leaf LongCold	Leaf LongDrougt	Leaf LongHeat	Leaf LongSalt	Leaf ShortCold	Leaf ShortDrougt	Leaf ShortHeat	Leaf ShortSalt	Ptr leaf	Stem CTR	Stem LongCold	Stem LongDrougt	Stem LongHeat	Stem LongSalt	Stem ShortCold	Stem ShortDrougt	Stem ShortHeat	Stem ShortSalt	Ptr shoot	Ptr xylem	Ptr phloem	Ptr fiber	Ptr vessel	Ptr fiber vessel ray
AT5G49330	MYB	PFG3, ATMYB111	PRODUCTION OF FLAVONOL GLYCOSI...		Potri.003G144200 [exp]	0	1
AT2G01340		At17.1	unknown protein		Potri.010G113800 [exp]	3.60	0.9116
AT2G23060			Acyl-CoA N-acyltransferases (N...		Potri.003G182500 [exp]	12.96	0.9008
AT1G16260			Wall-associated kinase family ...		Potri.003G186100 [exp]	13.85	0.9098
AT1G05260		RCI3A, RCI3	RARE COLD INDUCIBLE GENE 3, Pe...		Potri.015G003600 [exp]	18.84	0.8949
AT3G48310		CYP71A22	"cytochrome P450, family 71, s...		Potri.012G089600 [exp]	20.59	0.8912
AT3G24240			Leucine-rich repeat receptor-l...		Potri.003G175700 [exp]	21.97	0.8801
AT4G03230			S-locus lectin protein kinase ...		Potri.019G119600 [exp]	22.36	0.8892
AT3G26040			HXXXD-type acyl-transferase fa...		Potri.010G056400 [exp]	28.87	0.8938
AT3G26040			HXXXD-type acyl-transferase fa...		Potri.010G056450 [exp]	29.58	0.8931
AT3G20898			unknown protein		Potri.006G053600 [exp]	29.59	0.8871

Compare expression of checked genes

Potri.003G144200 coexpression network

*The number of genes in the network is adjusted within 50 genes.
*Gene name represents symbol(s) of closest Arabidopsis gene if symbol(s) for the gene itself doesn't exist.
*Circle diameter represents the number of connection with other genes within this network.
*Color for gene name represents subnetwork based on the result of network clustering.