Plant FIBer expression Database

External link	JGI Phytozome v13 [genome browser] Popgenie AspWood
Symbol	MYB153
Arabidopsis homologues Show only best Show top 10	Locus ID BLAST score/e-value TF class Alias TAIR10 short description AT3G23250 199 / 6e-63 MYB ATMYB15, ATY19 myb domain protein 15 (.1.2) AT1G22640 198 / 6e-63 MYB AtMYB3 ARABIDOPSIS THALIANA MYB DOMAIN PROTEIN 3, myb domain protein 3 (.1) AT5G49330 199 / 2e-62 MYB PFG3, ATMYB111 PRODUCTION OF FLAVONOL GLYCOSIDES 3, ARABIDOPSIS MYB DOMAIN PROTEIN 111, myb domain protein 111 (.1) AT2G47460 200 / 3e-62 MYB PFG1, ATMYB12 PRODUCTION OF FLAVONOL GLYCOSIDES 1, myb domain protein 12 (.1) AT3G13540 196 / 6e-62 MYB ATMYB5, ATM2 myb domain protein 5 (.1) AT4G38620 195 / 3e-61 MYB AtMYB4 myb domain protein 4 (.1) AT2G16720 193 / 1e-60 MYB AtY49, AtMYB7 ARABIDOPSIS THALIANA MYB DOMAIN PROTEIN 7, myb domain protein 7 (.1) AT4G09460 192 / 1e-60 MYB ATMYB6, ATMYB8 myb domain protein 6 (.1) AT2G31180 191 / 3e-60 MYB ATMYB14, Myb14at ARABIDOPSIS THALIANA MYB DOMAIN PROTEIN 14, myb domain protein 14 (.1) AT1G06180 191 / 4e-60 MYB ATMYB13, AtMYBlfgn myb domain protein 13 (.1)
Paralogs Show only best Show top 10	Gene ID BLAST score/e-value At best hit BLAST score/e-value TAIR10 short description Potri.001G086700 [exp] 329 / 4e-114 AT5G49330 203 / 6e-64 PRODUCTION OF FLAVONOL GLYCOSIDES 3, ARABIDOPSIS MYB DOMAIN PROTEIN 111, myb domain protein 111 (.1) Potri.003G144200 [exp] 324 / 5e-112 AT5G49330 205 / 2e-64 PRODUCTION OF FLAVONOL GLYCOSIDES 3, ARABIDOPSIS MYB DOMAIN PROTEIN 111, myb domain protein 111 (.1) Potri.014G100800 [exp] 268 / 5e-90 AT2G16720 207 / 3e-66 ARABIDOPSIS THALIANA MYB DOMAIN PROTEIN 7, myb domain protein 7 (.1) Potri.002G173900 [exp] 263 / 8e-88 AT3G13540 207 / 4e-66 myb domain protein 5 (.1) Potri.003G219900 [exp] 210 / 2e-66 AT3G13540 243 / 1e-79 myb domain protein 5 (.1) Potri.001G005100 [exp] 203 / 5e-64 AT3G13540 247 / 1e-81 myb domain protein 5 (.1) Potri.013G056500 [exp] 202 / 1e-63 AT3G13540 236 / 4e-77 myb domain protein 5 (.1) Potri.019G018200 [exp] 199 / 1e-63 AT2G31180 223 / 1e-73 ARABIDOPSIS THALIANA MYB DOMAIN PROTEIN 14, myb domain protein 14 (.1) Potri.013G056400 [exp] 200 / 5e-63 AT3G13540 226 / 2e-73 myb domain protein 5 (.1)
Flax homologues Show only best Show top 10	Locus ID BLAST score/e-value At best hit BLAST score/e-value TAIR10 short description Lus10033438 [exp] 207 / 6e-66 AT1G22640 194 / 2e-61 ARABIDOPSIS THALIANA MYB DOMAIN PROTEIN 3, myb domain protein 3 (.1) Lus10000470 [exp] 205 / 4e-65 AT2G16720 196 / 2e-61 ARABIDOPSIS THALIANA MYB DOMAIN PROTEIN 7, myb domain protein 7 (.1) Lus10033889 [exp] 197 / 5e-62 AT3G23250 239 / 1e-78 myb domain protein 15 (.1.2) Lus10009448 [exp] 194 / 6e-61 AT4G09460 290 / 2e-99 myb domain protein 6 (.1) Lus10003557 [exp] 194 / 1e-60 AT3G23250 239 / 4e-78 myb domain protein 15 (.1.2) Lus10000411 [exp] 194 / 1e-60 AT4G09460 300 / 5e-103 myb domain protein 6 (.1) Lus10016948 [exp] 194 / 1e-60 AT4G09460 301 / 1e-103 myb domain protein 6 (.1) Lus10001548 [exp] 193 / 2e-60 AT4G09460 291 / 2e-99 myb domain protein 6 (.1) Lus10014784 [exp] 191 / 1e-59 AT3G61250 342 / 1e-118 LATE MERISTEM IDENTITY2, myb domain protein 17 (.1) Lus10028435 [exp] 189 / 1e-59 AT2G16720 246 / 2e-82 ARABIDOPSIS THALIANA MYB DOMAIN PROTEIN 7, myb domain protein 7 (.1)
PFAM info	Clan ID Clan name Pfam ID Pfam name Pfam description CL0123 [poplar] [flax] HTH PF00249 [poplar] [flax] Myb_DNA-binding Myb-like DNA-binding domain
Representative CDS sequence Show only first row Show all	>Potri.003G144300.1 pacid=42786406 polypeptide=Potri.003G144300.1.p locus=Potri.003G144300 ID=Potri.003G144300.1.v4.1 annot-version=v4.1 ATGGGAAGAGCACCATGTTGCTCTAAGGTTGGTTTGCATAGAGGTCCATGGACTACTAGAGAAGACGCACTCCTCGTTAACTATATTCAGAAACACGGTG AAGGCCACTGGAGATCCTTGCCAAACAAAGCTGGGCTGCTTAGATGTGGCAAGAGTTGTAGGCTGAGATGGCTTAACTATCTTCGGCCAGATATTAAGAG AGGGAACATTACCCCTGAAGAGGATGACCTGATCATCCGACTACATTCCCTTCTAGGCAATCGTTGGTCTCTCATTGCTGGAAGGTTGCCAGGCCGAACT GACAATGAAATCAAGAACTACTGGAACTCCCATCTCAGCAAGAGACTCCAGGTTAGAAGCAATAAGAACGGGTCAAAATGCATGAAGGAATCAGCTGACC GAAAGAGAAATGTCTCCAAGCTCAACAACAAAAAGAAGCAGAGGAAGGACGATGAGGACCCTGCTACAAGGACCAAGATTCATGCCCCGAAGGCAATAAG GGTTTCTCCATCCTCAGTGAATATCAGGACTAATAATAGCATGGCTGGGTCATCTAGTCATGCAGGAGGAGTTGGTGATCACGATGACAATTGGTTCATC TCTGATCTTGAAGTTGATAAGAATATCAATGGGGATCTGGCTTGGGCTTCCAATCGCTGTATTGACGATCTTGTCCATGATGATCTCTCAGGCCAAAATC ACTCACCGTCCAATATTGATAACATCCTAGAAGAAATGTTTGGGGAATATCAGCAGCTCTTGAATTCAGAGAATCATGCTCAATTATTGGACTCCTTTGT GGACTCGCTGTTGGCTTGA
AA sequence Show only first row Show all	>Potri.003G144300.1 pacid=42786406 polypeptide=Potri.003G144300.1.p locus=Potri.003G144300 ID=Potri.003G144300.1.v4.1 annot-version=v4.1 MGRAPCCSKVGLHRGPWTTREDALLVNYIQKHGEGHWRSLPNKAGLLRCGKSCRLRWLNYLRPDIKRGNITPEEDDLIIRLHSLLGNRWSLIAGRLPGRT DNEIKNYWNSHLSKRLQVRSNKNGSKCMKESADRKRNVSKLNNKKKQRKDDEDPATRTKIHAPKAIRVSPSSVNIRTNNSMAGSSSHAGGVGDHDDNWFI SDLEVDKNINGDLAWASNRCIDDLVHDDLSGQNHSPSNIDNILEEMFGEYQQLLNSENHAQLLDSFVDSLLA

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DESeq2's median of ratios [POPLAR]

Mapped by: StringTie Salmon Order by: Tissue Experiment Show only core collection Show again Show schematic diagram

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Coexpressed genes

Compare expression of checked genes Schematic diagram [FLAX] Schematic diagram [POPLAR]

*If you select 4 or less genes and then press "compare expression", expression will be shown as a graph. If you select more than 4 genes, expresion will be shown as a heat map.
*Color represents relative expression level among samples for each gene.

At best	At TF class	At alias	At description		Locus	MR	r	Symbol	NWA:WT	NWB:WT	NWA:OE-ARK2	NWB:OE-ARK2	NWA:miRNA-ARK2	NWB:miRNA-ARK2	NW 0hr	WT H20	WT-NW	TUA1dEY NW	TUA1dEY+TUB15 NW	TUA1dY+TUB9 NW	Pde NW	NWA:WT GA	NWBWT GA	TW:WT	TW:WT GA	NWA:OE-ARK2 GA	NWB:OE-ARK2 GA	TW:OE-ARK2	TW:OE-ARK2 GA	NWA:miRNA-ARK2 GA	NWB:miRNA-ARK2 GA	TW:miRNA-ARK2	TW:miRNA-ARK2 GA	TW 2hr	TW 8hr	TW 24hr	TW 48hr	TW 96hr	TW 336hr	WT ACC	35S::etr1-1 H20	35S::etr1-1 ACC	LMX5::etr1-1 H20	LMX5::etr1-1 ACC	WT-TW	TUA1dEY TW	TUA1dEY+TUB15 TW	TUA1dY+TUB9 TW	Pde TW	OW:WT	OW:WT GA	OW:OE-ARK2	OW:OE-ARK2 GA	OW:miRNA-ARK2	OW:miRNA-ARK2 GA	OW 2hr	OW 8hr	OW 24hr	OW 48hr	OW 96hr	OW 336hr	Root CTR	Root LongCold	Root LongDrougt	Root LongHeat	Root LongSalt	Root ShortCold	Root ShortDrougt	Root ShortHeat	Root ShortSalt	Ptr root	Leaf CTR	Leaf LongCold	Leaf LongDrougt	Leaf LongHeat	Leaf LongSalt	Leaf ShortCold	Leaf ShortDrougt	Leaf ShortHeat	Leaf ShortSalt	Ptr leaf	Stem CTR	Stem LongCold	Stem LongDrougt	Stem LongHeat	Stem LongSalt	Stem ShortCold	Stem ShortDrougt	Stem ShortHeat	Stem ShortSalt	Ptr shoot	Ptr xylem	Ptr phloem	Ptr fiber	Ptr vessel	Ptr fiber vessel ray
AT1G22640	MYB	AtMYB3	ARABIDOPSIS THALIANA MYB DOMA...		Potri.003G144300 [exp]	0	1	MYB153
AT3G19000			2-oxoglutarate (2OG) and Fe(II...		Potri.012G069200 [exp]	2.00	0.9663
AT1G16310			Cation efflux family protein (...		Potri.010G172700 [exp]	10.48	0.9407
AT1G05260		RCI3A, RCI3	RARE COLD INDUCIBLE GENE 3, Pe...		Potri.012G042800 [exp]	15.29	0.9384
AT1G24020		MLP423	MLP-like protein 423 (.1.2)		Potri.004G033000 [exp]	18.86	0.9352
AT2G35930		PUB23	plant U-box 23 (.1)		Potri.002G174500 [exp]	23.13	0.9351
AT4G22880		TT18, TDS4, ANS...	TANNIN DEFICIENT SEED 4, ANTHO...		Potri.003G119100 [exp]	24.26	0.9201	Pt-ANS.2
AT1G68940			Armadillo/beta-catenin-like re...		Potri.010G136500 [exp]	24.97	0.9343
AT4G30170			Peroxidase family protein (.1)		Potri.018G089900 [exp]	25.45	0.9337
AT1G14920	GRAS	RGA2, GAI	RESTORATION ON GROWTH ON AMMON...		Potri.016G027800 [exp]	28.24	0.9337
AT5G48810		B5#3, ATB5-B, A...	ARABIDOPSIS CYTOCHROME B5 ISOF...		Potri.014G019200 [exp]	29.81	0.8844

Compare expression of checked genes

Potri.003G144300 coexpression network

*The number of genes in the network is adjusted within 50 genes.
*Gene name represents symbol(s) of closest Arabidopsis gene if symbol(s) for the gene itself doesn't exist.
*Circle diameter represents the number of connection with other genes within this network.
*Color for gene name represents subnetwork based on the result of network clustering.