Plant FIBer expression Database

External link	JGI Phytozome v13 [genome browser] Popgenie AspWood
Symbol
Arabidopsis homologues Show only best Show top 10	Locus ID BLAST score/e-value TF class Alias TAIR10 short description AT2G30070 831 / 0 ATKUP1, ATKT1P, ATKT1 POTASSIUM UPTAKE TRANSPORTER 1, potassium transporter 1 (.1) AT1G70300 768 / 0 KUP6 K+ uptake permease 6, K+ uptake permease 6 (.1) AT5G14880 763 / 0 Potassium transporter family protein (.1) AT3G02050 759 / 0 ATKT4, ATKUP3, KUP3 K+ uptake transporter 3, ARABIDOPSIS THALIANA POTASSIUM TRANSPORTER 4, K+ uptake transporter 3 (.1) AT2G40540 759 / 0 ATKUP2, ATKT2, TRK2, SHY3, KT2 potassium transporter 2 (.1.2) AT4G23640 695 / 0 ATKT3, KUP4, TRH1 TINY ROOT HAIR 1, Potassium transporter family protein (.1) AT1G60160 654 / 0 Potassium transporter family protein (.1) AT4G13420 632 / 0 HAK5, ATHAK5 high affinity K+ transporter 5, ARABIDOPSIS THALIANA HIGH AFFINITY K+ TRANSPORTER 5, high affinity K+ transporter 5 (.1) AT2G35060 627 / 0 KUP11 K+ uptake permease 11, K+ uptake permease 11 (.1), K+ uptake permease 11 (.2) AT1G31120 615 / 0 KUP10 K+ uptake permease 10, K+ uptake permease 10 (.1)
Paralogs Show only best Show top 10	Gene ID BLAST score/e-value At best hit BLAST score/e-value TAIR10 short description Potri.005G095900 [exp] 974 / 0 AT2G30070 769 / 0.0 POTASSIUM UPTAKE TRANSPORTER 1, potassium transporter 1 (.1) Potri.014G144900 [exp] 812 / 0 AT3G02050 1175 / 0.0 K+ uptake transporter 3, ARABIDOPSIS THALIANA POTASSIUM TRANSPORTER 4, K+ uptake transporter 3 (.1) Potri.009G073500 [exp] 811 / 0 AT2G30070 1092 / 0.0 POTASSIUM UPTAKE TRANSPORTER 1, potassium transporter 1 (.1) Potri.008G147400 [exp] 806 / 0 AT1G70300 1221 / 0.0 K+ uptake permease 6, K+ uptake permease 6 (.1) Potri.002G237500 [exp] 806 / 0 AT3G02050 1179 / 0.0 K+ uptake transporter 3, ARABIDOPSIS THALIANA POTASSIUM TRANSPORTER 4, K+ uptake transporter 3 (.1) Potri.010G094300 [exp] 800 / 0 AT1G70300 1228 / 0.0 K+ uptake permease 6, K+ uptake permease 6 (.1) Potri.019G056500 [exp] 761 / 0 AT2G40540 1272 / 0.0 potassium transporter 2 (.1.2) Potri.013G083400 [exp] 739 / 0 AT2G40540 1225 / 0.0 potassium transporter 2 (.1.2) Potri.003G133900 [exp] 720 / 0 AT4G23640 947 / 0.0 TINY ROOT HAIR 1, Potassium transporter family protein (.1)
Flax homologues Show only best Show top 10	Locus ID BLAST score/e-value At best hit BLAST score/e-value TAIR10 short description Lus10030857 [exp] 806 / 0 AT1G70300 1249 / 0.0 K+ uptake permease 6, K+ uptake permease 6 (.1) Lus10030632 [exp] 797 / 0 AT1G70300 1238 / 0.0 K+ uptake permease 6, K+ uptake permease 6 (.1) Lus10018270 [exp] 768 / 0 AT2G40540 652 / 0.0 potassium transporter 2 (.1.2) Lus10012992 [exp] 737 / 0 AT1G70300 1188 / 0.0 K+ uptake permease 6, K+ uptake permease 6 (.1) Lus10030539 [exp] 733 / 0 AT2G40540 1245 / 0.0 potassium transporter 2 (.1.2) Lus10034215 [exp] 723 / 0 AT2G40540 1239 / 0.0 potassium transporter 2 (.1.2) Lus10018324 [exp] 661 / 0 AT2G35060 1212 / 0.0 K+ uptake permease 11, K+ uptake permease 11 (.1), K+ uptake permease 11 (.2) Lus10014531 [exp] 655 / 0 AT5G14880 1098 / 0.0 Potassium transporter family protein (.1) Lus10038361 [exp] 623 / 0 AT2G35060 1164 / 0.0 K+ uptake permease 11, K+ uptake permease 11 (.1), K+ uptake permease 11 (.2) Lus10036221 [exp] 619 / 0 AT2G35060 1173 / 0.0 K+ uptake permease 11, K+ uptake permease 11 (.1), K+ uptake permease 11 (.2)
PFAM info	Clan ID Clan name Pfam ID Pfam name Pfam description CL0062 [poplar] [flax] APC PF02705 [poplar] [flax] K_trans K+ potassium transporter
Representative CDS sequence Show only first row Show all	>Potri.003G148200.1 pacid=42787170 polypeptide=Potri.003G148200.1.p locus=Potri.003G148200 ID=Potri.003G148200.1.v4.1 annot-version=v4.1 ATGGAACTTGAATCCGGTTCCACGAACCGGCAATCTAGATTGAAACTTTATAAAAGTACTTTGATTCTAGCGTACCAGAGTTTTGGTGTGGTATATGGTG ACCTTAGCACATCACCAATTTATGTCTACACAAGTACCTTTTCGGGGAGATTGAGACTTCACGAGGACGACGATGAAATTCTCGGGGTACTTTCTTTGGT TTTCTGGACTTTGACTTTAATCCCTCTCTGCAAGTACATTGTATTTGTATTAGGGGCTGATGATAATGGAGAAGGAGGGACATTTGCCTTGTATTCATTA CTTTGTCGCCGTGCAAAGTTAGGACTTTTGCATCCTTCCCATTCGACAGACGATGACATATCTTCTCAAGACTCTTGTCAATTGATCAAAGAGACTAGGG CTAGTTCTCTTCTGAAGGAGTTCTTTGATAAGCATCATAGTTCTCGTGTTGTACTGCTGCTTATTGTGATTTTAGGGACTAGCATGGTTATAGCTGATGG TATCTTGACCCCATCAATGTCAGTCCTTTCGGCTGTATATGGCATCAAAACCAAGGCTGGAGGTCTGCATGACAGTTATGCTGTTTTGATAACCTGCCTG ATTTTGGTAGGCCTCTTTGCCCTTCAGCATATTGGGACACATAGGGTTGGCTTCCTTTTTGCTCCTATCATCTTATTGTGGCTATTATCCATTAGTGGGG TTGGTATTTACAACATAATTCAGTGGAATCCTCGTGTTGTGAGTGCTCTGTCACCATATTACGTGTACAAGCTGTTCAAATTGACAGGAAAGGATGGGTG GACTTCTCTTGGAGGCATTGTCCTTTGCATTACAGGTGCGGAGGCTATGTTTGCTGACCTTGGTCATTTCTCTCAGCTTTCAATCAGGATTGCATTCACC GCAATTATTTATCCTAGCTTGATTCTGGCTTATATGGGTGAAGCTGCTTATCTCTCTAAGCACAAAGAGGACCTTCAGAGAAGCTTCTACAGAGCAATCC CTGAGGTTGTATTTTGGCCAGTATTTATCATTGCAACTCTTGCAACAGTGGTGGCAAGTCAGGCAGTCATATCTGCCACTTTCTCGATTATCAGCCAGTG TTGGGCACTGAAGTGCTTCCCTCGTGTTAAGATAATACACACATCAAATCAAATGCATGGGCAGATATACATACCGGAGGTGAACTGGATGTTGATGGTT TTTTGCCTTCTTGTTGTGATCGGCTTTAGGGACACAGATATGATAGCCAATGCATATGGTCTCACAGTTGTCATTGTAATGTTTGTTACCACCTGCTTGA TGTTTCTTGTCATTGTTATGGTCTGGAAGCGGAATATTCTGGCAGCATTTATTTTTGTAACTGTTTTTGGATTTGTAGAGTTGCTCTACTTGTCTTCTTG CCTGGCCAAAGTGGCCAAAGGTGGCTGGATCCCTCTCATTTTCTCCCTAATAGCTTTGTCTGTGATGTACATCTGGCACTATGGGACGTTACAGAAACAA TCATTCGAGTCACATAACAGAACATCTTTGGATATGCTTCTTAGTCTGGGCCCAAATGTTGGTATAAATCGTGTTCGTGGCATTGGCCTAATCTATACAA ATGTGCTCTCAGGGATCCCGCCAATGTTTTCACATTTTGTCACCAGCTTTCCCGCCTTCCACCAAGTCCTCATATTTGTAACATTTCAATTCCTGACAAC TCCAAGAGTTTCTGCCAATCAGCGTTTTATTGTAAGCCGCATTGGTCCCGCAGAGTTCCGTCTCTATCGGTGCATTGTCAGGTTTGGTTATAAGGATGCA AGGAAGGATAGTTATGCTTTCGAGACCGACCTGATTGAAACTGTGAGAGTGTTCTTGCAGCACGAGAGTGATGATGGTGATGCTAGAGACTCAGTAAGTG AAATGCCTGTAAATCAGCACGAATCAGACTGTCTACGGGATGATGTTAGCATGAGAGCTGAGAATGGTTCTGGGGCTGGGTTGACTAGATGCAAGAGAGT AAGATTTTGTGGTGTCGACAATAGTAAGGAATTGGAGGACCTGGAGGATGCCCGGGAAGCTGGTCTGGCATATATGATGGGCAATACTTGTGTCTTGGCA AGGGAAACATCATCAGTTGTGAAGAAATTTGCCATTAACATTGTATATGGTTTCTTGAGACGGAACTGTCGGAGCCCATCAACAGCACTAGGGGTTCCTC ATACATCTTTGATTGAAGTAGGAATGGCTTATCGAGTTTAA
AA sequence Show only first row Show all	>Potri.003G148200.1 pacid=42787170 polypeptide=Potri.003G148200.1.p locus=Potri.003G148200 ID=Potri.003G148200.1.v4.1 annot-version=v4.1 MELESGSTNRQSRLKLYKSTLILAYQSFGVVYGDLSTSPIYVYTSTFSGRLRLHEDDDEILGVLSLVFWTLTLIPLCKYIVFVLGADDNGEGGTFALYSL LCRRAKLGLLHPSHSTDDDISSQDSCQLIKETRASSLLKEFFDKHHSSRVVLLLIVILGTSMVIADGILTPSMSVLSAVYGIKTKAGGLHDSYAVLITCL ILVGLFALQHIGTHRVGFLFAPIILLWLLSISGVGIYNIIQWNPRVVSALSPYYVYKLFKLTGKDGWTSLGGIVLCITGAEAMFADLGHFSQLSIRIAFT AIIYPSLILAYMGEAAYLSKHKEDLQRSFYRAIPEVVFWPVFIIATLATVVASQAVISATFSIISQCWALKCFPRVKIIHTSNQMHGQIYIPEVNWMLMV FCLLVVIGFRDTDMIANAYGLTVVIVMFVTTCLMFLVIVMVWKRNILAAFIFVTVFGFVELLYLSSCLAKVAKGGWIPLIFSLIALSVMYIWHYGTLQKQ SFESHNRTSLDMLLSLGPNVGINRVRGIGLIYTNVLSGIPPMFSHFVTSFPAFHQVLIFVTFQFLTTPRVSANQRFIVSRIGPAEFRLYRCIVRFGYKDA RKDSYAFETDLIETVRVFLQHESDDGDARDSVSEMPVNQHESDCLRDDVSMRAENGSGAGLTRCKRVRFCGVDNSKELEDLEDAREAGLAYMMGNTCVLA RETSSVVKKFAINIVYGFLRRNCRSPSTALGVPHTSLIEVGMAYRV

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DESeq2's median of ratios [POPLAR]

Mapped by: StringTie Salmon Order by: Tissue Experiment Show only core collection Show again Show schematic diagram

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Coexpressed genes

Compare expression of checked genes Schematic diagram [FLAX] Schematic diagram [POPLAR]

*If you select 4 or less genes and then press "compare expression", expression will be shown as a graph. If you select more than 4 genes, expresion will be shown as a heat map.
*Color represents relative expression level among samples for each gene.

At best	At TF class	At alias	At description		Locus	MR	r	Symbol	NWA:WT	NWB:WT	NWA:OE-ARK2	NWB:OE-ARK2	NWA:miRNA-ARK2	NWB:miRNA-ARK2	NW 0hr	WT H20	WT-NW	TUA1dEY NW	TUA1dEY+TUB15 NW	TUA1dY+TUB9 NW	Pde NW	NWA:WT GA	NWBWT GA	TW:WT	TW:WT GA	NWA:OE-ARK2 GA	NWB:OE-ARK2 GA	TW:OE-ARK2	TW:OE-ARK2 GA	NWA:miRNA-ARK2 GA	NWB:miRNA-ARK2 GA	TW:miRNA-ARK2	TW:miRNA-ARK2 GA	TW 2hr	TW 8hr	TW 24hr	TW 48hr	TW 96hr	TW 336hr	WT ACC	35S::etr1-1 H20	35S::etr1-1 ACC	LMX5::etr1-1 H20	LMX5::etr1-1 ACC	WT-TW	TUA1dEY TW	TUA1dEY+TUB15 TW	TUA1dY+TUB9 TW	Pde TW	OW:WT	OW:WT GA	OW:OE-ARK2	OW:OE-ARK2 GA	OW:miRNA-ARK2	OW:miRNA-ARK2 GA	OW 2hr	OW 8hr	OW 24hr	OW 48hr	OW 96hr	OW 336hr	Root CTR	Root LongCold	Root LongDrougt	Root LongHeat	Root LongSalt	Root ShortCold	Root ShortDrougt	Root ShortHeat	Root ShortSalt	Ptr root	Leaf CTR	Leaf LongCold	Leaf LongDrougt	Leaf LongHeat	Leaf LongSalt	Leaf ShortCold	Leaf ShortDrougt	Leaf ShortHeat	Leaf ShortSalt	Ptr leaf	Stem CTR	Stem LongCold	Stem LongDrougt	Stem LongHeat	Stem LongSalt	Stem ShortCold	Stem ShortDrougt	Stem ShortHeat	Stem ShortSalt	Ptr shoot	Ptr xylem	Ptr phloem	Ptr fiber	Ptr vessel	Ptr fiber vessel ray
AT2G30070		ATKUP1, ATKT1P,...	POTASSIUM UPTAKE TRANSPORTER 1...		Potri.003G148200 [exp]	0	1
AT5G39450			F-box family protein (.1)		Potri.005G067300 [exp]	5.65	0.8627
AT1G80300		ATNTT1	nucleotide transporter 1 (.1)		Potri.001G175200 [exp]	9.38	0.8574	AATP1.1,PtrAATP1
AT2G23450			Protein kinase superfamily pro...		Potri.007G034500 [exp]	11.00	0.8243
AT1G34420			leucine-rich repeat transmembr...		Potri.013G114200 [exp]	13.52	0.8495
AT5G61380		AtTOC1, TOC1, A...	PSEUDO-RESPONSE REGULATOR 1, T...		Potri.015G061900 [exp]	18.54	0.8347
AT2G39200		ATMLO12, MLO12	MILDEW RESISTANCE LOCUS O 12, ...		Potri.004G050000 [exp]	20.04	0.8385
AT2G23150		ATNRAMP3, NRAMP...	natural resistance-associated ...		Potri.007G050600 [exp]	22.29	0.7875	Pt-NRAMP3.1
AT3G12360		ITN1	INCREASED TOLERANCE TO NACL, A...		Potri.010G212700 [exp]	26.49	0.8121
AT4G25160			U-box domain-containing protei...		Potri.004G233000 [exp]	29.52	0.8471
AT2G24100		ASG1	ALTERED SEED GERMINATION 1, un...		Potri.001G041800 [exp]	30.29	0.8172

Compare expression of checked genes

Potri.003G148200 coexpression network

*The number of genes in the network is adjusted within 50 genes.
*Gene name represents symbol(s) of closest Arabidopsis gene if symbol(s) for the gene itself doesn't exist.
*Circle diameter represents the number of connection with other genes within this network.
*Color for gene name represents subnetwork based on the result of network clustering.