Plant FIBer expression Database

External link	JGI Phytozome v13 [genome browser] Popgenie AspWood
Symbol
Arabidopsis homologues Show only best Show top 10	Locus ID BLAST score/e-value TF class Alias TAIR10 short description AT5G43470 421 / 3e-133 HRT, RCY1, RPP8 RECOGNITION OF PERONOSPORA PARASITICA 8, RESISTANT TO CMV\(Y\) 1, HYPERSENSITIVE RESPONSE TO TCV, Disease resistance protein (CC-NBS-LRR class) family (.1), Disease resistance protein (CC-NBS-LRR class) family (.2) AT1G53350 421 / 1e-132 Disease resistance protein (CC-NBS-LRR class) family (.1) AT5G35450 417 / 1e-131 Disease resistance protein (CC-NBS-LRR class) family (.1) AT5G48620 410 / 4e-129 Disease resistance protein (CC-NBS-LRR class) family (.1) AT1G58390 389 / 7e-121 Disease resistance protein (CC-NBS-LRR class) family (.1) AT1G50180 382 / 4e-119 NB-ARC domain-containing disease resistance protein (.1) AT1G58410 375 / 9e-116 Disease resistance protein (CC-NBS-LRR class) family (.1) AT1G58400 370 / 6e-114 Disease resistance protein (CC-NBS-LRR class) family (.1) AT3G46730 363 / 6e-112 NB-ARC domain-containing disease resistance protein (.1) AT1G59620 356 / 2e-109 CW9 Disease resistance protein (CC-NBS-LRR class) family (.1)
Paralogs Show only best Show top 10	Gene ID BLAST score/e-value At best hit BLAST score/e-value TAIR10 short description Potri.003G150200 [exp] 1360 / 0 AT5G43470 420 / 2e-132 RECOGNITION OF PERONOSPORA PARASITICA 8, RESISTANT TO CMV\(Y\) 1, HYPERSENSITIVE RESPONSE TO TCV, Disease resistance protein (CC-NBS-LRR class) family (.1), Disease resistance protein (CC-NBS-LRR class) family (.2) Potri.018G138500 [exp] 509 / 1e-166 AT1G50180 617 / 0.0 NB-ARC domain-containing disease resistance protein (.1) Potri.002G216800 [exp] 423 / 7e-134 AT3G07040 573 / 0.0 RESISTANCE TO PSEUDOMONAS SYRINGAE 3, RESISTANCE TO P. SYRINGAE PV MACULICOLA 1, NB-ARC domain-containing disease resistance protein (.1) Potri.001G134500 [exp] 417 / 3e-131 AT3G07040 422 / 1e-132 RESISTANCE TO PSEUDOMONAS SYRINGAE 3, RESISTANCE TO P. SYRINGAE PV MACULICOLA 1, NB-ARC domain-containing disease resistance protein (.1) Potri.018G013500 [exp] 404 / 2e-126 AT3G07040 484 / 7e-157 RESISTANCE TO PSEUDOMONAS SYRINGAE 3, RESISTANCE TO P. SYRINGAE PV MACULICOLA 1, NB-ARC domain-containing disease resistance protein (.1) Potri.003G099100 [exp] 390 / 3e-121 AT3G07040 482 / 8e-156 RESISTANCE TO PSEUDOMONAS SYRINGAE 3, RESISTANCE TO P. SYRINGAE PV MACULICOLA 1, NB-ARC domain-containing disease resistance protein (.1) Potri.001G134400 [exp] 391 / 4e-121 AT3G07040 427 / 3e-134 RESISTANCE TO PSEUDOMONAS SYRINGAE 3, RESISTANCE TO P. SYRINGAE PV MACULICOLA 1, NB-ARC domain-containing disease resistance protein (.1) Potri.001G134300 [exp] 387 / 9e-120 AT3G07040 487 / 2e-157 RESISTANCE TO PSEUDOMONAS SYRINGAE 3, RESISTANCE TO P. SYRINGAE PV MACULICOLA 1, NB-ARC domain-containing disease resistance protein (.1) Potri.001G134450 [exp] 386 / 2e-119 AT3G07040 488 / 1e-157 RESISTANCE TO PSEUDOMONAS SYRINGAE 3, RESISTANCE TO P. SYRINGAE PV MACULICOLA 1, NB-ARC domain-containing disease resistance protein (.1)
Flax homologues Show only best Show top 10	Locus ID BLAST score/e-value At best hit BLAST score/e-value TAIR10 short description Lus10014922 [exp] 383 / 2e-118 AT3G07040 523 / 1e-171 RESISTANCE TO PSEUDOMONAS SYRINGAE 3, RESISTANCE TO P. SYRINGAE PV MACULICOLA 1, NB-ARC domain-containing disease resistance protein (.1) Lus10020016 [exp] 321 / 2e-95 AT3G07040 563 / 0.0 RESISTANCE TO PSEUDOMONAS SYRINGAE 3, RESISTANCE TO P. SYRINGAE PV MACULICOLA 1, NB-ARC domain-containing disease resistance protein (.1) Lus10002945 [exp] 312 / 3e-92 AT3G07040 580 / 0.0 RESISTANCE TO PSEUDOMONAS SYRINGAE 3, RESISTANCE TO P. SYRINGAE PV MACULICOLA 1, NB-ARC domain-containing disease resistance protein (.1) Lus10028639 [exp] 309 / 5e-91 AT3G07040 579 / 0.0 RESISTANCE TO PSEUDOMONAS SYRINGAE 3, RESISTANCE TO P. SYRINGAE PV MACULICOLA 1, NB-ARC domain-containing disease resistance protein (.1) Lus10018937 [exp] 308 / 2e-90 AT3G07040 587 / 0.0 RESISTANCE TO PSEUDOMONAS SYRINGAE 3, RESISTANCE TO P. SYRINGAE PV MACULICOLA 1, NB-ARC domain-containing disease resistance protein (.1) Lus10038983 [exp] 303 / 9e-89 AT3G07040 468 / 5e-150 RESISTANCE TO PSEUDOMONAS SYRINGAE 3, RESISTANCE TO P. SYRINGAE PV MACULICOLA 1, NB-ARC domain-containing disease resistance protein (.1) Lus10041243 [exp] 295 / 6e-86 AT3G07040 526 / 1e-172 RESISTANCE TO PSEUDOMONAS SYRINGAE 3, RESISTANCE TO P. SYRINGAE PV MACULICOLA 1, NB-ARC domain-containing disease resistance protein (.1) Lus10027281 [exp] 289 / 7e-84 AT3G07040 459 / 5e-147 RESISTANCE TO PSEUDOMONAS SYRINGAE 3, RESISTANCE TO P. SYRINGAE PV MACULICOLA 1, NB-ARC domain-containing disease resistance protein (.1) Lus10014712 [exp] 265 / 6e-75 AT3G07040 492 / 3e-159 RESISTANCE TO PSEUDOMONAS SYRINGAE 3, RESISTANCE TO P. SYRINGAE PV MACULICOLA 1, NB-ARC domain-containing disease resistance protein (.1) Lus10039509 [exp] 226 / 5e-61 AT3G14460 613 / 0.0 LRR and NB-ARC domains-containing disease resistance protein (.1)
PFAM info	Clan ID Clan name Pfam ID Pfam name Pfam description CL0023 [poplar] [flax] P-loop_NTPase PF00931 [poplar] [flax] NB-ARC NB-ARC domain
Representative CDS sequence Show only first row Show all	>Potri.003G149800.1 pacid=42786159 polypeptide=Potri.003G149800.1.p locus=Potri.003G149800 ID=Potri.003G149800.1.v4.1 annot-version=v4.1 ATGGCTGAAGCTGCCGTTTCCTTTGTTCTTGAAAGGCTTGCTGATCTGTTTGATGAACTTGAATTTCACACCGATGTCCATAAAGAAGTTGAGCGGTTAC AAGATGAACTCAGGAGGATCCGTTGCTTCTTAAGAGATGCGGACGCAAAGCAAGATGAAGATGAAAGAGTGCGTAATTGGGTGTCTGATATCAGAGACGT GGCTTATGATGCTGAAGATCTCATAGACAGGTTTATCATGAACAATGATCCTCTGAAGAAGAAGAAGAAGAATCATTTTATCAAGAAATGCACTTCCTAT GTCAAAGGATGGAAACAGAGGTCCAAGATTGCTGAGGATCTCATGGCCATCCGTTCAAGACTTCAAGACATCTCAGCCAGCCGTGAAACTTATGGCATCC AAAATGTTGGAGAGGGGACTACTGCAGCAGGTGAGACTCTGAGGAAGTTGAGAAGATCGTCTCCTCGCGATGAGGAAAGGGATATTGTTGGCTTGGAGGA TGACACCGCTAAACTGGTGGACCACCTTCTTCAGATGGGGGATCATTGGAGTGCTGTTTCGATAGTTGGAATGGGCGGTATTGGTAAAACCACTCTTGGT ATAAAGATATATAATCATAGTGCTGTCAGGGCTCGCTTTCCTTCCCGTGCTTGGATATGTGTATCACAGGAGTTTAGTGCAAGAGATATTCTGCAGCGAG TCATAAGACAAATTGCATCGCCGAGAGAAAGGCTTGAAGCTTTGACAGATGAAGAGTTGGAGGACTTGGTGTATGAAAATTTACGGAGGAAACGCTATCT GGTTGTTTTGGATGATATCTGGAGCACCAATGCCTGGGATTGCCTTAAAAAGGCCTTTCCTGTAGACAGAAGTAACGGTAGCAGATTGTTGCTCACGACT CGGAACAAGAATGTTGCTCTTCATGTAGATCCTCAAACTACTCCCTACGATTTGGGATTTCTAAGCAAACAGAATAGCTGGGAGTTGTTCTGCAAGAAAA CATTTATTGATGGCAGAGACACAAGTTGCTCTCCAATATTGGAGGAAATCGGGAGAGAGATTGTGGAGAGATGTGCTGGTTTACCACTTGCCATCATTGT AATTGGCGGCTTACTTTCAAGAAAAAAGAGGCTGAATGAATGGGAAAGAATTCTTAACAACATGGACTCTCATTTTGCTCGACACCCAAATGGCGTTGCG GCAATACTTGCTTTGAGTTACAACGACTTGCCGTATTACTTGAAATCTTGTTTTCTTTATTTAGGCCTTTTCCCAGAAGATTGTACTATTCAGGCACACA AATTGTTTCGGCTATGGGTGGCAGAGGGTTTGATTCCACATCAAGAACTAAGAGGGGAGGATGTAGCAGAGGATTACTTGAATGAGCTAATTGAGAGAAA CATGGTTCAGATGGAAGGAATGAGTGTCAATGGGAGGGTCAAGCAATGCCGTTTGCACGATCTACTGCGAGACCTCTCCATCTCCAAGGCAAAGACGGAG AATTTTCTCCAGATTCCTGGTAATGAAAATATCCCATCTTTGACTAGATGTCGTCGCCATCCTATCTATTCTGATTCTCATTTATCTTGTGTGGAACGTC TTAGTCCACATCTTCGTTCACTCCTGTTCTTTAGAGTTGTTAGTCGTGTTCGTTACAGATATTTTATCGGCAGAAACGTCTATGGTTTCTGCGAATTATC GGGTGCCAAATTCGATTATATTACCAGGAATTTCAACCTGCTAAGAATTCTTGAGTTGGAGGGTATATCATGTAGCAGCATCCCAAGTACAATTGGTGAA CTGATACATTTGAGTTACTTGGGATTGAAGGAGACTAACATACGAGTGCTTCCATCAACATTAGGTTCTCTGTGCAACCTGCAGACTCTTGATATTGCTG GGAATCTCCATCTTAGGATAATTCCTGATGTCATTTGCAACATGAAAAATTTGAGACATCTTTACATGTGTGGGCATTCTGGTGGGCACCTGAGGATAGA CACCCTCAAGCATTTACAGACACTGACAGAGATAGATGTCAGCAGATGGAAGCAGAACAACACTGCAGATCTAGTCAGTCTTCGAAAATTAGGAATAAGA GGAAACCTCTGCTCAGACACCATTAAGATATTTGATTCCATTTCGGCACTCTTGCAACTTCGATCTCTCTATCTTCGTGCTGAAGGTGCTGAATTTCCAT CACTTGTTCAACTTGGTTCTCTTCGCTCTCTCATCAAGCTGCATTTGAGAGGGGGAATATCACAGCTGCCCAGCCAGCAAGATTTTCCACCAAATCTCTC CCAGTTAACATTAGAGCACACCCAGCTTGAACAAGAATCAATAGAGATACTAGAGAAGCTGCCAAAATTATCAATTCTGAGGTTTAAAGCAGAGTCTTAT AGCAAAGAAAAACTAACAATCTCTGCCGATGGGTTTCCTCAACTGGAGTTCCTAGAGTTTAACAGCTTGGAATCCCTGCATGAATTCAACATAGAAGAAA ATGCAGTGCCAAGGCTTGAAAGTTTCCTAATTGTCAACTGCAAGGGGCTAAGGATGCTCCCTGAAGAGATGAGATTTGTGGCCACTCTCCATAAGTTGGT TATTGAAGAGATGCCCAAAGTCTTTGTAGATAGGCTTCAAGGAGAAGATCTTCATAAAGTGCAGCACATTCCTTTGATCAAATTTATATGA
AA sequence Show only first row Show all	>Potri.003G149800.1 pacid=42786159 polypeptide=Potri.003G149800.1.p locus=Potri.003G149800 ID=Potri.003G149800.1.v4.1 annot-version=v4.1 MAEAAVSFVLERLADLFDELEFHTDVHKEVERLQDELRRIRCFLRDADAKQDEDERVRNWVSDIRDVAYDAEDLIDRFIMNNDPLKKKKKNHFIKKCTSY VKGWKQRSKIAEDLMAIRSRLQDISASRETYGIQNVGEGTTAAGETLRKLRRSSPRDEERDIVGLEDDTAKLVDHLLQMGDHWSAVSIVGMGGIGKTTLG IKIYNHSAVRARFPSRAWICVSQEFSARDILQRVIRQIASPRERLEALTDEELEDLVYENLRRKRYLVVLDDIWSTNAWDCLKKAFPVDRSNGSRLLLTT RNKNVALHVDPQTTPYDLGFLSKQNSWELFCKKTFIDGRDTSCSPILEEIGREIVERCAGLPLAIIVIGGLLSRKKRLNEWERILNNMDSHFARHPNGVA AILALSYNDLPYYLKSCFLYLGLFPEDCTIQAHKLFRLWVAEGLIPHQELRGEDVAEDYLNELIERNMVQMEGMSVNGRVKQCRLHDLLRDLSISKAKTE NFLQIPGNENIPSLTRCRRHPIYSDSHLSCVERLSPHLRSLLFFRVVSRVRYRYFIGRNVYGFCELSGAKFDYITRNFNLLRILELEGISCSSIPSTIGE LIHLSYLGLKETNIRVLPSTLGSLCNLQTLDIAGNLHLRIIPDVICNMKNLRHLYMCGHSGGHLRIDTLKHLQTLTEIDVSRWKQNNTADLVSLRKLGIR GNLCSDTIKIFDSISALLQLRSLYLRAEGAEFPSLVQLGSLRSLIKLHLRGGISQLPSQQDFPPNLSQLTLEHTQLEQESIEILEKLPKLSILRFKAESY SKEKLTISADGFPQLEFLEFNSLESLHEFNIEENAVPRLESFLIVNCKGLRMLPEEMRFVATLHKLVIEEMPKVFVDRLQGEDLHKVQHIPLIKFI

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DESeq2's median of ratios [POPLAR]

Mapped by: StringTie Salmon Order by: Tissue Experiment Show only core collection Show again Show schematic diagram

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Coexpressed genes

Compare expression of checked genes Schematic diagram [FLAX] Schematic diagram [POPLAR]

*If you select 4 or less genes and then press "compare expression", expression will be shown as a graph. If you select more than 4 genes, expresion will be shown as a heat map.
*Color represents relative expression level among samples for each gene.

At best	At TF class	At alias	At description		Locus	MR	r	Symbol	NWA:WT	NWB:WT	NWA:OE-ARK2	NWB:OE-ARK2	NWA:miRNA-ARK2	NWB:miRNA-ARK2	NW 0hr	WT H20	WT-NW	TUA1dEY NW	TUA1dEY+TUB15 NW	TUA1dY+TUB9 NW	Pde NW	NWA:WT GA	NWBWT GA	TW:WT	TW:WT GA	NWA:OE-ARK2 GA	NWB:OE-ARK2 GA	TW:OE-ARK2	TW:OE-ARK2 GA	NWA:miRNA-ARK2 GA	NWB:miRNA-ARK2 GA	TW:miRNA-ARK2	TW:miRNA-ARK2 GA	TW 2hr	TW 8hr	TW 24hr	TW 48hr	TW 96hr	TW 336hr	WT ACC	35S::etr1-1 H20	35S::etr1-1 ACC	LMX5::etr1-1 H20	LMX5::etr1-1 ACC	WT-TW	TUA1dEY TW	TUA1dEY+TUB15 TW	TUA1dY+TUB9 TW	Pde TW	OW:WT	OW:WT GA	OW:OE-ARK2	OW:OE-ARK2 GA	OW:miRNA-ARK2	OW:miRNA-ARK2 GA	OW 2hr	OW 8hr	OW 24hr	OW 48hr	OW 96hr	OW 336hr	Root CTR	Root LongCold	Root LongDrougt	Root LongHeat	Root LongSalt	Root ShortCold	Root ShortDrougt	Root ShortHeat	Root ShortSalt	Ptr root	Leaf CTR	Leaf LongCold	Leaf LongDrougt	Leaf LongHeat	Leaf LongSalt	Leaf ShortCold	Leaf ShortDrougt	Leaf ShortHeat	Leaf ShortSalt	Ptr leaf	Stem CTR	Stem LongCold	Stem LongDrougt	Stem LongHeat	Stem LongSalt	Stem ShortCold	Stem ShortDrougt	Stem ShortHeat	Stem ShortSalt	Ptr shoot	Ptr xylem	Ptr phloem	Ptr fiber	Ptr vessel	Ptr fiber vessel ray
AT5G43470		HRT, RCY1, RPP8	RECOGNITION OF PERONOSPORA PAR...		Potri.003G149800 [exp]	0	1
AT5G66900			Disease resistance protein (CC...		Potri.007G039100 [exp]	1.73	0.9181
AT1G27200			Domain of unknown function (DU...		Potri.010G039000 [exp]	2.64	0.8902
AT2G19710			Regulator of Vps4 activity in ...		Potri.006G149800 [exp]	2.82	0.8990
AT2G40000		ATHSPRO2	ARABIDOPSIS ORTHOLOG OF SUGAR ...		Potri.010G191300 [exp]	3.74	0.9075
AT5G66900			Disease resistance protein (CC...		Potri.007G038900 [exp]	4.47	0.8968
AT2G40140	C3HZnF	ATSZF2, CZF1, Z...	\(SALT-INDUCIBLE ZINC FINGER 2...		Potri.008G069400 [exp]	6.24	0.9043
AT1G07530	GRAS	SCL14, ATGRAS2	GRAS \(GAI, RGA, SCR\) 2, ARAB...		Potri.001G241800 [exp]	7.48	0.8901
					Potri.008G085150 [exp]	7.68	0.8289
AT3G16720		ATL2	TOXICOS EN LEVADURA 2 (.1)		Potri.008G219200 [exp]	9.00	0.8873	ATL2.3
AT3G62420	bZIP	ATBZIP53	basic region/leucine zipper mo...		Potri.002G196200 [exp]	11.13	0.8276

Compare expression of checked genes

Potri.003G149800 coexpression network

*The number of genes in the network is adjusted within 50 genes.
*Gene name represents symbol(s) of closest Arabidopsis gene if symbol(s) for the gene itself doesn't exist.
*Circle diameter represents the number of connection with other genes within this network.
*Color for gene name represents subnetwork based on the result of network clustering.