Plant FIBer expression Database

External link	JGI Phytozome v13 [genome browser] Popgenie AspWood
Symbol
Arabidopsis homologues Show only best Show top 10	Locus ID BLAST score/e-value TF class Alias TAIR10 short description AT5G43470 420 / 2e-132 HRT, RCY1, RPP8 RECOGNITION OF PERONOSPORA PARASITICA 8, RESISTANT TO CMV\(Y\) 1, HYPERSENSITIVE RESPONSE TO TCV, Disease resistance protein (CC-NBS-LRR class) family (.1), Disease resistance protein (CC-NBS-LRR class) family (.2) AT1G53350 419 / 5e-132 Disease resistance protein (CC-NBS-LRR class) family (.1) AT5G35450 417 / 3e-131 Disease resistance protein (CC-NBS-LRR class) family (.1) AT5G48620 402 / 7e-126 Disease resistance protein (CC-NBS-LRR class) family (.1) AT1G50180 400 / 2e-125 NB-ARC domain-containing disease resistance protein (.1) AT1G58390 378 / 2e-116 Disease resistance protein (CC-NBS-LRR class) family (.1) AT1G58410 373 / 5e-115 Disease resistance protein (CC-NBS-LRR class) family (.1) AT1G58400 367 / 1e-112 Disease resistance protein (CC-NBS-LRR class) family (.1) AT1G59218 368 / 1e-111 Disease resistance protein (CC-NBS-LRR class) family (.1), Disease resistance protein (CC-NBS-LRR class) family (.2) AT1G58848 368 / 1e-111 Disease resistance protein (CC-NBS-LRR class) family (.1), Disease resistance protein (CC-NBS-LRR class) family (.2)
Paralogs Show only best Show top 10	Gene ID BLAST score/e-value At best hit BLAST score/e-value TAIR10 short description Potri.003G149800 [exp] 1358 / 0 AT5G43470 421 / 4e-133 RECOGNITION OF PERONOSPORA PARASITICA 8, RESISTANT TO CMV\(Y\) 1, HYPERSENSITIVE RESPONSE TO TCV, Disease resistance protein (CC-NBS-LRR class) family (.1), Disease resistance protein (CC-NBS-LRR class) family (.2) Potri.018G138500 [exp] 518 / 7e-170 AT1G50180 617 / 0.0 NB-ARC domain-containing disease resistance protein (.1) Potri.002G216800 [exp] 423 / 2e-133 AT3G07040 573 / 0.0 RESISTANCE TO PSEUDOMONAS SYRINGAE 3, RESISTANCE TO P. SYRINGAE PV MACULICOLA 1, NB-ARC domain-containing disease resistance protein (.1) Potri.001G134500 [exp] 416 / 1e-130 AT3G07040 422 / 1e-132 RESISTANCE TO PSEUDOMONAS SYRINGAE 3, RESISTANCE TO P. SYRINGAE PV MACULICOLA 1, NB-ARC domain-containing disease resistance protein (.1) Potri.018G013500 [exp] 412 / 1e-129 AT3G07040 484 / 7e-157 RESISTANCE TO PSEUDOMONAS SYRINGAE 3, RESISTANCE TO P. SYRINGAE PV MACULICOLA 1, NB-ARC domain-containing disease resistance protein (.1) Potri.003G099100 [exp] 389 / 1e-120 AT3G07040 482 / 8e-156 RESISTANCE TO PSEUDOMONAS SYRINGAE 3, RESISTANCE TO P. SYRINGAE PV MACULICOLA 1, NB-ARC domain-containing disease resistance protein (.1) Potri.001G134300 [exp] 385 / 7e-119 AT3G07040 487 / 2e-157 RESISTANCE TO PSEUDOMONAS SYRINGAE 3, RESISTANCE TO P. SYRINGAE PV MACULICOLA 1, NB-ARC domain-containing disease resistance protein (.1) Potri.005G035400 [exp] 384 / 7e-119 AT3G07040 422 / 6e-133 RESISTANCE TO PSEUDOMONAS SYRINGAE 3, RESISTANCE TO P. SYRINGAE PV MACULICOLA 1, NB-ARC domain-containing disease resistance protein (.1) Potri.001G134450 [exp] 384 / 2e-118 AT3G07040 488 / 1e-157 RESISTANCE TO PSEUDOMONAS SYRINGAE 3, RESISTANCE TO P. SYRINGAE PV MACULICOLA 1, NB-ARC domain-containing disease resistance protein (.1)
Flax homologues Show only best Show top 10	Locus ID BLAST score/e-value At best hit BLAST score/e-value TAIR10 short description Lus10014922 [exp] 371 / 5e-114 AT3G07040 523 / 1e-171 RESISTANCE TO PSEUDOMONAS SYRINGAE 3, RESISTANCE TO P. SYRINGAE PV MACULICOLA 1, NB-ARC domain-containing disease resistance protein (.1) Lus10002945 [exp] 317 / 2e-93 AT3G07040 580 / 0.0 RESISTANCE TO PSEUDOMONAS SYRINGAE 3, RESISTANCE TO P. SYRINGAE PV MACULICOLA 1, NB-ARC domain-containing disease resistance protein (.1) Lus10018937 [exp] 316 / 3e-93 AT3G07040 587 / 0.0 RESISTANCE TO PSEUDOMONAS SYRINGAE 3, RESISTANCE TO P. SYRINGAE PV MACULICOLA 1, NB-ARC domain-containing disease resistance protein (.1) Lus10028639 [exp] 308 / 3e-90 AT3G07040 579 / 0.0 RESISTANCE TO PSEUDOMONAS SYRINGAE 3, RESISTANCE TO P. SYRINGAE PV MACULICOLA 1, NB-ARC domain-containing disease resistance protein (.1) Lus10038983 [exp] 307 / 9e-90 AT3G07040 468 / 5e-150 RESISTANCE TO PSEUDOMONAS SYRINGAE 3, RESISTANCE TO P. SYRINGAE PV MACULICOLA 1, NB-ARC domain-containing disease resistance protein (.1) Lus10020016 [exp] 304 / 5e-89 AT3G07040 563 / 0.0 RESISTANCE TO PSEUDOMONAS SYRINGAE 3, RESISTANCE TO P. SYRINGAE PV MACULICOLA 1, NB-ARC domain-containing disease resistance protein (.1) Lus10027281 [exp] 293 / 3e-85 AT3G07040 459 / 5e-147 RESISTANCE TO PSEUDOMONAS SYRINGAE 3, RESISTANCE TO P. SYRINGAE PV MACULICOLA 1, NB-ARC domain-containing disease resistance protein (.1) Lus10041243 [exp] 288 / 2e-83 AT3G07040 526 / 1e-172 RESISTANCE TO PSEUDOMONAS SYRINGAE 3, RESISTANCE TO P. SYRINGAE PV MACULICOLA 1, NB-ARC domain-containing disease resistance protein (.1) Lus10014712 [exp] 230 / 9e-63 AT3G07040 492 / 3e-159 RESISTANCE TO PSEUDOMONAS SYRINGAE 3, RESISTANCE TO P. SYRINGAE PV MACULICOLA 1, NB-ARC domain-containing disease resistance protein (.1) Lus10039540 [exp] 219 / 7e-59 AT3G14470 727 / 0.0 NB-ARC domain-containing disease resistance protein (.1)
PFAM info	Clan ID Clan name Pfam ID Pfam name Pfam description CL0023 [poplar] [flax] P-loop_NTPase PF00931 [poplar] [flax] NB-ARC NB-ARC domain
Representative CDS sequence Show only first row Show all	>Potri.003G150200.1 pacid=42785086 polypeptide=Potri.003G150200.1.p locus=Potri.003G150200 ID=Potri.003G150200.1.v4.1 annot-version=v4.1 ATGTGGCCCTCCAAAATTCCAAAAAAGAAGAAGAAGAAGAAGAAGGTAAAGGTTGAAGGAGGAAGAAGCAGAGCATATATGGCCGAAGCAGCGGTTTCCT TTGTTATACAAAGGCTCGCTGATTCGCTTGACAAACTTGAATTTCATACCGATGTGCGTAGAGAAGTAGAGCGGTTACAAGATGAACTCAGGAGGATGCG TTGCTTCTTAAGAGATGCTGATGCAAAGCAAGATGTGGACGAGAGAGTGTGTAATTGGGTGTCTGATATCAGAAATGTTGCTTATGATGCTGAAGATCTC ATTGACACGTTTACCCTGAAGATTAGTCCTCTGAAGAAGAAGCATTTTATCAGAAAATACACTTCCCTTGTTAAGGAGTGGAAACAAAGATCCAAGATTG CCGAGGGTCTTGCTGCCCTCCGTTCCAGACTCCAAGATATCTCTGCCAGCCGTGATACTTACGGTATCCAAAACATTGGAGAGGGGACTACTACTGCAAG TGAGACAATGAGGAAGCTGAGAAGATCATCTCCTCGCAGCGAGGAAAGGGATATTATTGGCTTGGAGAATGATACGGCTAAACTGGTGGAGCAACTCATT CAAATGGGGGATCGTTGGAGTGCTGTTTCTATAGTTGGAATGGGCGGTATTGGTAAAACCACTCTTGGTATTAAGATATATAATCACGGTGCCATTAGGG CTCGCTTTCCTTCCCGTGCTTGGATTTATGTATCGCAGGAGTTTAGTGCAAGAGATATTCTGCAGCGAGTCATAAGACAAATTGCATCGCCTAGAGAAAG GCTTGAAGCTTTGACAGATGAAGAGTTGGAGGACTTGGTGTATGAAAATTTACGGAGGAAACGCTATCTGGTGGTTTTGGATGATATCTGGAGCACCAAG GCCTGGGATTGCCTTAAAAAGGCCTTTCCCGCGGATAGAAGTAACGGTAGCAGATTGTTGCTTACAACTAGGAACAAGAATGCTGCTCTGCATGTAGATC CTCAAACTACTCCCTATGATTTGGAATTCCTAAGTAAACAGAACAGTTGGGAGTTGTTCTGCAAGAAAGCATTTATTGATGGCAGTGACACAACTTGCTC GCCCTTATTAGAGGAAATTGGGAAAGAGATTGTGGAGAGATGTGCTGGTTTACCACTGGCCATTATTGTAATTGGAGGCTTGCTATCAAGAAAAAGGAGG CCTAGCGAATGGGAAAGAATTCTTAACAACTTGGATGCACATTTTGCTCGAGACCCAAATGGCGTTTCCGCGATACTTGCTTTGAGCTACAATGACTTGC CATTTTACTTGAAATCTTGCTTCTTTTATTTAGGCCATTTCCCAGAAGATTATTCTATTCATGCCCACAAATTATTTCGGCTATGGATTGCAGAGGGTTT GATTCCACATCAAGGAGAAAGAATGGAGGATGTTGCAGAGGATTACTTGAACGAGCTGATACAGCGAAACATGGTTCAAGCAGAAAGAATGAGTGTCAAC GGGAGGGTCAAGCAATGCCGTTTGCATGATCTGCTACGAGACCTCTCCACCTCGAAGGCAAAGGCACAGAATTTTCTTCAGATTCCGGGTGATGAAAATT TCACATCTTTGGCTAGATGTCGTCGCCATCCAATATATTCTGATTCTCATTTGTCTAGCTTGGGATTTTTCAGTCCACACCTCCGTTCCCTCCTCTTCTT TAGAGTTGTCACTAGAGTTCGTTATCGATATTTCATTGGTAGACATGTCTACGGTTTTTATGAATTATCAAATGCCAATTTTGACTACATTAGCAGGAAT TTCAGACTGTTAAGAATCCTAGAGTTAGAGGGTATATCATGTGGCAGAATTCCAAGCACAATTGGTGATCTGATACATTTGAGTTACTTGGGATTGAAGG AGACTAACATACAAGTGCTTCCATCAACATTAGGTTCTCTGTGTAACCTGCAAACTCTTGATATTGCAAGAAATCTTCACCTTAGGATAGTTCCTAATGT CATTTGGAACATGAGAAATTTGCGACACCTTTACATGTGTGGGCAATCTGGCGGGTTCCTGAGAATCGACAACCTTAAGCATTTGCAGACTCTGTCAGGG ATTGATGTCAGCAGATGGAAACAGAACAACTCTGCACATCTAACTAGTCTTCGAAAATTGAAGATGAGAGGAAACTTGAGCTTAGACACAATTGCAATTT TTGATTCCATTTCAGCCCTTTTGCAACTTCGATCCCTCTACCTGCGAGCTGAAGGTGCTGAGTTTCCTACACTTAGTCAACTTGGCTCTCTTCACTCTCT TGTCAAGTTGCATTTGAAAGGAGGGATAACACGGTTGCCCAGTCTGCAAGAGTTTCCACCGAATCTCTCCCAGTTAACATTAGAATACACCCATCTTGAG CAAGTATCCATAGAGGTTCTAGAGAAGCTTCCAAAGTTATCGATTTTTAGATTAAAAGCGAAGTCTTACAGCAAAGAAGAACTGGGAATCTCTGCCAATG GGTTTCCTCAGTTAGAGTTCCTAGAGTTCAACAGCTTGGAATCCCTAACAGAATTGAAAATAGAAGCAAGTGCATTGCCAAGGCTTGAAATATTTCAAAT TGTCAATTGCAAGGAGCTAAGAATGCTCCCTGAAGAGATGAAACTCATGACTAGTCTCCATGAATTGGTTGTTCAAGATATGCCAAGATTCTTTGTACGT AGACTTCAAGGCGTAGATCTTCAGAAAGTCCAGCATATTCCTTTGATTAGATATATGTGA
AA sequence Show only first row Show all	>Potri.003G150200.1 pacid=42785086 polypeptide=Potri.003G150200.1.p locus=Potri.003G150200 ID=Potri.003G150200.1.v4.1 annot-version=v4.1 MWPSKIPKKKKKKKKVKVEGGRSRAYMAEAAVSFVIQRLADSLDKLEFHTDVRREVERLQDELRRMRCFLRDADAKQDVDERVCNWVSDIRNVAYDAEDL IDTFTLKISPLKKKHFIRKYTSLVKEWKQRSKIAEGLAALRSRLQDISASRDTYGIQNIGEGTTTASETMRKLRRSSPRSEERDIIGLENDTAKLVEQLI QMGDRWSAVSIVGMGGIGKTTLGIKIYNHGAIRARFPSRAWIYVSQEFSARDILQRVIRQIASPRERLEALTDEELEDLVYENLRRKRYLVVLDDIWSTK AWDCLKKAFPADRSNGSRLLLTTRNKNAALHVDPQTTPYDLEFLSKQNSWELFCKKAFIDGSDTTCSPLLEEIGKEIVERCAGLPLAIIVIGGLLSRKRR PSEWERILNNLDAHFARDPNGVSAILALSYNDLPFYLKSCFFYLGHFPEDYSIHAHKLFRLWIAEGLIPHQGERMEDVAEDYLNELIQRNMVQAERMSVN GRVKQCRLHDLLRDLSTSKAKAQNFLQIPGDENFTSLARCRRHPIYSDSHLSSLGFFSPHLRSLLFFRVVTRVRYRYFIGRHVYGFYELSNANFDYISRN FRLLRILELEGISCGRIPSTIGDLIHLSYLGLKETNIQVLPSTLGSLCNLQTLDIARNLHLRIVPNVIWNMRNLRHLYMCGQSGGFLRIDNLKHLQTLSG IDVSRWKQNNSAHLTSLRKLKMRGNLSLDTIAIFDSISALLQLRSLYLRAEGAEFPTLSQLGSLHSLVKLHLKGGITRLPSLQEFPPNLSQLTLEYTHLE QVSIEVLEKLPKLSIFRLKAKSYSKEELGISANGFPQLEFLEFNSLESLTELKIEASALPRLEIFQIVNCKELRMLPEEMKLMTSLHELVVQDMPRFFVR RLQGVDLQKVQHIPLIRYM

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DESeq2's median of ratios [POPLAR]

Mapped by: StringTie Salmon Order by: Tissue Experiment Show only core collection Show again Show schematic diagram

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Coexpressed genes

Compare expression of checked genes Schematic diagram [FLAX] Schematic diagram [POPLAR]

*If you select 4 or less genes and then press "compare expression", expression will be shown as a graph. If you select more than 4 genes, expresion will be shown as a heat map.
*Color represents relative expression level among samples for each gene.

At best	At TF class	At alias	At description		Locus	MR	r	Symbol	NWA:WT	NWB:WT	NWA:OE-ARK2	NWB:OE-ARK2	NWA:miRNA-ARK2	NWB:miRNA-ARK2	NW 0hr	WT H20	WT-NW	TUA1dEY NW	TUA1dEY+TUB15 NW	TUA1dY+TUB9 NW	Pde NW	NWA:WT GA	NWBWT GA	TW:WT	TW:WT GA	NWA:OE-ARK2 GA	NWB:OE-ARK2 GA	TW:OE-ARK2	TW:OE-ARK2 GA	NWA:miRNA-ARK2 GA	NWB:miRNA-ARK2 GA	TW:miRNA-ARK2	TW:miRNA-ARK2 GA	TW 2hr	TW 8hr	TW 24hr	TW 48hr	TW 96hr	TW 336hr	WT ACC	35S::etr1-1 H20	35S::etr1-1 ACC	LMX5::etr1-1 H20	LMX5::etr1-1 ACC	WT-TW	TUA1dEY TW	TUA1dEY+TUB15 TW	TUA1dY+TUB9 TW	Pde TW	OW:WT	OW:WT GA	OW:OE-ARK2	OW:OE-ARK2 GA	OW:miRNA-ARK2	OW:miRNA-ARK2 GA	OW 2hr	OW 8hr	OW 24hr	OW 48hr	OW 96hr	OW 336hr	Root CTR	Root LongCold	Root LongDrougt	Root LongHeat	Root LongSalt	Root ShortCold	Root ShortDrougt	Root ShortHeat	Root ShortSalt	Ptr root	Leaf CTR	Leaf LongCold	Leaf LongDrougt	Leaf LongHeat	Leaf LongSalt	Leaf ShortCold	Leaf ShortDrougt	Leaf ShortHeat	Leaf ShortSalt	Ptr leaf	Stem CTR	Stem LongCold	Stem LongDrougt	Stem LongHeat	Stem LongSalt	Stem ShortCold	Stem ShortDrougt	Stem ShortHeat	Stem ShortSalt	Ptr shoot	Ptr xylem	Ptr phloem	Ptr fiber	Ptr vessel	Ptr fiber vessel ray
AT5G43470		HRT, RCY1, RPP8	RECOGNITION OF PERONOSPORA PAR...		Potri.003G150200 [exp]	0	1
AT2G06040			unknown protein		Potri.006G142200 [exp]	9.59	0.7001
AT5G46550			DNA-binding bromodomain-contai...		Potri.011G077100 [exp]	25.92	0.6701
AT4G29000	CPP		Tesmin/TSO1-like CXC domain-co...		Potri.006G160400 [exp]	42.66	0.6640
AT4G21670		FRY2, FLP1, ATC...	FIERY 2, C-terminal domain pho...		Potri.004G040000 [exp]	58.86	0.6638
AT1G68800	TCP	TCP12, BRC2, TC...	BRANCHED 2, TCP domain protein...		Potri.015G050500 [exp]	90.43	0.6251
AT1G60690			NAD(P)-linked oxidoreductase s...		Potri.002G234000 [exp]	100.03	0.6387
AT5G61330			rRNA processing protein-relate...		Potri.019G085100 [exp]	119.14	0.5853
AT3G07610		IBM1	increase in bonsai methylation...		Potri.005G091200 [exp]	145.94	0.6186
AT3G07930			DNA glycosylase superfamily pr...		Potri.014G187766 [exp]	155.30	0.5997
AT4G05200		CRK25	cysteine-rich RLK (RECEPTOR-li...		Potri.004G026200 [exp]	155.45	0.6123

Compare expression of checked genes

Potri.003G150200 coexpression network

*The number of genes in the network is adjusted within 50 genes.
*Gene name represents symbol(s) of closest Arabidopsis gene if symbol(s) for the gene itself doesn't exist.
*Circle diameter represents the number of connection with other genes within this network.
*Color for gene name represents subnetwork based on the result of network clustering.