Plant FIBer expression Database

External link	JGI Phytozome v13 [genome browser] Popgenie AspWood
Symbol
Arabidopsis homologues Show only best Show top 10	Locus ID BLAST score/e-value TF class Alias TAIR10 short description AT5G07580 165 / 4e-50 AP2_ERF Integrase-type DNA-binding superfamily protein (.1) AT5G61590 132 / 1e-38 AP2_ERF Integrase-type DNA-binding superfamily protein (.1) AT5G51190 122 / 4e-34 AP2_ERF Integrase-type DNA-binding superfamily protein (.1) AT5G61600 121 / 1e-33 AP2_ERF ERF104 ethylene response factor 104 (.1) AT5G47230 119 / 3e-32 AP2_ERF ATERF5, ATERF-5, ERF5 ETHYLENE RESPONSIVE ELEMENT BINDING FACTOR- 5, ethylene responsive element binding factor 5 (.1) AT4G17490 118 / 3e-32 AP2_ERF ERF-6-6, ATERF6 ethylene responsive element binding factor 6 (.1) AT5G47220 115 / 3e-31 AP2_ERF ATERF-2, ERF2, ATERF2 ETHYLENE RESPONSE FACTOR- 2, ethylene responsive element binding factor 2 (.1) AT4G17500 105 / 3e-27 AP2_ERF ATERF-1, AtERF1 ethylene responsive element binding factor 1 (.1) AT2G44840 103 / 4e-27 AP2_ERF ATERF13, EREBP ethylene-responsive element binding factor 13 (.1) AT3G23240 103 / 5e-27 AP2_ERF ERF1, ATERF1 ethylene response factor 1 (.1)
Paralogs Show only best Show top 10	Gene ID BLAST score/e-value At best hit BLAST score/e-value TAIR10 short description Potri.001G079600 [exp] 347 / 2e-122 AT5G07580 145 / 1e-42 Integrase-type DNA-binding superfamily protein (.1) Potri.003G150800 [exp] 153 / 2e-45 AT5G51190 185 / 7e-58 Integrase-type DNA-binding superfamily protein (.1) Potri.001G079800 [exp] 149 / 9e-44 AT5G51190 186 / 2e-58 Integrase-type DNA-binding superfamily protein (.1) Potri.003G080600 [exp] 128 / 3e-35 AT4G17490 159 / 3e-46 ethylene responsive element binding factor 6 (.1) Potri.001G154200 [exp] 115 / 2e-30 AT4G17490 159 / 2e-46 ethylene responsive element binding factor 6 (.1) Potri.004G051700 [exp] 106 / 2e-28 AT5G47220 111 / 1e-30 ETHYLENE RESPONSE FACTOR- 2, ethylene responsive element binding factor 2 (.1) Potri.002G039300 [exp] 105 / 2e-28 AT3G23220 82 / 2e-20 ethylene and salt inducible 1, Integrase-type DNA-binding superfamily protein (.1) Potri.010G072400 [exp] 105 / 2e-28 AT3G23230 85 / 1e-21 Integrase-type DNA-binding superfamily protein (.1) Potri.003G081200 [exp] 108 / 3e-28 AT4G17500 211 / 1e-67 ethylene responsive element binding factor 1 (.1)
Flax homologues Show only best Show top 10	Locus ID BLAST score/e-value At best hit BLAST score/e-value TAIR10 short description Lus10032498 [exp] 150 / 3e-45 AT5G07580 144 / 1e-42 Integrase-type DNA-binding superfamily protein (.1) Lus10042995 [exp] 140 / 3e-41 AT5G07580 129 / 1e-36 Integrase-type DNA-binding superfamily protein (.1) Lus10032499 [exp] 130 / 8e-37 AT5G51190 186 / 8e-59 Integrase-type DNA-binding superfamily protein (.1) Lus10042996 [exp] 127 / 1e-35 AT5G51190 189 / 6e-60 Integrase-type DNA-binding superfamily protein (.1) Lus10013959 [exp] 104 / 2e-28 AT3G23240 124 / 2e-36 ethylene response factor 1 (.1) Lus10029333 [exp] 104 / 2e-27 AT2G44840 147 / 1e-44 ethylene-responsive element binding factor 13 (.1) Lus10025430 [exp] 102 / 3e-27 AT3G23240 132 / 6e-39 ethylene response factor 1 (.1) Lus10024883 [exp] 102 / 4e-27 AT3G23230 130 / 3e-39 Integrase-type DNA-binding superfamily protein (.1) Lus10022936 [exp] 101 / 4e-27 AT3G23230 114 / 9e-34 Integrase-type DNA-binding superfamily protein (.1) Lus10011830 [exp] 101 / 6e-27 AT3G23230 134 / 4e-41 Integrase-type DNA-binding superfamily protein (.1)
PFAM info	Clan ID Clan name Pfam ID Pfam name Pfam description CL0081 [poplar] [flax] MBD-like PF00847 [poplar] [flax] AP2 AP2 domain
Representative CDS sequence Show only first row Show all	>Potri.003G151000.1 pacid=42786574 polypeptide=Potri.003G151000.1.p locus=Potri.003G151000 ID=Potri.003G151000.1.v4.1 annot-version=v4.1 ATGGCAACCCCGGAAGAATCCTCAACATTAGAACTCATAAGACAACATCTTCTTGGAGACTTCATCTCCACAGACGAGTTTATCAGTAATCTTGAGTCCA GTATAGCCAGTGTCTCTGTCAAACTAGAGAGCTCCCTTTCTGGGTCAGAACCCAACTCCCCAATATCCGACCAAAGTTACCATAGTACCCCAGAAACCTA TAGCTTTGAAATAAAACCTGAAATCATAGACTTCACACCTCCTGAGCCCGTGTTTTCAGGTTCAAGTAATCAGTACCCACCACCTGAGCCTGTAAAGATG ACAGATAAAGGAGAAACAGTAAGGCATTACAGGGGGGTCCGAAGAAGGCCATGGGGCAAGTTTGCAGCAGAGATCCGTGACCCTACCCGGAAGGGAAGTC GGGTTTGGTTGGGTACTTTTGACAGTGATACTGATGCTGCAAAAGCTTATGACTGTGCTGCATTCAAAATGAGGGGCAGGAAAGCAATCCTGAATTTTCC TTCGGAGGCTGGACTATCCATCCCGCCGCCAGCCACAGGCAGGAAGAGAAGAAGATCGAAGGGAGAAGAGGTGCTGCCGGAATCTGTTGATGTGTCAACG GAAAATTGGAATTTAAAGTGGAGTGGAGAAGTAGAGGAGGGTGTTTCAGATGAGGAGCAACTGTCACCGTTAACCCAAGAAACCATGTTGGCAAGGCTTT CTTAA
AA sequence Show only first row Show all	>Potri.003G151000.1 pacid=42786574 polypeptide=Potri.003G151000.1.p locus=Potri.003G151000 ID=Potri.003G151000.1.v4.1 annot-version=v4.1 MATPEESSTLELIRQHLLGDFISTDEFISNLESSIASVSVKLESSLSGSEPNSPISDQSYHSTPETYSFEIKPEIIDFTPPEPVFSGSSNQYPPPEPVKM TDKGETVRHYRGVRRRPWGKFAAEIRDPTRKGSRVWLGTFDSDTDAAKAYDCAAFKMRGRKAILNFPSEAGLSIPPPATGRKRRRSKGEEVLPESVDVST ENWNLKWSGEVEEGVSDEEQLSPLTQETMLARLS

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DESeq2's median of ratios [POPLAR]

Mapped by: StringTie Salmon Order by: Tissue Experiment Show only core collection Show again Show schematic diagram

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Coexpressed genes

Compare expression of checked genes Schematic diagram [FLAX] Schematic diagram [POPLAR]

*If you select 4 or less genes and then press "compare expression", expression will be shown as a graph. If you select more than 4 genes, expresion will be shown as a heat map.
*Color represents relative expression level among samples for each gene.

At best	At TF class	At alias	At description		Locus	MR	r	Symbol	NWA:WT	NWB:WT	NWA:OE-ARK2	NWB:OE-ARK2	NWA:miRNA-ARK2	NWB:miRNA-ARK2	NW 0hr	WT H20	WT-NW	TUA1dEY NW	TUA1dEY+TUB15 NW	TUA1dY+TUB9 NW	Pde NW	NWA:WT GA	NWBWT GA	TW:WT	TW:WT GA	NWA:OE-ARK2 GA	NWB:OE-ARK2 GA	TW:OE-ARK2	TW:OE-ARK2 GA	NWA:miRNA-ARK2 GA	NWB:miRNA-ARK2 GA	TW:miRNA-ARK2	TW:miRNA-ARK2 GA	TW 2hr	TW 8hr	TW 24hr	TW 48hr	TW 96hr	TW 336hr	WT ACC	35S::etr1-1 H20	35S::etr1-1 ACC	LMX5::etr1-1 H20	LMX5::etr1-1 ACC	WT-TW	TUA1dEY TW	TUA1dEY+TUB15 TW	TUA1dY+TUB9 TW	Pde TW	OW:WT	OW:WT GA	OW:OE-ARK2	OW:OE-ARK2 GA	OW:miRNA-ARK2	OW:miRNA-ARK2 GA	OW 2hr	OW 8hr	OW 24hr	OW 48hr	OW 96hr	OW 336hr	Root CTR	Root LongCold	Root LongDrougt	Root LongHeat	Root LongSalt	Root ShortCold	Root ShortDrougt	Root ShortHeat	Root ShortSalt	Ptr root	Leaf CTR	Leaf LongCold	Leaf LongDrougt	Leaf LongHeat	Leaf LongSalt	Leaf ShortCold	Leaf ShortDrougt	Leaf ShortHeat	Leaf ShortSalt	Ptr leaf	Stem CTR	Stem LongCold	Stem LongDrougt	Stem LongHeat	Stem LongSalt	Stem ShortCold	Stem ShortDrougt	Stem ShortHeat	Stem ShortSalt	Ptr shoot	Ptr xylem	Ptr phloem	Ptr fiber	Ptr vessel	Ptr fiber vessel ray
AT5G07580	AP2_ERF		Integrase-type DNA-binding sup...		Potri.003G151000 [exp]	0	1
AT1G15460		ATBOR4	ARABIDOPSIS THALIANA REQUIRES ...		Potri.003G059700 [exp]	2.00	0.9568
					Potri.013G045410 [exp]	3.16	0.9254
					Potri.017G111225 [exp]	5.65	0.9417
AT1G31350		KUF1	KAR-UP F-box 1 (.1)		Potri.001G230600 [exp]	7.74	0.9346
AT2G02450	NAC	LOV1, ANAC034, ...	LONG VEGETATIVE PHASE 1, Arabi...		Potri.003G046700 [exp]	11.40	0.9349
AT4G32260		PDE334	PIGMENT DEFECTIVE 334, ATPase,...		Potri.006G255600 [exp]	12.48	0.9416
AT5G20230		SAG14, ATBCB	SENESCENCE ASSOCIATED GENE 14,...		Potri.001G192100 [exp]	14.42	0.8973
AT5G06720		ATPA2	peroxidase 2 (.1)		Potri.001G011500 [exp]	15.19	0.9247	PRX1.12
AT5G07580	AP2_ERF		Integrase-type DNA-binding sup...		Potri.001G079600 [exp]	18.33	0.9341
AT1G70880			Polyketide cyclase/dehydrase a...		Potri.004G020100 [exp]	19.07	0.8801

Compare expression of checked genes

Potri.003G151000 coexpression network

*The number of genes in the network is adjusted within 50 genes.
*Gene name represents symbol(s) of closest Arabidopsis gene if symbol(s) for the gene itself doesn't exist.
*Circle diameter represents the number of connection with other genes within this network.
*Color for gene name represents subnetwork based on the result of network clustering.