Plant FIBer expression Database

External link	JGI Phytozome v13 [genome browser] Popgenie AspWood
Symbol	CAT5.1
Arabidopsis homologues Show only best Show top 10	Locus ID BLAST score/e-value TF class Alias TAIR10 short description AT2G34960 870 / 0 CAT5 cationic amino acid transporter 5 (.1) AT1G17120 718 / 0 CAT8 cationic amino acid transporter 8 (.1) AT4G21120 685 / 0 CAT1, AAT1 CATIONIC AMINO ACID TRANSPORTER 1, amino acid transporter 1 (.1) AT5G04770 403 / 7e-134 CAT6, ATCAT6 ARABIDOPSIS THALIANA CATIONIC AMINO ACID TRANSPORTER 6, cationic amino acid transporter 6 (.1) AT3G10600 401 / 3e-133 CAT7 cationic amino acid transporter 7 (.1) AT5G36940 219 / 2e-63 CAT3 cationic amino acid transporter 3 (.1) AT3G03720 216 / 3e-62 CAT4 cationic amino acid transporter 4 (.1.2) AT1G58030 210 / 1e-59 CAT2 cationic amino acid transporter 2 (.1) AT1G05940 201 / 6e-57 CAT9 cationic amino acid transporter 9 (.1)
Paralogs Show only best Show top 10	Gene ID BLAST score/e-value At best hit BLAST score/e-value TAIR10 short description Potri.001G378500 [exp] 719 / 0 AT1G17120 785 / 0.0 cationic amino acid transporter 8 (.1) Potri.015G133100 [exp] 669 / 0 AT4G21120 845 / 0.0 CATIONIC AMINO ACID TRANSPORTER 1, amino acid transporter 1 (.1) Potri.012G131300 [exp] 659 / 0 AT4G21120 848 / 0.0 CATIONIC AMINO ACID TRANSPORTER 1, amino acid transporter 1 (.1) Potri.013G030900 [exp] 655 / 0 AT4G21120 833 / 0.0 CATIONIC AMINO ACID TRANSPORTER 1, amino acid transporter 1 (.1) Potri.013G030833 [exp] 655 / 0 AT4G21120 833 / 0.0 CATIONIC AMINO ACID TRANSPORTER 1, amino acid transporter 1 (.1) Potri.001G150700 [exp] 401 / 3e-133 AT5G04770 519 / 2e-179 ARABIDOPSIS THALIANA CATIONIC AMINO ACID TRANSPORTER 6, cationic amino acid transporter 6 (.1) Potri.008G017100 [exp] 395 / 4e-131 AT3G10600 778 / 0.0 cationic amino acid transporter 7 (.1) Potri.003G083700 [exp] 393 / 5e-130 AT5G04770 509 / 7e-176 ARABIDOPSIS THALIANA CATIONIC AMINO ACID TRANSPORTER 6, cationic amino acid transporter 6 (.1) Potri.010G241000 [exp] 392 / 9e-130 AT3G10600 781 / 0.0 cationic amino acid transporter 7 (.1)
Flax homologues Show only best Show top 10	Locus ID BLAST score/e-value At best hit BLAST score/e-value TAIR10 short description Lus10005574 [exp] 693 / 0 AT1G17120 811 / 0.0 cationic amino acid transporter 8 (.1) Lus10001581 [exp] 673 / 0 AT4G21120 915 / 0.0 CATIONIC AMINO ACID TRANSPORTER 1, amino acid transporter 1 (.1) Lus10023271 [exp] 648 / 0 AT4G21120 902 / 0.0 CATIONIC AMINO ACID TRANSPORTER 1, amino acid transporter 1 (.1) Lus10042817 [exp] 597 / 0 AT4G21120 731 / 0.0 CATIONIC AMINO ACID TRANSPORTER 1, amino acid transporter 1 (.1) Lus10000962 [exp] 380 / 6e-125 AT5G04770 543 / 0.0 ARABIDOPSIS THALIANA CATIONIC AMINO ACID TRANSPORTER 6, cationic amino acid transporter 6 (.1) Lus10040142 [exp] 380 / 7e-125 AT5G04770 547 / 0.0 ARABIDOPSIS THALIANA CATIONIC AMINO ACID TRANSPORTER 6, cationic amino acid transporter 6 (.1) Lus10028195 [exp] 223 / 3e-65 AT1G05940 763 / 0.0 cationic amino acid transporter 9 (.1) Lus10042898 [exp] 209 / 4e-60 AT1G05940 763 / 0.0 cationic amino acid transporter 9 (.1) Lus10005671 [exp] 211 / 6e-60 AT1G58030 958 / 0.0 cationic amino acid transporter 2 (.1) Lus10018691 [exp] 194 / 1e-59 AT2G34960 181 / 1e-55 cationic amino acid transporter 5 (.1)
PFAM info	Clan ID Clan name Pfam ID Pfam name Pfam description CL0062 [poplar] [flax] APC PF00324 [poplar] [flax] AA_permease Amino acid permease CL0062 [poplar] [flax] APC PF13906 [poplar] [flax] AA_permease_C C-terminus of AA_permease
Representative CDS sequence Show only first row Show all	>Potri.003G154600.1 pacid=42785482 polypeptide=Potri.003G154600.1.p locus=Potri.003G154600 ID=Potri.003G154600.1.v4.1 annot-version=v4.1 ATGAGTTCCATTGGAGATATGAGTGATGAGATTCAACACAAAAGTTATTGGAGGTTTAGCAAACAAGATTTCTTACCAGAAGAGTCCTTCCAAAGCTGGG GAAACTACCGTTCCGCATTGTCGGAGACATGTTTCCGGTTCAAGGACCGTCTCATCAGCCGGTCAGATGATGTCAATGAGATTGGGGAGCTTCGGAAACA AAGTGAGAACGAGATGAAACGTTGCCTCACTTGGTGGGACCTTACCTGGTTTGGATTTGGTTCGGTCGTTGGAGCAGGCATCTTTGTGCTCACTGGTCAA GAAGCCCATGAACATGCTGGACCTGCCATTGTGTTGTCCTATGTTGCTTCTGGAGTGTCAGCAATGCTCTCTGTATTCTGTTACACGGAATTCGCAGTCG AAGTCCCTGTAGCGGGTGGGTCATTTGCTTACTTGAGAATTGAATTAGGAGACTTTGTGGCCTTCATAACTGCAGGGAACATACTGCTTGAAAGCATCGC GGGCAGTGCAGCAGTTGCCAGGGCATGGACTTCTTACTTCACAAATCTTCTTAATCGTCCTTCAAACTCTTTACGGATCCATACAAATCTAGCTGAAGGT TTCAATCTCCTGGATCCAATAGCTGTTGGAGTTTTGGTGATTGCAGCAACAATTGCAATTATCAGCACAAGGAAAACTTCACTGATCAATTGGATAGCCA CAGCACTGAATACTGCTGTAATTTTGTTTGTGATAATTGCAGGGTTTGCTCATGCCAATACATCCAATCTGAAACCATTTTTGCCTTTTGGGGCAAAAGG GATCTTCCAAGCAGCTGCAATTGTCTACTTTGCTTACGGAGGCTTTGACAATATAGCCACCATGGCGGAAGAAACAAAAAACCCATCCAGAGACATACCG ATAGGATTGCTTGGATCAATGTCAATCATTACCGTGATATACTGCTTAATGGCACTTACCCTATCTATGATGCAAAAATACACAGAGATTGACAAAGGTG CGGCTTACTCTGTTGCATTTCAGAGTGTGGGAATGAATTGGGCAAGGTACCTGGTAGCACTTGGTGCTCTCAAGGGGATGACCACCGTTCTTTTGGTAGG GGCGCTTGGACAAGCACGATATACTACTCATATTGCACGAGCCCACATGATCCCTCCATGGTTTGCTCTTGTCCATCCAAAGACTGGAACACCAATAAAT GCAACACTTCTTATCACCATTTCAAGCGCTCTCATTGCTTTTTTCTCAAGCCTGGATGTCTTGGCAAGTTTGTTGTCAGTAAGCACCCTATTTATCTTCA TGATGATGGCTGTTGCATTACTTGTGAGGAGATACCATGTCAGAGATATCACACCACAAACAAACCTCTTGAAGCTAGCCCTCTTCCTGCTAATCATTAT TTCTTCGTCCATGGGGACTTCAGCTTACTGGGGACTGAATCCCAATGGTTGGGTTGGATATGCTATAACCATTCCTTTTTGGTTCTTGGGGACTATTGGA TTATCGATGTTACCTCAACAGAGAGAGCCAAAGGTTTGGGGCGTTCCACTGGTTCCATGGCTTCCATCCTTGTCAATTGCAATAAACATCTTTCTAATGG GATCTTTGGGTGCTGAGGCTTTTGAAAGATTTGGTATTTGCACAGTGGTGATGCTCATTTACTATGTCTTCTTTGGTCTCCATGCAACCTATGACATGGC TCATCTGCATCGCAAGGCACAATCAACGGAAGTTAATAATGAAGATATGATTGGAAGAAAAGGACCTTAA
AA sequence Show only first row Show all	>Potri.003G154600.1 pacid=42785482 polypeptide=Potri.003G154600.1.p locus=Potri.003G154600 ID=Potri.003G154600.1.v4.1 annot-version=v4.1 MSSIGDMSDEIQHKSYWRFSKQDFLPEESFQSWGNYRSALSETCFRFKDRLISRSDDVNEIGELRKQSENEMKRCLTWWDLTWFGFGSVVGAGIFVLTGQ EAHEHAGPAIVLSYVASGVSAMLSVFCYTEFAVEVPVAGGSFAYLRIELGDFVAFITAGNILLESIAGSAAVARAWTSYFTNLLNRPSNSLRIHTNLAEG FNLLDPIAVGVLVIAATIAIISTRKTSLINWIATALNTAVILFVIIAGFAHANTSNLKPFLPFGAKGIFQAAAIVYFAYGGFDNIATMAEETKNPSRDIP IGLLGSMSIITVIYCLMALTLSMMQKYTEIDKGAAYSVAFQSVGMNWARYLVALGALKGMTTVLLVGALGQARYTTHIARAHMIPPWFALVHPKTGTPIN ATLLITISSALIAFFSSLDVLASLLSVSTLFIFMMMAVALLVRRYHVRDITPQTNLLKLALFLLIIISSSMGTSAYWGLNPNGWVGYAITIPFWFLGTIG LSMLPQQREPKVWGVPLVPWLPSLSIAINIFLMGSLGAEAFERFGICTVVMLIYYVFFGLHATYDMAHLHRKAQSTEVNNEDMIGRKGP

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DESeq2's median of ratios [POPLAR]

Mapped by: StringTie Salmon Order by: Tissue Experiment Show only core collection Show again Show schematic diagram

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Coexpressed genes

Compare expression of checked genes Schematic diagram [FLAX] Schematic diagram [POPLAR]

*If you select 4 or less genes and then press "compare expression", expression will be shown as a graph. If you select more than 4 genes, expresion will be shown as a heat map.
*Color represents relative expression level among samples for each gene.

At best	At TF class	At alias	At description		Locus	MR	r	Symbol	NWA:WT	NWB:WT	NWA:OE-ARK2	NWB:OE-ARK2	NWA:miRNA-ARK2	NWB:miRNA-ARK2	NW 0hr	WT H20	WT-NW	TUA1dEY NW	TUA1dEY+TUB15 NW	TUA1dY+TUB9 NW	Pde NW	NWA:WT GA	NWBWT GA	TW:WT	TW:WT GA	NWA:OE-ARK2 GA	NWB:OE-ARK2 GA	TW:OE-ARK2	TW:OE-ARK2 GA	NWA:miRNA-ARK2 GA	NWB:miRNA-ARK2 GA	TW:miRNA-ARK2	TW:miRNA-ARK2 GA	TW 2hr	TW 8hr	TW 24hr	TW 48hr	TW 96hr	TW 336hr	WT ACC	35S::etr1-1 H20	35S::etr1-1 ACC	LMX5::etr1-1 H20	LMX5::etr1-1 ACC	WT-TW	TUA1dEY TW	TUA1dEY+TUB15 TW	TUA1dY+TUB9 TW	Pde TW	OW:WT	OW:WT GA	OW:OE-ARK2	OW:OE-ARK2 GA	OW:miRNA-ARK2	OW:miRNA-ARK2 GA	OW 2hr	OW 8hr	OW 24hr	OW 48hr	OW 96hr	OW 336hr	Root CTR	Root LongCold	Root LongDrougt	Root LongHeat	Root LongSalt	Root ShortCold	Root ShortDrougt	Root ShortHeat	Root ShortSalt	Ptr root	Leaf CTR	Leaf LongCold	Leaf LongDrougt	Leaf LongHeat	Leaf LongSalt	Leaf ShortCold	Leaf ShortDrougt	Leaf ShortHeat	Leaf ShortSalt	Ptr leaf	Stem CTR	Stem LongCold	Stem LongDrougt	Stem LongHeat	Stem LongSalt	Stem ShortCold	Stem ShortDrougt	Stem ShortHeat	Stem ShortSalt	Ptr shoot	Ptr xylem	Ptr phloem	Ptr fiber	Ptr vessel	Ptr fiber vessel ray
AT2G34960		CAT5	cationic amino acid transporte...		Potri.003G154600 [exp]	0	1	CAT5.1
AT2G29990		NDA2	alternative NAD(P)H dehydrogen...		Potri.009G047100 [exp]	4.00	0.9223
AT3G06880			Transducin/WD40 repeat-like su...		Potri.015G117300 [exp]	4.24	0.9351
AT4G02050		STP7	sugar transporter protein 7 (....		Potri.018G113300 [exp]	5.29	0.9343
AT5G46050		ATPTR3, PTR3	ARABIDOPSIS THALIANA PEPTIDE T...		Potri.010G068100 [exp]	7.74	0.9199
AT3G24140	bHLH	bHLH097, FMA	FAMA, basic helix-loop-helix (...		Potri.001G314400 [exp]	8.48	0.9231
AT5G64940		ATATH13, ATOSA1	A. THALIANA OXIDATIVE STRESS-R...		Potri.007G082500 [exp]	9.38	0.9248
AT5G38260			Protein kinase superfamily pro...		Potri.010G120950 [exp]	9.74	0.9236
AT5G15070			Phosphoglycerate mutase-like f...		Potri.017G076400 [exp]	10.19	0.8989
AT4G27290			S-locus lectin protein kinase ...		Potri.011G125351 [exp]	10.24	0.9340
AT2G29110		ATGLR2.8	glutamate receptor 2.8 (.1)		Potri.018G011800 [exp]	11.22	0.9146

Compare expression of checked genes

Potri.003G154600 coexpression network

*The number of genes in the network is adjusted within 50 genes.
*Gene name represents symbol(s) of closest Arabidopsis gene if symbol(s) for the gene itself doesn't exist.
*Circle diameter represents the number of connection with other genes within this network.
*Color for gene name represents subnetwork based on the result of network clustering.