Plant FIBer expression Database

External link	JGI Phytozome v13 [genome browser] Popgenie AspWood
Symbol
Arabidopsis homologues Show only best Show top 10	Locus ID BLAST score/e-value TF class Alias TAIR10 short description AT3G12720 240 / 2e-77 MYB ATMYB67, AtY53 myb domain protein 67 (.1) AT1G57560 216 / 5e-68 MYB ATMYB50 myb domain protein 50 (.1) AT5G26660 216 / 2e-67 MYB ATMYB4, ATMYB86 myb domain protein 86 (.1) AT3G13890 214 / 9e-67 MYB ATMYB26, MS35 MALE STERILE 35, myb domain protein 26 (.1.2) AT1G09540 209 / 6e-65 MYB AtMYB61 ARABIDOPSIS THALIANA MYB DOMAIN PROTEIN 61, myb domain protein 61 (.1) AT4G01680 205 / 6e-65 MYB ATMYB55 myb domain protein 55 (.1.2.3) AT1G63910 196 / 1e-59 MYB AtMYB103 myb domain protein 103 (.1) AT3G02940 188 / 3e-57 MYB ATMYB107 myb domain protein 107 (.1) AT3G01140 188 / 2e-56 MYB NOK, ATMYB106 NOECK, myb domain protein 106 (.1) AT3G61250 185 / 3e-56 MYB LMI2, ATMYB17 LATE MERISTEM IDENTITY2, myb domain protein 17 (.1)
Paralogs Show only best Show top 10	Gene ID BLAST score/e-value At best hit BLAST score/e-value TAIR10 short description Potri.001G075400 [exp] 432 / 9e-153 AT3G12720 246 / 6e-80 myb domain protein 67 (.1) Potri.008G081600 [exp] 280 / 7e-93 AT3G12720 262 / 2e-86 myb domain protein 67 (.1) Potri.010G174500 [exp] 256 / 2e-83 AT3G12720 244 / 3e-79 myb domain protein 67 (.1) Potri.001G197000 [exp] 219 / 1e-68 AT3G13890 256 / 1e-82 MALE STERILE 35, myb domain protein 26 (.1.2) Potri.013G001000 [exp] 213 / 1e-65 AT1G09540 382 / 1e-130 ARABIDOPSIS THALIANA MYB DOMAIN PROTEIN 61, myb domain protein 61 (.1) Potri.012G084100 [exp] 211 / 2e-65 AT5G26660 253 / 1e-81 myb domain protein 86 (.1) Potri.005G001600 [exp] 211 / 9e-65 AT1G09540 376 / 1e-128 ARABIDOPSIS THALIANA MYB DOMAIN PROTEIN 61, myb domain protein 61 (.1) Potri.014G111200 [exp] 210 / 4e-64 AT4G01680 282 / 3e-93 myb domain protein 55 (.1.2.3) Potri.015G082700 [exp] 206 / 1e-63 AT1G57560 254 / 2e-82 myb domain protein 50 (.1)
Flax homologues Show only best Show top 10	Locus ID BLAST score/e-value At best hit BLAST score/e-value TAIR10 short description Lus10038395 [exp] 228 / 8e-73 AT3G12720 233 / 2e-75 myb domain protein 67 (.1) Lus10001226 [exp] 224 / 3e-71 AT3G12720 231 / 8e-75 myb domain protein 67 (.1) Lus10015608 [exp] 218 / 4e-68 AT3G13890 249 / 8e-80 MALE STERILE 35, myb domain protein 26 (.1.2) Lus10038022 [exp] 207 / 6e-63 AT4G01680 273 / 8e-90 myb domain protein 55 (.1.2.3) Lus10024669 [exp] 196 / 4e-58 AT1G63910 260 / 2e-82 myb domain protein 103 (.1) Lus10030378 [exp] 186 / 2e-56 AT3G61250 341 / 8e-118 LATE MERISTEM IDENTITY2, myb domain protein 17 (.1) Lus10014784 [exp] 185 / 3e-56 AT3G61250 342 / 1e-118 LATE MERISTEM IDENTITY2, myb domain protein 17 (.1) Lus10032298 [exp] 188 / 3e-55 AT1G63910 260 / 2e-82 myb domain protein 103 (.1) Lus10000411 [exp] 177 / 2e-53 AT4G09460 300 / 5e-103 myb domain protein 6 (.1) Lus10040139 [exp] 175 / 2e-53 AT5G16770 231 / 9e-76 myb domain protein 9 (.1.2)
PFAM info	Clan ID Clan name Pfam ID Pfam name Pfam description CL0123 [poplar] [flax] HTH PF00249 [poplar] [flax] Myb_DNA-binding Myb-like DNA-binding domain
Representative CDS sequence Show only first row Show all	>Potri.003G155700.1 pacid=42785653 polypeptide=Potri.003G155700.1.p locus=Potri.003G155700 ID=Potri.003G155700.1.v4.1 annot-version=v4.1 ATGGTGAGCTGTGATGATATGCAGGAGGGTTTGGGAAATAAGACGGGCCACCAATGCTGCAGCAAACGGAAGGTCAAGAGAGGGTTATGGTCTCCAGATG AAGACGAGAAGCTAATAAAATATATAACCACCCATGGCCATGGTTCTTGGAGTTCTGTTCCAAAGCTAGCAGGGCTGCAAAGGTGTGGAAAGAGTTGTAG ATTGAGATGGATAAACTACTTGAGACCAGATCTCAAAAGAGGTTCGTTTACTGCACAAGAAGAAAGTATCATCGTTGAGATTCACAGAATGCTAGGCAAT AGATGGGCTCAAATAGCTAAGCATTTGCCTGGTAGAACTGACAATGAGGTCAAGAACTTCTGGAACTCGTGCATCAAAAAGAAGCTCATTGCACAAGGGT TAGATCCAAAAACTCATAATCTCCTCTCTAACAATTACAAACATAACAATAACAATAATGCATGCGAACTGATCTCTTATCAATATTCCCATCAACAAAC CACCTCAACTTTCACAGTAGATTCACAAATCAATGATACTTCAATGGATATGAAAGCACCCCTCATTCCATTCCCTACGATTCCCCCAGTTCCTGATACC AATCCATATCCCCCCTTGTTGCACAAATTCTCTTCCATATCAACATGTGAATACCAAAACCCTAATACACTAGCTTTCTTGGAGTCTGGAAGCAAGTCTT CAATCGGAAGTGTCCCTGTATCCTCTTCTACTTCACATCCATCTGAGTTTGGCATGCTAGATGAGACCTGCATGTGGGCTGGTGGCTATGAACTCATTCA ATCCATAAAATCTGAAAAAGAGCAGCCAGAACAGCAAGTGGAATTAACGATTGAGAAGACCAATGAGTTAATAGGTGCTGGGCAGAATATGGTTGCTTCA TTTGAAACTTCCACCTTCGATTTTGATTTTGTGGAGTCTACTCTATTGCCTTGTGGGATGTACTATAACCCTAGTCCCATAGTTCAACCTGCATGGAATT CATGGGCCTTGCAAGAGAAAAAGTGA
AA sequence Show only first row Show all	>Potri.003G155700.1 pacid=42785653 polypeptide=Potri.003G155700.1.p locus=Potri.003G155700 ID=Potri.003G155700.1.v4.1 annot-version=v4.1 MVSCDDMQEGLGNKTGHQCCSKRKVKRGLWSPDEDEKLIKYITTHGHGSWSSVPKLAGLQRCGKSCRLRWINYLRPDLKRGSFTAQEESIIVEIHRMLGN RWAQIAKHLPGRTDNEVKNFWNSCIKKKLIAQGLDPKTHNLLSNNYKHNNNNNACELISYQYSHQQTTSTFTVDSQINDTSMDMKAPLIPFPTIPPVPDT NPYPPLLHKFSSISTCEYQNPNTLAFLESGSKSSIGSVPVSSSTSHPSEFGMLDETCMWAGGYELIQSIKSEKEQPEQQVELTIEKTNELIGAGQNMVAS FETSTFDFDFVESTLLPCGMYYNPSPIVQPAWNSWALQEKK

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DESeq2's median of ratios [POPLAR]

Mapped by: StringTie Salmon Order by: Tissue Experiment Show only core collection Show again Show schematic diagram

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Coexpressed genes

Compare expression of checked genes Schematic diagram [FLAX] Schematic diagram [POPLAR]

*If you select 4 or less genes and then press "compare expression", expression will be shown as a graph. If you select more than 4 genes, expresion will be shown as a heat map.
*Color represents relative expression level among samples for each gene.

At best	At TF class	At alias	At description		Locus	MR	r	Symbol	NWA:WT	NWB:WT	NWA:OE-ARK2	NWB:OE-ARK2	NWA:miRNA-ARK2	NWB:miRNA-ARK2	NW 0hr	WT H20	WT-NW	TUA1dEY NW	TUA1dEY+TUB15 NW	TUA1dY+TUB9 NW	Pde NW	NWA:WT GA	NWBWT GA	TW:WT	TW:WT GA	NWA:OE-ARK2 GA	NWB:OE-ARK2 GA	TW:OE-ARK2	TW:OE-ARK2 GA	NWA:miRNA-ARK2 GA	NWB:miRNA-ARK2 GA	TW:miRNA-ARK2	TW:miRNA-ARK2 GA	TW 2hr	TW 8hr	TW 24hr	TW 48hr	TW 96hr	TW 336hr	WT ACC	35S::etr1-1 H20	35S::etr1-1 ACC	LMX5::etr1-1 H20	LMX5::etr1-1 ACC	WT-TW	TUA1dEY TW	TUA1dEY+TUB15 TW	TUA1dY+TUB9 TW	Pde TW	OW:WT	OW:WT GA	OW:OE-ARK2	OW:OE-ARK2 GA	OW:miRNA-ARK2	OW:miRNA-ARK2 GA	OW 2hr	OW 8hr	OW 24hr	OW 48hr	OW 96hr	OW 336hr	Root CTR	Root LongCold	Root LongDrougt	Root LongHeat	Root LongSalt	Root ShortCold	Root ShortDrougt	Root ShortHeat	Root ShortSalt	Ptr root	Leaf CTR	Leaf LongCold	Leaf LongDrougt	Leaf LongHeat	Leaf LongSalt	Leaf ShortCold	Leaf ShortDrougt	Leaf ShortHeat	Leaf ShortSalt	Ptr leaf	Stem CTR	Stem LongCold	Stem LongDrougt	Stem LongHeat	Stem LongSalt	Stem ShortCold	Stem ShortDrougt	Stem ShortHeat	Stem ShortSalt	Ptr shoot	Ptr xylem	Ptr phloem	Ptr fiber	Ptr vessel	Ptr fiber vessel ray
AT3G12720	MYB	ATMYB67, AtY53	myb domain protein 67 (.1)		Potri.003G155700 [exp]	0	1
AT1G18670		IBS1	IMPAIRED IN BABA-INDUCED STERI...		Potri.012G067800 [exp]	2.00	0.8624
AT5G01700			Protein phosphatase 2C family ...		Potri.016G127900 [exp]	2.64	0.8344
AT1G14185			Glucose-methanol-choline (GMC)...		Potri.010G168100 [exp]	2.64	0.8635
AT3G12720	MYB	ATMYB67, AtY53	myb domain protein 67 (.1)		Potri.001G075400 [exp]	8.60	0.7870
AT1G16860			Ubiquitin-specific protease fa...		Potri.008G006100 [exp]	17.46	0.8424
AT1G09540	MYB	AtMYB61	ARABIDOPSIS THALIANA MYB DOMAI...		Potri.005G001600 [exp]	23.23	0.8474	MYB61.2
AT3G56370			Leucine-rich repeat protein ki...		Potri.016G137000 [exp]	23.49	0.8608
AT2G45340			Leucine-rich repeat protein ki...		Potri.002G147000 [exp]	26.15	0.8395
AT1G28440		HSL1	HAESA-like 1 (.1)		Potri.004G049100 [exp]	36.11	0.8324
AT1G79620			Leucine-rich repeat protein ki...		Potri.016G144100 [exp]	43.16	0.8056

Compare expression of checked genes

Potri.003G155700 coexpression network

*The number of genes in the network is adjusted within 50 genes.
*Gene name represents symbol(s) of closest Arabidopsis gene if symbol(s) for the gene itself doesn't exist.
*Circle diameter represents the number of connection with other genes within this network.
*Color for gene name represents subnetwork based on the result of network clustering.