Plant FIBer expression Database

External link	JGI Phytozome v13 [genome browser] Popgenie AspWood
Symbol
Arabidopsis homologues Show only best Show top 10	Locus ID BLAST score/e-value TF class Alias TAIR10 short description AT5G25190 100 / 9e-27 AP2_ERF ESE3 ethylene and salt inducible 3, Integrase-type DNA-binding superfamily protein (.1) AT1G15360 42 / 8e-05 AP2_ERF WIN1, SHN1 WAX INDUCER 1, SHINE 1, Integrase-type DNA-binding superfamily protein (.1)
Paralogs Show only best Show top 10	Gene ID BLAST score/e-value At best hit BLAST score/e-value TAIR10 short description Potri.001G048200 [exp] 203 / 3e-67 AT5G25190 162 / 5e-51 ethylene and salt inducible 3, Integrase-type DNA-binding superfamily protein (.1) Potri.006G261200 [exp] 116 / 9e-33 AT5G25190 169 / 9e-54 ethylene and salt inducible 3, Integrase-type DNA-binding superfamily protein (.1) Potri.018G021900 [exp] 108 / 5e-30 AT5G25190 169 / 1e-53 ethylene and salt inducible 3, Integrase-type DNA-binding superfamily protein (.1) Potri.018G131400 [exp] 42 / 7e-05 AT1G15360 194 / 6e-63 WAX INDUCER 1, SHINE 1, Integrase-type DNA-binding superfamily protein (.1) Potri.004G047500 [exp] 39 / 0.0006 AT1G28360 157 / 3e-49 ERF domain protein 12 (.1) Potri.011G056900 [exp] 39 / 0.0007 AT1G28360 149 / 6e-46 ERF domain protein 12 (.1)
Flax homologues Show only best Show top 10	Locus ID BLAST score/e-value At best hit BLAST score/e-value TAIR10 short description Lus10041023 [exp] 79 / 2e-18 AT5G25190 205 / 7e-68 ethylene and salt inducible 3, Integrase-type DNA-binding superfamily protein (.1) Lus10016815 [exp] 78 / 4e-18 AT5G25190 206 / 1e-68 ethylene and salt inducible 3, Integrase-type DNA-binding superfamily protein (.1) Lus10035859 [exp] 68 / 3e-14 AT5G25190 196 / 9e-65 ethylene and salt inducible 3, Integrase-type DNA-binding superfamily protein (.1) Lus10005343 [exp] 63 / 1e-12 AT5G25190 174 / 3e-56 ethylene and salt inducible 3, Integrase-type DNA-binding superfamily protein (.1) Lus10041614 [exp] 62 / 6e-12 AT5G25190 165 / 1e-51 ethylene and salt inducible 3, Integrase-type DNA-binding superfamily protein (.1) Lus10043271 [exp] 42 / 9e-05 AT1G15360 160 / 2e-49 WAX INDUCER 1, SHINE 1, Integrase-type DNA-binding superfamily protein (.1) Lus10019414 [exp] 42 / 9e-05 AT1G15360 207 / 1e-67 WAX INDUCER 1, SHINE 1, Integrase-type DNA-binding superfamily protein (.1) Lus10005716 [exp] 41 / 0.0002 AT1G15360 236 / 3e-79 WAX INDUCER 1, SHINE 1, Integrase-type DNA-binding superfamily protein (.1) Lus10009480 [exp] 39 / 0.0005 AT1G15360 207 / 1e-68 WAX INDUCER 1, SHINE 1, Integrase-type DNA-binding superfamily protein (.1) Lus10030097 [exp] 39 / 0.0008 AT1G15360 234 / 1e-78 WAX INDUCER 1, SHINE 1, Integrase-type DNA-binding superfamily protein (.1)
PFAM info	Clan ID Clan name Pfam ID Pfam name Pfam description CL0081 [poplar] [flax] MBD-like PF00847 [poplar] [flax] AP2 AP2 domain
Representative CDS sequence Show only first row Show all	>Potri.003G179900.2 pacid=42787171 polypeptide=Potri.003G179900.2.p locus=Potri.003G179900 ID=Potri.003G179900.2.v4.1 annot-version=v4.1 ATGTTGTTTTTCTGCACTAATGAGAGTCTTGAGCGAGTTTCGAACTGTTTTAATTCTTGTACTAAGATGAAACGTTTCGTGTTTATTTTGGGCTGCAGGA AGACTAGAATATGGTTAGGCACATTCGAAACGGCCGAGGACGCGGCACGGGCATACGACGAGGCGGCAAGGCTAATGTGCGGGCCAAAAGCACGTACAAA TTTCCCTCACAACCCCAACGAACCCCAATCATCATCGTCAAAGCTTCTCTCAGCTACCTTGGCAGCCAAGCTACATAAATGTCACATGACTTCTCTACAA GCAACCAAGAAAAATGTAACAAAACAGTCACATGATGCACAATGCACCAGTTTTGGCACTAGCCATGGCATTGCCGGAAAAACTGTCGAAAACGGCTCGA AATGGCAGGAGGGGAATTGGGTTGGGGGGGGGAGTCAAGCGGGGAACGATGACCATCAAGAACATTTTAAGTCACTTGAAGATCACCATATAGAGCAAAT GATAGAGGAGTTGCTAGATAGAGGATCCATGGAGTTCTGTTATGTAGATTCAACATGA
AA sequence Show only first row Show all	>Potri.003G179900.2 pacid=42787171 polypeptide=Potri.003G179900.2.p locus=Potri.003G179900 ID=Potri.003G179900.2.v4.1 annot-version=v4.1 MLFFCTNESLERVSNCFNSCTKMKRFVFILGCRKTRIWLGTFETAEDAARAYDEAARLMCGPKARTNFPHNPNEPQSSSSKLLSATLAAKLHKCHMTSLQ ATKKNVTKQSHDAQCTSFGTSHGIAGKTVENGSKWQEGNWVGGGSQAGNDDHQEHFKSLEDHHIEQMIEELLDRGSMEFCYVDST

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DESeq2's median of ratios [POPLAR]

Mapped by: StringTie Salmon Order by: Tissue Experiment Show only core collection Show again Show schematic diagram

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Coexpressed genes

Compare expression of checked genes Schematic diagram [FLAX] Schematic diagram [POPLAR]

*If you select 4 or less genes and then press "compare expression", expression will be shown as a graph. If you select more than 4 genes, expresion will be shown as a heat map.
*Color represents relative expression level among samples for each gene.

At best	At TF class	At alias	At description		Locus	MR	r	Symbol	NWA:WT	NWB:WT	NWA:OE-ARK2	NWB:OE-ARK2	NWA:miRNA-ARK2	NWB:miRNA-ARK2	NW 0hr	WT H20	WT-NW	TUA1dEY NW	TUA1dEY+TUB15 NW	TUA1dY+TUB9 NW	Pde NW	NWA:WT GA	NWBWT GA	TW:WT	TW:WT GA	NWA:OE-ARK2 GA	NWB:OE-ARK2 GA	TW:OE-ARK2	TW:OE-ARK2 GA	NWA:miRNA-ARK2 GA	NWB:miRNA-ARK2 GA	TW:miRNA-ARK2	TW:miRNA-ARK2 GA	TW 2hr	TW 8hr	TW 24hr	TW 48hr	TW 96hr	TW 336hr	WT ACC	35S::etr1-1 H20	35S::etr1-1 ACC	LMX5::etr1-1 H20	LMX5::etr1-1 ACC	WT-TW	TUA1dEY TW	TUA1dEY+TUB15 TW	TUA1dY+TUB9 TW	Pde TW	OW:WT	OW:WT GA	OW:OE-ARK2	OW:OE-ARK2 GA	OW:miRNA-ARK2	OW:miRNA-ARK2 GA	OW 2hr	OW 8hr	OW 24hr	OW 48hr	OW 96hr	OW 336hr	Root CTR	Root LongCold	Root LongDrougt	Root LongHeat	Root LongSalt	Root ShortCold	Root ShortDrougt	Root ShortHeat	Root ShortSalt	Ptr root	Leaf CTR	Leaf LongCold	Leaf LongDrougt	Leaf LongHeat	Leaf LongSalt	Leaf ShortCold	Leaf ShortDrougt	Leaf ShortHeat	Leaf ShortSalt	Ptr leaf	Stem CTR	Stem LongCold	Stem LongDrougt	Stem LongHeat	Stem LongSalt	Stem ShortCold	Stem ShortDrougt	Stem ShortHeat	Stem ShortSalt	Ptr shoot	Ptr xylem	Ptr phloem	Ptr fiber	Ptr vessel	Ptr fiber vessel ray
AT5G25190	AP2_ERF	ESE3	ethylene and salt inducible 3,...		Potri.003G179900 [exp]	0	1
AT5G19530		ACL5	ACAULIS 5, S-adenosyl-L-methio...		Potri.010G089200 [exp]	2.44	0.8702
AT2G21050		LAX2	like AUXIN RESISTANT 2 (.1)		Potri.004G172800 [exp]	2.82	0.9094	PtrAUX5
AT2G24960			unknown protein		Potri.004G172900 [exp]	4.58	0.8858
AT5G14070		ROXY2	Thioredoxin superfamily protei...		Potri.001G060600 [exp]	6.32	0.8714
AT5G19530		ACL5	ACAULIS 5, S-adenosyl-L-methio...		Potri.008G151800 [exp]	7.34	0.8958
AT1G54610			Protein kinase superfamily pro...		Potri.008G204400 [exp]	10.95	0.8414
AT5G64080		AtXYP1	xylogen protein 1, Bifunctiona...		Potri.003G020200 [exp]	11.83	0.8720
AT3G08490			unknown protein		Potri.001G267200 [exp]	11.95	0.8529
AT3G08490			unknown protein		Potri.009G061300 [exp]	16.97	0.8457
AT5G02420			unknown protein		Potri.009G030200 [exp]	20.71	0.8593

Compare expression of checked genes

Potri.003G179900 coexpression network

*The number of genes in the network is adjusted within 50 genes.
*Gene name represents symbol(s) of closest Arabidopsis gene if symbol(s) for the gene itself doesn't exist.
*Circle diameter represents the number of connection with other genes within this network.
*Color for gene name represents subnetwork based on the result of network clustering.