Plant FIBer expression Database

External link	JGI Phytozome v13 [genome browser] Popgenie AspWood
Symbol
Arabidopsis homologues Show only best Show top 10	Locus ID BLAST score/e-value TF class Alias TAIR10 short description AT3G11450 663 / 0 DnaJ domain ;Myb-like DNA-binding domain (.1) AT5G06110 363 / 1e-116 DnaJ domain ;Myb-like DNA-binding domain (.1.2) AT5G45420 86 / 6e-18 MYB maMYB membrane anchored MYB, Duplicated homeodomain-like superfamily protein (.1) AT1G74250 73 / 3e-13 DNAJ heat shock N-terminal domain-containing protein (.1) AT1G59725 55 / 9e-08 DNAJ heat shock family protein (.1) AT5G16650 50 / 3e-07 Chaperone DnaJ-domain superfamily protein (.1) AT1G10350 52 / 7e-07 DNAJ heat shock family protein (.1) AT3G47940 50 / 3e-06 DNAJ heat shock family protein (.1) AT5G25530 50 / 3e-06 DNAJ heat shock family protein (.1) AT4G39250 46 / 4e-06 MYB RSM2, ATRL1 RADIALIS-LIKE SANT/MYB 2, RAD-like 1 (.1)
Paralogs Show only best Show top 10	Gene ID BLAST score/e-value At best hit BLAST score/e-value TAIR10 short description Potri.001G035800 [exp] 931 / 0 AT3G11450 679 / 0.0 DnaJ domain ;Myb-like DNA-binding domain (.1) Potri.001G147000 [exp] 89 / 4e-19 AT5G45420 234 / 1e-75 membrane anchored MYB, Duplicated homeodomain-like superfamily protein (.1) Potri.009G018400 [exp] 81 / 1e-15 AT1G74250 460 / 2e-155 DNAJ heat shock N-terminal domain-containing protein (.1) Potri.013G078200 [exp] 54 / 9e-09 AT5G16650 198 / 6e-67 Chaperone DnaJ-domain superfamily protein (.1) Potri.019G041400 [exp] 54 / 1e-08 AT5G16650 193 / 5e-65 Chaperone DnaJ-domain superfamily protein (.1) Potri.006G246700 [exp] 54 / 1e-07 AT5G25530 394 / 1e-137 DNAJ heat shock family protein (.1) Potri.010G035000 [exp] 54 / 1e-07 AT1G10350 429 / 1e-151 DNAJ heat shock family protein (.1) Potri.002G103900 [exp] 51 / 1e-07 AT2G33735 147 / 2e-46 Chaperone DnaJ-domain superfamily protein (.1) Potri.018G034600 [exp] 54 / 2e-07 AT5G25530 410 / 8e-144 DNAJ heat shock family protein (.1)
Flax homologues Show only best Show top 10	Locus ID BLAST score/e-value At best hit BLAST score/e-value TAIR10 short description Lus10026919 [exp] 753 / 0 AT5G06110 752 / 0.0 DnaJ domain ;Myb-like DNA-binding domain (.1.2) Lus10020118 [exp] 751 / 0 AT5G06110 749 / 0.0 DnaJ domain ;Myb-like DNA-binding domain (.1.2) Lus10020117 [exp] 749 / 0 AT5G06110 736 / 0.0 DnaJ domain ;Myb-like DNA-binding domain (.1.2) Lus10026920 [exp] 681 / 0 AT5G06110 681 / 0.0 DnaJ domain ;Myb-like DNA-binding domain (.1.2) Lus10039841 [exp] 86 / 6e-18 AT5G45420 249 / 2e-81 membrane anchored MYB, Duplicated homeodomain-like superfamily protein (.1) Lus10018605 [exp] 83 / 5e-17 AT5G45420 247 / 7e-81 membrane anchored MYB, Duplicated homeodomain-like superfamily protein (.1) Lus10034688 [exp] 73 / 3e-13 AT1G74250 468 / 5e-158 DNAJ heat shock N-terminal domain-containing protein (.1) Lus10017846 [exp] 68 / 1e-11 AT1G74250 464 / 1e-156 DNAJ heat shock N-terminal domain-containing protein (.1) Lus10036429 [exp] 51 / 6e-08 AT5G45420 93 / 4e-24 membrane anchored MYB, Duplicated homeodomain-like superfamily protein (.1) Lus10013981 [exp] 54 / 2e-07 AT2G20560 488 / 8e-175 DNAJ heat shock family protein (.1)
PFAM info	Clan ID Clan name Pfam ID Pfam name Pfam description CL0392 [poplar] [flax] Chaperone-J PF00226 [poplar] [flax] DnaJ DnaJ domain CL0123 [poplar] [flax] HTH PF00249 [poplar] [flax] Myb_DNA-binding Myb-like DNA-binding domain
Representative CDS sequence Show only first row Show all	>Potri.003G190000.2 pacid=42785566 polypeptide=Potri.003G190000.2.p locus=Potri.003G190000 ID=Potri.003G190000.2.v4.1 annot-version=v4.1 ATGGCCATCCAAACTAGTCTTCGTCTTATTTCTTACTCACAAGAGCTTGTAGATGGACAGCCATTGCATGTTTCTTCAAACGGCCTTCCAATCAAAGCTT TGAAATTCGAACCAGCTGGGCATGCTTTTCACACTGCTGCTTTAAAACTCCTTGGCTGGGAGGAGGAAGGCACAAAGACTGAAGATCAGAAAGTGTCCAG TGACAAACAACAATCATACATGCCATCATCTGAATCCTATAGCACCAAAGGTAAAAAGAAATCTGGATCTGGAGATACTCAACAGGATCACTATGCCTTG TTGGGTTTAGGCCATTTGAGATATCTTGCCACAGAAGAACAAATACGGAAAAGCTATCGTGAGGTTGCCTTGAAGTATCATCCAGACAAACAGGCTGCTA TTCTTCTTGCCGAGGAAAGTGAGGCTGCAAAACAAGCAAAAAAGGATGAAATAGAGAGCCACTTTAAAGCAATCCAAGAAGCATATGAAGCTTTGATTGA TCCTGTGAAGAGAAGAATATACGACTCTACAGATGAGTTTGATGATGAAATTCCCACTGACTGTGCCCCTCAAGACTTCTTCAAGGTGTTTGGTCCTGCT TTTATGAGGAATGGACGATGGTCAGTTAACCAAACAGTCCCATCTTTAGGTGATGAGAAAACTTCTTTAAAAGAAGTAGATAGCTTTTATAATTTTTGGT ACAGCTTTAAAAGCTGGAGAGAGTTCCCTCATGCGGATGAATTTGATCTTGAAGAAGCCGAGTCTCGTGACCACAAGAGATGGATGGAGAGGCAGAATGC AAAGCTTTCAGAAAAGGCAAGAAAGGAAGACTATGCACGGATACGTACTCTTGTTGACAGTGCCTATAAGAGAGACCCAAGAATATTGAGGAGAAAGGAG GAGGAGAAAGCCGAGAAGCAAAGAAAGAAGGAAGCTAAATATTTGGCAAAAAGGTTGCAAGAAGAAGAAGCTGCAAGGGCTGCTGAAGAGGAGAAACGCC AGAAAGAAGAGGAGGAAAAACGTGTTGCTGAAGCTGCTTTACAGCAGAAGAAATTAAAGGAGAAAGAGAAGAAGCTTTTGCGTAAAGAGCGGAGTCGCCT TCGAACTCTTTCAGGATCTGTTCTGTCACAGTGTTTGCTCAATCTTAGCGAGGCTGATGTGGAGAATCTTTGTATGTCACTGGATATTGAGCAGCTTAGG AGTTTATGTGACAGGATTGAAGGCAAAGAAGTGCTAGAGCAAGCAAAAGTACTGAGAGATGCATGTGGATGTGATCATGATTCTGGGAGCAGTAAACAAG AAGAGAAGAAGATTTCACAGCAGAATGGCTCTTTGAACTCCAATGGAAGTTCCCCATTAAGCAGCTCTGGAAAGAAGGAGAAACCTTGGGGCCGAGAAGA AATTGAGCTTCTGAGAAAAGGAACGCAGAAATATCCTAAAGGAACATCGCGGAGGTGGGAGGTTATTTCAGACTACATTGGTACAGGAAGATCTGTTGAA GAAATTTTAAAAGCAACAAAAACAGTCCTCCTTCAGAAACCTGACTCCGCTAAAGCTTTTAATTCTTTTCTTGAGAAGAGGAAACCTGCACAATCCATTG AATCTCCCCTTTCAACTAGAGAGGAAATAGAAGGGGCATCAACTGTTCAAGCACTTGAAAGTAGTGCTGCAAAGGTGGCTCAAGAAGAGTCTTCAAGTGA CACGGACAAGCAGAAAACTGATGATGTGGTCACTGCAAATGGGGTGTCTTCAAGTGCTGACCAAGATGTGTGGTCTGCGGTGCAAGAAAGAGCTCTGGTT CAGGCTCTAAAAACATTCCCAAAAGAAACCAGTCAACGTTGGGAGCGGGTTGCTGCTGCTGTTCCTGGGAAAACTATAAACCAGTGCAAGAAAAAATTTG CTTTGCTGAAGGAGAGCTTTAGAAACAAGAAAAACACAGCATAG
AA sequence Show only first row Show all	>Potri.003G190000.2 pacid=42785566 polypeptide=Potri.003G190000.2.p locus=Potri.003G190000 ID=Potri.003G190000.2.v4.1 annot-version=v4.1 MAIQTSLRLISYSQELVDGQPLHVSSNGLPIKALKFEPAGHAFHTAALKLLGWEEEGTKTEDQKVSSDKQQSYMPSSESYSTKGKKKSGSGDTQQDHYAL LGLGHLRYLATEEQIRKSYREVALKYHPDKQAAILLAEESEAAKQAKKDEIESHFKAIQEAYEALIDPVKRRIYDSTDEFDDEIPTDCAPQDFFKVFGPA FMRNGRWSVNQTVPSLGDEKTSLKEVDSFYNFWYSFKSWREFPHADEFDLEEAESRDHKRWMERQNAKLSEKARKEDYARIRTLVDSAYKRDPRILRRKE EEKAEKQRKKEAKYLAKRLQEEEAARAAEEEKRQKEEEEKRVAEAALQQKKLKEKEKKLLRKERSRLRTLSGSVLSQCLLNLSEADVENLCMSLDIEQLR SLCDRIEGKEVLEQAKVLRDACGCDHDSGSSKQEEKKISQQNGSLNSNGSSPLSSSGKKEKPWGREEIELLRKGTQKYPKGTSRRWEVISDYIGTGRSVE EILKATKTVLLQKPDSAKAFNSFLEKRKPAQSIESPLSTREEIEGASTVQALESSAAKVAQEESSSDTDKQKTDDVVTANGVSSSADQDVWSAVQERALV QALKTFPKETSQRWERVAAAVPGKTINQCKKKFALLKESFRNKKNTA

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DESeq2's median of ratios [POPLAR]

Mapped by: StringTie Salmon Order by: Tissue Experiment Show only core collection Show again Show schematic diagram

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Coexpressed genes

Compare expression of checked genes Schematic diagram [FLAX] Schematic diagram [POPLAR]

*If you select 4 or less genes and then press "compare expression", expression will be shown as a graph. If you select more than 4 genes, expresion will be shown as a heat map.
*Color represents relative expression level among samples for each gene.

At best	At TF class	At alias	At description		Locus	MR	r	Symbol	NWA:WT	NWB:WT	NWA:OE-ARK2	NWB:OE-ARK2	NWA:miRNA-ARK2	NWB:miRNA-ARK2	NW 0hr	WT H20	WT-NW	TUA1dEY NW	TUA1dEY+TUB15 NW	TUA1dY+TUB9 NW	Pde NW	NWA:WT GA	NWBWT GA	TW:WT	TW:WT GA	NWA:OE-ARK2 GA	NWB:OE-ARK2 GA	TW:OE-ARK2	TW:OE-ARK2 GA	NWA:miRNA-ARK2 GA	NWB:miRNA-ARK2 GA	TW:miRNA-ARK2	TW:miRNA-ARK2 GA	TW 2hr	TW 8hr	TW 24hr	TW 48hr	TW 96hr	TW 336hr	WT ACC	35S::etr1-1 H20	35S::etr1-1 ACC	LMX5::etr1-1 H20	LMX5::etr1-1 ACC	WT-TW	TUA1dEY TW	TUA1dEY+TUB15 TW	TUA1dY+TUB9 TW	Pde TW	OW:WT	OW:WT GA	OW:OE-ARK2	OW:OE-ARK2 GA	OW:miRNA-ARK2	OW:miRNA-ARK2 GA	OW 2hr	OW 8hr	OW 24hr	OW 48hr	OW 96hr	OW 336hr	Root CTR	Root LongCold	Root LongDrougt	Root LongHeat	Root LongSalt	Root ShortCold	Root ShortDrougt	Root ShortHeat	Root ShortSalt	Ptr root	Leaf CTR	Leaf LongCold	Leaf LongDrougt	Leaf LongHeat	Leaf LongSalt	Leaf ShortCold	Leaf ShortDrougt	Leaf ShortHeat	Leaf ShortSalt	Ptr leaf	Stem CTR	Stem LongCold	Stem LongDrougt	Stem LongHeat	Stem LongSalt	Stem ShortCold	Stem ShortDrougt	Stem ShortHeat	Stem ShortSalt	Ptr shoot	Ptr xylem	Ptr phloem	Ptr fiber	Ptr vessel	Ptr fiber vessel ray
AT3G11450			DnaJ domain ;Myb-like DNA-bind...		Potri.003G190000 [exp]	0	1
AT5G67530		ATPUB49	plant U-box 49 (.1)		Potri.005G148900 [exp]	3.16	0.7781
AT5G11500			unknown protein		Potri.006G241900 [exp]	5.38	0.6730
AT3G19360	C3HZnF		Zinc finger (CCCH-type) family...		Potri.009G130600 [exp]	5.65	0.7695
AT1G29350			Kinase-related protein of unkn...		Potri.011G078800 [exp]	6.00	0.7487
AT3G51790		ATG1	transmembrane protein G1P-rela...		Potri.003G205200 [exp]	7.07	0.7492
AT5G66100			winged-helix DNA-binding trans...		Potri.005G243600 [exp]	9.74	0.6856
AT4G07410		PCN	POPCORN, Transducin family pro...		Potri.014G014900 [exp]	9.94	0.7739
AT3G18600			P-loop containing nucleoside t...		Potri.001G250700 [exp]	11.31	0.7442
AT2G47990		SWA1, EDA13, ED...	SLOW WALKER1, EMBRYO SAC DEVEL...		Potri.002G213500 [exp]	14.96	0.7459
AT1G14060			GCK domain-containing protein ...		Potri.013G099100 [exp]	16.00	0.6685

Compare expression of checked genes

Potri.003G190000 coexpression network

*The number of genes in the network is adjusted within 50 genes.
*Gene name represents symbol(s) of closest Arabidopsis gene if symbol(s) for the gene itself doesn't exist.
*Circle diameter represents the number of connection with other genes within this network.
*Color for gene name represents subnetwork based on the result of network clustering.