Plant FIBer expression Database

External link	JGI Phytozome v13 [genome browser] Popgenie AspWood
Symbol
Arabidopsis homologues Show only best Show top 10	Locus ID BLAST score/e-value TF class Alias TAIR10 short description AT3G14460 508 / 2e-156 LRR and NB-ARC domains-containing disease resistance protein (.1) AT3G14470 461 / 1e-142 NB-ARC domain-containing disease resistance protein (.1) AT3G50950 194 / 1e-50 ZAR1 HOPZ-ACTIVATED RESISTANCE 1 (.1.2) AT3G07040 188 / 2e-48 RPS3, RPM1 RESISTANCE TO PSEUDOMONAS SYRINGAE 3, RESISTANCE TO P. SYRINGAE PV MACULICOLA 1, NB-ARC domain-containing disease resistance protein (.1) AT1G59218 172 / 4e-43 Disease resistance protein (CC-NBS-LRR class) family (.1), Disease resistance protein (CC-NBS-LRR class) family (.2) AT1G58848 172 / 4e-43 Disease resistance protein (CC-NBS-LRR class) family (.1), Disease resistance protein (CC-NBS-LRR class) family (.2) AT1G58807 164 / 1e-40 Disease resistance protein (CC-NBS-LRR class) family (.1), Disease resistance protein (CC-NBS-LRR class) family (.2) AT1G59124 162 / 2e-40 Disease resistance protein (CC-NBS-LRR class) family (.1) AT1G50180 159 / 2e-39 NB-ARC domain-containing disease resistance protein (.1) AT1G58390 157 / 6e-39 Disease resistance protein (CC-NBS-LRR class) family (.1)
Paralogs Show only best Show top 10	Gene ID BLAST score/e-value At best hit BLAST score/e-value TAIR10 short description Potri.005G007001 [exp] 1461 / 0 AT3G14470 647 / 0.0 NB-ARC domain-containing disease resistance protein (.1) Potri.001G029300 [exp] 1147 / 0 AT3G14470 676 / 0.0 NB-ARC domain-containing disease resistance protein (.1) Potri.003G200500 [exp] 1089 / 0 AT3G14470 594 / 0.0 NB-ARC domain-containing disease resistance protein (.1) Potri.003G200200 [exp] 1088 / 0 AT3G14470 634 / 0.0 NB-ARC domain-containing disease resistance protein (.1) Potri.T127106 [exp] 1069 / 0 AT3G14470 594 / 0.0 NB-ARC domain-containing disease resistance protein (.1) Potri.T126806 [exp] 1063 / 0 AT3G14470 587 / 0.0 NB-ARC domain-containing disease resistance protein (.1) Potri.003G055600 [exp] 1027 / 0 AT3G14470 615 / 0.0 NB-ARC domain-containing disease resistance protein (.1) Potri.T126706 [exp] 1001 / 0 AT3G14470 565 / 0.0 NB-ARC domain-containing disease resistance protein (.1) Potri.T126306 [exp] 980 / 0 AT3G14470 585 / 0.0 NB-ARC domain-containing disease resistance protein (.1)
Flax homologues Show only best Show top 10	Locus ID BLAST score/e-value At best hit BLAST score/e-value TAIR10 short description Lus10024173 [exp] 928 / 0 AT3G14460 681 / 0.0 LRR and NB-ARC domains-containing disease resistance protein (.1) Lus10039509 [exp] 907 / 0 AT3G14460 613 / 0.0 LRR and NB-ARC domains-containing disease resistance protein (.1) Lus10007261 [exp] 877 / 0 AT3G14460 654 / 0.0 LRR and NB-ARC domains-containing disease resistance protein (.1) Lus10039540 [exp] 871 / 0 AT3G14470 727 / 0.0 NB-ARC domain-containing disease resistance protein (.1) Lus10005321 [exp] 566 / 2e-178 AT3G14460 607 / 0.0 LRR and NB-ARC domains-containing disease resistance protein (.1) Lus10026109 [exp] 550 / 8e-173 AT3G14470 598 / 0.0 NB-ARC domain-containing disease resistance protein (.1) Lus10026132 [exp] 547 / 6e-170 AT3G14460 594 / 0.0 LRR and NB-ARC domains-containing disease resistance protein (.1) Lus10016316 [exp] 475 / 3e-146 AT3G14470 494 / 6e-156 NB-ARC domain-containing disease resistance protein (.1) Lus10002736 [exp] 343 / 3e-106 AT3G14470 317 / 1e-98 NB-ARC domain-containing disease resistance protein (.1) Lus10005218 [exp] 340 / 1e-97 AT3G14470 379 / 2e-113 NB-ARC domain-containing disease resistance protein (.1)
PFAM info	Clan ID Clan name Pfam ID Pfam name Pfam description CL0023 [poplar] [flax] P-loop_NTPase PF00931 [poplar] [flax] NB-ARC NB-ARC domain
Representative CDS sequence Show only first row Show all	>Potri.003G200800.1 pacid=42785776 polypeptide=Potri.003G200800.1.p locus=Potri.003G200800 ID=Potri.003G200800.1.v4.1 annot-version=v4.1 ATGGCTGCTGCTTTGGTAGGTGGAGCTTTTCTTTCGGCTTCCCTCCAGGTTTTGTTTGATAGAATGGCTTCTCGCCAGGTTGTTGACTTCTTTAAAAGCC AAAAACTAAATGATAGGCTGCTGAAGAAGTTGAAGATACTGATGATTACTGTTAATAAGGTGCTCAATGATGCTGAAAAGAAGCAGATCAGTGACTCGTT TGTAAAAGAGTGGCTTGACGAGCTCAAAGATGCTGTTTATGAAGCAGAGGACTTCTTGGATGAGGTTGCTTATGAAGGCTTGAGACTGGAGGTTGAAGCT GGCTCTCAAACCAGCACTTATCAGGTTAGAGGCTTTTTATCTTCTCGTAATACAGTCCAGGAAGAGAAGGAAGAGATGGGAGCTAAGTTAGAGGAGATTC TTGAGCTGCTAGAATATTTAGTACAGCAAAAGGATGCTCTTGGACTGAAAGAGGGTATTGGAGAACAACCCTTGTCATACAAAATACCAACAACTTCTCT GGTGGATGGATCTGGGGTTTTTGGTAGGCATGACGATAAGGAAGCCATAATGAAGTTGATGTTATCTGAAGATGCCAAGCTAGATGTGATTCCTATAGTG GGTATGGGTGGGGTTGGTAAAACCACTCTTGCTCAGCTTATCTACAATGATAGCAGAGTTCAAGAGCGGTTTGATCTGAAGGTATGGGTCTCTGTTTCGG AGGAATTTGATGTTTTCAAGTTAATCAAAGATATGCTTCAAGAGGTCGGTTCACTGAATTGTGATACCATGACTGCAGATCAGCTTCACAATGAGGTAGA GAAGAGAACAGCAGGGAAAACAGTGCTGATTGTTTTAGATGATGTTTGGTGTGAGAATCAAGATCAGTGGGATTCTTTATTGACACCTTTAAAGTCTGTG AGACAAGGGAGTAAGATCGTCGTTACAACGCGCAATGATAGTGTAGCATCGGTCAAGTCAACTGTTCCAACACATCATCTGCAGAAATTAACTGAAGACG ACTGCTGGTTGGTTTTTGCAAAACAGGCATTTGATGATGGAAGTTCTGGTACATGTCCAGACTTGGAAGAAATTGGCAGAGGAATTGTAAGAAAGTGCAA TGGCCTACCTTTAGCTGCAAAAGCTCTTGGGGGTCTCCTACGCTCCAAAAGAGAAGCAAAAGATTGGAAGAAAGTGTTGAAGAGTGACATGTGGACTTTG CCGAAAGATCCGATTCTTCCAGCTTTAAGACTGAGCTACTATTACCTTCCTGCCCCACTGAAGCAGTGCTTTGCGTATTGTGCGCTATTTCCCAAAGATT ATAGATTCAACAAGGATGATTTAGTACGTTTGTGGATGGCAGAGGGTTTTCTTGTCCCACTCAAAGGAGATGAGGAGATTGAAGATGTAGGTGGCGAGTG CTTTGATGATCTTGTTTCCAGGTCATTTTTCCAACGATATTCTAGTGACAATCTATCATTGTTTATTATGCACGACCTCATTAATGATTTGGCCAACTCT GTGGCGGGGGAGTTTTGCTTCCTGTTGGAGGATGATGATTCAAACAAGATTGCAGCGAAGGCTCGTCATTTCTCATATGTACCAAAGTCATTTGATTCCC TTAAAAAATTCGTAGGAATCCATGGAGCTGAACATTTGCGCACTTTTCTACCGTTGCCAAAGCAGTGGGAAGACAACCGGTTTGAAGATGGCCTAACACG TTATTTATTACCTAGACTTGGACGATTGCGAGTGCTATCCTTGTCTCGCTATTCTAGCGTAGCTGAGTTGGCTAATTCAATGGGAAAGTTAAAGCATCTG CGATATCTGAACCTTTGGGGAACATCAATAGAAGAGTTCCCTGAAGTTGTGAGTGCTGCGTACAATTTGCAAACGCTAATCTTGGAAGATTGCAAAGGGG TTGCTGAATTGCCTAATTCAATTGGCAATCTGAAGCAATTACGATATGTGAATCTCAAGAAAACAGCAATCAAACTGTTACCTGCATCTTTGAGTTGTTT GTATAATCTGCAAACATTGATCTTGGAAGATTGTGAAGAGCTTGTTGAGTTGCCTGATTCAATAGGAAATTTGAAATGCTTACGACATGTGAATCTTACG AAAACAGCAATTGAAAGGTTACCTGCATCCATGAGTGGATTGTATAACTTGCGAACTTTAATCTTGAAGCAATGCAAGAAACTTACGGAGTTGCCAGCTG ATATGGCAAGGTTAATCAACTTGCAAAATCTTGATATTTTAGGAACAAAGCTGTCGAAGATGCCTTCACAGATGGATAGATTGACAAAGCTCCAAACACT GAGTGATTTTTTTCTGGGAAGACAGAGTGGTTCTAGCATTATAGAGTTGGGCAAGCTTCAACATCTACAAGGGGGAGTAACGATTTGGGGTCTTCAAAAT GTTGTGGACGCTCAAGATGCTTTGGAAGCCAATTTGAAGGGTATGAAACAGGTTAAAGTGTTGGAATTGAGATGGGATGGCGATGCTGATGACTCACAGC ACCAAAGAGACGTTCTTGATAAATTACAGCCCCATACAGGTGTGACTAGTCTTTATGTTGGTGGTTATGGGGGTACAAGGTTTCCAGATTGGATAGCAGA CATTTCTTTCTCAAATATAGTAGTGTTGGATCTTTTCAAATGTGCATATTGCACCTCTTTACCTCCACTTGGACAGTTAGGGTCTTTAAAGGAACTATGC ATCCAGGAATTTGAAGGAGTTGTGGTGGCGGGTCACGAGTTCTATGGAAGCTGCACATCCTTGAAGGAGCCATTTGGATCCCTCGAGATTTTAACTTTTG TTAGCATGCCACAATGGAATGAATGGATTTCTGATGAGGACATGGAAGCTTTCCCTCTTCTTCGAGAGCTTCACATATCAGGCTGCCACAGCCTAACGAA GGCATTGCCGAATCATCACCTTCCTTCTTTAACAGAACTTAACATCCTTGACTGTCAGCAGCTTGGAGGCCCATTTCCTTGGTATCCAATCATTAACAGA TTTTGGTTAAATGATGCTTCTCGGGATCTGCGTTTAGAGAAATTGCCTTCTGAGTTGTATGAACTCGAGATTCGCAAATTGGACTCCGTAGATTCGTTGG TCAAGGAATTGGAGCTGATGGGTTGCTTATCCTCTATGTTTGAAAATATTGAAATAGATAATTTTGATCTACTCAAGTGTTTCCCGCTAGAGTTGTTCTC CAACTTACAGACTCTAAAAATCAAGAATAGTCCGAATCTGAATTCTCTTTCAGCATATGAAAAGCCTTATAACAGGTCTCTCCGTTTCTTGGAAATCCAG GGGTGTCCTAACTTAGTTTGTTTTCCCAAAGGAGGGTTATCTGCTCCGAATTTGACAAAGATTAGGTTACTTGATTGCATAAATTTAAAGGCGTTGCCTG AGCAAATGTCTTTCCTTTTTTCCCTTGTGGATTTGGAACTGAAAGGACTTCCTGAACTTGAGTCATTTCCAGAAGGGGGTTTGCCACTTGATCTAGAAAC ACTCTGCATCCAAAGTTGCAATAAACTCATTGCAAGCCGTGCACAATGGGATTTGCTTCTTCAATGTTCTCTTTCAAAATTAATAATTGCTTACAATGAA GATGTGGAATCTTTCCCTGACGGGCTGCTGCTGCCTTTAGAACTTCGGTCCCTTGAAATCCGGTCCCTTGAAAATTTGAAATCTCTGGACTACAACGGGC TTCTACACCTCACCTGTCTTAGAGAATTGAAGATTGACACATGCCCTAATCTCCAATCCATACCTGAAAAAGGGCTGCCCTTCTCCCTTTATTCTTTTGA AATCAGTGGATGCCCTCAGCTAGAAAAAAGGTGTGAAAAGGAGAAAGGGGAAGATTGGCCCAAGATTTCTCATTTCCTCAACATCAAGATTGATGGCCGC TGGATTGAACCAGAAGACTGGTAG
AA sequence Show only first row Show all	>Potri.003G200800.1 pacid=42785776 polypeptide=Potri.003G200800.1.p locus=Potri.003G200800 ID=Potri.003G200800.1.v4.1 annot-version=v4.1 MAAALVGGAFLSASLQVLFDRMASRQVVDFFKSQKLNDRLLKKLKILMITVNKVLNDAEKKQISDSFVKEWLDELKDAVYEAEDFLDEVAYEGLRLEVEA GSQTSTYQVRGFLSSRNTVQEEKEEMGAKLEEILELLEYLVQQKDALGLKEGIGEQPLSYKIPTTSLVDGSGVFGRHDDKEAIMKLMLSEDAKLDVIPIV GMGGVGKTTLAQLIYNDSRVQERFDLKVWVSVSEEFDVFKLIKDMLQEVGSLNCDTMTADQLHNEVEKRTAGKTVLIVLDDVWCENQDQWDSLLTPLKSV RQGSKIVVTTRNDSVASVKSTVPTHHLQKLTEDDCWLVFAKQAFDDGSSGTCPDLEEIGRGIVRKCNGLPLAAKALGGLLRSKREAKDWKKVLKSDMWTL PKDPILPALRLSYYYLPAPLKQCFAYCALFPKDYRFNKDDLVRLWMAEGFLVPLKGDEEIEDVGGECFDDLVSRSFFQRYSSDNLSLFIMHDLINDLANS VAGEFCFLLEDDDSNKIAAKARHFSYVPKSFDSLKKFVGIHGAEHLRTFLPLPKQWEDNRFEDGLTRYLLPRLGRLRVLSLSRYSSVAELANSMGKLKHL RYLNLWGTSIEEFPEVVSAAYNLQTLILEDCKGVAELPNSIGNLKQLRYVNLKKTAIKLLPASLSCLYNLQTLILEDCEELVELPDSIGNLKCLRHVNLT KTAIERLPASMSGLYNLRTLILKQCKKLTELPADMARLINLQNLDILGTKLSKMPSQMDRLTKLQTLSDFFLGRQSGSSIIELGKLQHLQGGVTIWGLQN VVDAQDALEANLKGMKQVKVLELRWDGDADDSQHQRDVLDKLQPHTGVTSLYVGGYGGTRFPDWIADISFSNIVVLDLFKCAYCTSLPPLGQLGSLKELC IQEFEGVVVAGHEFYGSCTSLKEPFGSLEILTFVSMPQWNEWISDEDMEAFPLLRELHISGCHSLTKALPNHHLPSLTELNILDCQQLGGPFPWYPIINR FWLNDASRDLRLEKLPSELYELEIRKLDSVDSLVKELELMGCLSSMFENIEIDNFDLLKCFPLELFSNLQTLKIKNSPNLNSLSAYEKPYNRSLRFLEIQ GCPNLVCFPKGGLSAPNLTKIRLLDCINLKALPEQMSFLFSLVDLELKGLPELESFPEGGLPLDLETLCIQSCNKLIASRAQWDLLLQCSLSKLIIAYNE DVESFPDGLLLPLELRSLEIRSLENLKSLDYNGLLHLTCLRELKIDTCPNLQSIPEKGLPFSLYSFEISGCPQLEKRCEKEKGEDWPKISHFLNIKIDGR WIEPEDW

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DESeq2's median of ratios [POPLAR]

Mapped by: StringTie Salmon Order by: Tissue Experiment Show only core collection Show again Show schematic diagram

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Coexpressed genes

Compare expression of checked genes Schematic diagram [FLAX] Schematic diagram [POPLAR]

*If you select 4 or less genes and then press "compare expression", expression will be shown as a graph. If you select more than 4 genes, expresion will be shown as a heat map.
*Color represents relative expression level among samples for each gene.

At best	At TF class	At alias	At description		Locus	MR	r	Symbol	NWA:WT	NWB:WT	NWA:OE-ARK2	NWB:OE-ARK2	NWA:miRNA-ARK2	NWB:miRNA-ARK2	NW 0hr	WT H20	WT-NW	TUA1dEY NW	TUA1dEY+TUB15 NW	TUA1dY+TUB9 NW	Pde NW	NWA:WT GA	NWBWT GA	TW:WT	TW:WT GA	NWA:OE-ARK2 GA	NWB:OE-ARK2 GA	TW:OE-ARK2	TW:OE-ARK2 GA	NWA:miRNA-ARK2 GA	NWB:miRNA-ARK2 GA	TW:miRNA-ARK2	TW:miRNA-ARK2 GA	TW 2hr	TW 8hr	TW 24hr	TW 48hr	TW 96hr	TW 336hr	WT ACC	35S::etr1-1 H20	35S::etr1-1 ACC	LMX5::etr1-1 H20	LMX5::etr1-1 ACC	WT-TW	TUA1dEY TW	TUA1dEY+TUB15 TW	TUA1dY+TUB9 TW	Pde TW	OW:WT	OW:WT GA	OW:OE-ARK2	OW:OE-ARK2 GA	OW:miRNA-ARK2	OW:miRNA-ARK2 GA	OW 2hr	OW 8hr	OW 24hr	OW 48hr	OW 96hr	OW 336hr	Root CTR	Root LongCold	Root LongDrougt	Root LongHeat	Root LongSalt	Root ShortCold	Root ShortDrougt	Root ShortHeat	Root ShortSalt	Ptr root	Leaf CTR	Leaf LongCold	Leaf LongDrougt	Leaf LongHeat	Leaf LongSalt	Leaf ShortCold	Leaf ShortDrougt	Leaf ShortHeat	Leaf ShortSalt	Ptr leaf	Stem CTR	Stem LongCold	Stem LongDrougt	Stem LongHeat	Stem LongSalt	Stem ShortCold	Stem ShortDrougt	Stem ShortHeat	Stem ShortSalt	Ptr shoot	Ptr xylem	Ptr phloem	Ptr fiber	Ptr vessel	Ptr fiber vessel ray
AT3G14460			LRR and NB-ARC domains-contain...		Potri.003G200800 [exp]	0	1
AT5G57620	MYB	ATMYB36	myb domain protein 36 (.1)		Potri.018G095900 [exp]	3.31	0.9604
AT2G21045			Rhodanese/Cell cycle control p...		Potri.014G131300 [exp]	4.47	0.9592
AT5G60900		RLK1	receptor-like protein kinase 1...		Potri.001G228300 [exp]	8.00	0.9379
AT3G20898			unknown protein		Potri.006G053600 [exp]	8.24	0.9370
AT1G05577			Domain of unknown function (DU...		Potri.009G024900 [exp]	9.16	0.9552
AT5G22860			Serine carboxypeptidase S28 fa...		Potri.010G232300 [exp]	9.16	0.9506
AT2G37050			Leucine-rich repeat protein ki...		Potri.007G004700 [exp]	10.09	0.9553
AT5G20400			2-oxoglutarate (2OG) and Fe(II...		Potri.006G062500 [exp]	11.22	0.9461
AT5G07010		ATST2A	ARABIDOPSIS THALIANA SULFOTRAN...		Potri.001G036700 [exp]	11.40	0.9529
AT1G76490		HMGR1, HMG1, At...	3-HYDROXY-3-METHYLGLUTARYL COA...		Potri.011G145000 [exp]	12.00	0.9436	Pt-HMGR3.2

Compare expression of checked genes

Potri.003G200800 coexpression network

*The number of genes in the network is adjusted within 50 genes.
*Gene name represents symbol(s) of closest Arabidopsis gene if symbol(s) for the gene itself doesn't exist.
*Circle diameter represents the number of connection with other genes within this network.
*Color for gene name represents subnetwork based on the result of network clustering.