Plant FIBer expression Database

External link	JGI Phytozome v13 [genome browser] Popgenie AspWood
Symbol
Arabidopsis homologues Show only best Show top 10	Locus ID BLAST score/e-value TF class Alias TAIR10 short description AT3G14470 614 / 0 NB-ARC domain-containing disease resistance protein (.1) AT3G14460 477 / 7e-148 LRR and NB-ARC domains-containing disease resistance protein (.1) AT3G07040 229 / 3e-62 RPS3, RPM1 RESISTANCE TO PSEUDOMONAS SYRINGAE 3, RESISTANCE TO P. SYRINGAE PV MACULICOLA 1, NB-ARC domain-containing disease resistance protein (.1) AT3G50950 216 / 2e-58 ZAR1 HOPZ-ACTIVATED RESISTANCE 1 (.1.2) AT1G58390 215 / 1e-57 Disease resistance protein (CC-NBS-LRR class) family (.1) AT1G58848 200 / 2e-52 Disease resistance protein (CC-NBS-LRR class) family (.1), Disease resistance protein (CC-NBS-LRR class) family (.2) AT1G59218 200 / 2e-52 Disease resistance protein (CC-NBS-LRR class) family (.1), Disease resistance protein (CC-NBS-LRR class) family (.2) AT1G59620 195 / 2e-51 CW9 Disease resistance protein (CC-NBS-LRR class) family (.1) AT1G58410 196 / 3e-51 Disease resistance protein (CC-NBS-LRR class) family (.1) AT1G58602 194 / 1e-50 LRR and NB-ARC domains-containing disease resistance protein (.1.2)
Paralogs Show only best Show top 10	Gene ID BLAST score/e-value At best hit BLAST score/e-value TAIR10 short description Potri.003G201900 [exp] 979 / 0 AT3G14470 567 / 0.0 NB-ARC domain-containing disease resistance protein (.1) Potri.001G029300 [exp] 856 / 0 AT3G14470 676 / 0.0 NB-ARC domain-containing disease resistance protein (.1) Potri.005G007001 [exp] 812 / 0 AT3G14470 647 / 0.0 NB-ARC domain-containing disease resistance protein (.1) Potri.003G200800 [exp] 803 / 0 AT3G14460 509 / 7e-157 LRR and NB-ARC domains-containing disease resistance protein (.1) Potri.T126706 [exp] 788 / 0 AT3G14470 565 / 0.0 NB-ARC domain-containing disease resistance protein (.1) Potri.T126306 [exp] 784 / 0 AT3G14470 585 / 0.0 NB-ARC domain-containing disease resistance protein (.1) Potri.003G055600 [exp] 777 / 0 AT3G14470 615 / 0.0 NB-ARC domain-containing disease resistance protein (.1) Potri.007G137101 [exp] 751 / 0 AT3G14470 616 / 0.0 NB-ARC domain-containing disease resistance protein (.1) Potri.T126806 [exp] 733 / 0 AT3G14470 587 / 0.0 NB-ARC domain-containing disease resistance protein (.1)
Flax homologues Show only best Show top 10	Locus ID BLAST score/e-value At best hit BLAST score/e-value TAIR10 short description Lus10039540 [exp] 759 / 0 AT3G14470 727 / 0.0 NB-ARC domain-containing disease resistance protein (.1) Lus10024173 [exp] 706 / 0 AT3G14460 681 / 0.0 LRR and NB-ARC domains-containing disease resistance protein (.1) Lus10007261 [exp] 679 / 0 AT3G14460 654 / 0.0 LRR and NB-ARC domains-containing disease resistance protein (.1) Lus10039509 [exp] 675 / 0 AT3G14460 613 / 0.0 LRR and NB-ARC domains-containing disease resistance protein (.1) Lus10005321 [exp] 529 / 2e-167 AT3G14460 607 / 0.0 LRR and NB-ARC domains-containing disease resistance protein (.1) Lus10026109 [exp] 514 / 2e-162 AT3G14470 598 / 0.0 NB-ARC domain-containing disease resistance protein (.1) Lus10026132 [exp] 516 / 3e-161 AT3G14460 594 / 0.0 LRR and NB-ARC domains-containing disease resistance protein (.1) Lus10002736 [exp] 380 / 6e-122 AT3G14470 317 / 1e-98 NB-ARC domain-containing disease resistance protein (.1) Lus10016316 [exp] 373 / 4e-111 AT3G14470 494 / 6e-156 NB-ARC domain-containing disease resistance protein (.1) Lus10005218 [exp] 342 / 5e-100 AT3G14470 379 / 2e-113 NB-ARC domain-containing disease resistance protein (.1)
PFAM info	Clan ID Clan name Pfam ID Pfam name Pfam description CL0023 [poplar] [flax] P-loop_NTPase PF00931 [poplar] [flax] NB-ARC NB-ARC domain
Representative CDS sequence Show only first row Show all	>Potri.003G201800.4 pacid=42785777 polypeptide=Potri.003G201800.4.p locus=Potri.003G201800 ID=Potri.003G201800.4.v4.1 annot-version=v4.1 ATGGCTCTCGCATTGATTGGAGAATCAATTCTTGCTGCAGTCCTTGAAGTTTTGATGGAGAGGATAGTTTCTCCTGCGGTTAGGGACTTCTTCAAGAGCC AAAAAATCGATGATGAAGAATTGAAGAAGTTGAAGGCAAGGATGAGGTCTGTTAGTAAACTGCTCAATGATGCAGAGGAGAAGCAGATTACTGATGCAGC TGTGAAAGAGTGGCTTGATGAGCTTAAGGATGCTGTCTATCAAGCTGATGACTTCTTGGATGAGATTGCTTATAAAGCTTTGCGGTTGAAGTTGGAAGGT GAATCTCGAAGTCAGACCTGCACGGATCAGCTTCGAAGCTTTCTCGCTTCTCTTAATCCATGTAGAAAGGGGGTGAGAGAGGTGCAAATAGAGTTGGCAA AGATCCTTCGAAGTTTAGAAGAGTTAGTGGGACAAAAGGATGTTCTTGGTCTGATAGAGCGCATTGGGGAGAAACCATCGTCGCGGATAACACCAACTTC TTCTCTGGTAGATGAATCTGGAGTTTATGGAAGGGATGCTGAAAAAGAAGCCATAATGAAGTTGCTGCTAGCAGATGATACAAAAGGCAGGCACCTAGAT GTGATTTCGATAGTGGGTATGGGAGGGGTTGGTAAAACCACCCTTGCTCAGCTTCTCTATAAAGAAATTGTTGTTTCCAACGACAGAAGCCAGAAGAGCT CGTTTGATCTCAAAGCCTGGGTTTATGTTTCGGAAGAATTCGATGTTCTCAAAGTAACAAAAGATATTCTGAAGGGGGTTGGCTCGATGAATTGTGACAA CATGACTGAAGATCAACTCCATTGCGAGCTGGAGAAGAAATTGTCAGGGAACAAACTATTGCTTGTTCTAGATGATGTTTGGAGCGATAACCAATCTCAG TGGGAATTTTTACTGAAACCTTTCATGTCCGTGAGACAGGGAATTAAAATTATCGTTACAACGCGCAATGAAAACGTAGCATCAATCATTTCTTCTGTTT CAACTCATCATATAAAGAAGTTATCTGACGATGATTGTTGGTTGGTGTTGTCAAAACATGCATTTGATGGTGGAAATCTCAGTGCCCATCCAGAGTTGGA ATTAATTGGTAGACAGATAGCGAGGAAGTGCAACGGCCTACCTTTGGCTGCAAAAACACTTGGGAGTCTCCTGTGCTCCAATAGAGTTAAGAAGGAGTGG ATGAAGATATTAAAGAGTAATTTTTGGGAATTGCCAAATGACAACATTCTGTCACCTCTACGGTTGAGTTATCATCATCTCCCATCTCATTTAAAACGAT GCTTTTCATACTGCGCTATAATTCCGAAGGGTTATAAATTCACAAGGGAGGAGATAGTCCTTTTATGGATGGCAGAGGGCTTTTTGGTGGAACCCAGAAG AAATAATGAGATGGAAGAAATAGGCTATGAGTACTTCAATGAGCTTGTGGCAAGGTCATTTTTTCAGCAATCAAGTCCTAGTTCATCATTATTCGTAATG CATGACCTCATTAATGATTTAGCTAGATTTGCATCCGGAGATTTTTGCTTCAGGCTAGAAGGTGATGATTCAAGCAAGACTACTGAAAGGACTCGCCATT TATCATACAGAGTAGCAAAAGATGACTCTTATCAGACATTCAAGGCAATCAAGAACCCCCAATTGCTGCGCACCTTGCTATGTCCGAGTGGTTGGCCTAG ACACATGATACAACAAGTTGAGGTAATATGTAATTTATTGCCTGCACTCAAGTGCCTCAGAGTGCTATCATTGCACCCCTTTCATGATATATCTGTGTTG CCTAATTCAATTTGCAACTTGAAGCATTTACGGTATCTTGATCTCTCTCACACAAAGATTACAAGGCTCCCTGAATCAATGTGCAGTCTGTATAATTTGG AAATTTTGAACTTGCACTTTTGTGTTAAGCTTGTTGAGTTGCCAGTTAACATGAGAAGCTTAATCAACTTGCGTCATCTTGATCTTCAACACACAAAATT GCCAGAGATGCCACTGCAAATGGGTAAACTAACAAAGCTTCGAAAATTAACTGATTTCTTTATCGGAAAACAAAGTGGCTCTAACATTAAAGAGTTGGGA AAGCTTCAACATCTATCTGGTGATCTTTCTATTTGGAATCTTCAAAATGTCACAGATGCTCGAGATTCTTTTGAAGCGAATTTGAAGGGTAAAGAGCATC TTGAGAAGTTGGAGTTAGTATGGGATTGTGATATGGATAATCCACTCGTCCATGAAAGGGTACTTGAGCAACTTCAACCTCCTGTGAATGTCAAAATTCT CTCCATTATTGGGTATGGAGGTACAAGATTTCCAGATTGGGTTGGGAACTCCTCTCTTCCTCTCCTCCAAGAGCTTTACATCAGAAGCTGCCCCAACCTG AAGAAGGCCCTCTTTACTCACTTCCCTTCTTTAACCAAACTTGATATCAGGGCATGTGAGCAGTTTGAGATCGAGTTTTTCCCATTAGAGTTGTTCCCTA AATTAGAATCTCTTACTATTGGTAGTTGTCCTAATTTAGTATCTTTCAGCAAAGGAATACCCCTTGCCCCAAATTTGAAAGAGTTTCAGTTATGGAGTTG TTCAAATTTGAAGTCATTGCCTGAGAATATGCATACACTTCTACCTTCCCTTGAGAAATTGTCCATATTTCATTGTCCGAAACTCGAGTCATTTCCAGTA GGGGGTTTGCCCTCCAAACTTAAAGGACTTGCTATTTGGGGTTGCGACAAACTCATTGCAGGCCGCGCACAATGGGATTTGCAATCACTCCATGTTCTTT CAAGATTTTCAATTGCAGACAATGATGTTTTGGAGTGCTTCCCTGAGGAGACGCTACTGCCCTCAAGCCTTACCCGTCTTGAAATCAGGACACATAAAAA TCTGAAATCTCTTGACTACAAGGGACTTCAACACCTCACCTCTCTTAGAGAGTTGATAATTATGAACTGCATGGAGGTTTCCATGCCAGAAGAGGGGCTG CCCCCCTCCATTTCTTCTCTAACTATCTGGCAATGTCCTTTGCTGGAAAAGAAGTGTGAAGGGGAGCTGAAGTTCCCAAAATACATCAGAGATCCAGAAT ATATGACATCAGGAAGAAAATCAATTTAA
AA sequence Show only first row Show all	>Potri.003G201800.4 pacid=42785777 polypeptide=Potri.003G201800.4.p locus=Potri.003G201800 ID=Potri.003G201800.4.v4.1 annot-version=v4.1 MALALIGESILAAVLEVLMERIVSPAVRDFFKSQKIDDEELKKLKARMRSVSKLLNDAEEKQITDAAVKEWLDELKDAVYQADDFLDEIAYKALRLKLEG ESRSQTCTDQLRSFLASLNPCRKGVREVQIELAKILRSLEELVGQKDVLGLIERIGEKPSSRITPTSSLVDESGVYGRDAEKEAIMKLLLADDTKGRHLD VISIVGMGGVGKTTLAQLLYKEIVVSNDRSQKSSFDLKAWVYVSEEFDVLKVTKDILKGVGSMNCDNMTEDQLHCELEKKLSGNKLLLVLDDVWSDNQSQ WEFLLKPFMSVRQGIKIIVTTRNENVASIISSVSTHHIKKLSDDDCWLVLSKHAFDGGNLSAHPELELIGRQIARKCNGLPLAAKTLGSLLCSNRVKKEW MKILKSNFWELPNDNILSPLRLSYHHLPSHLKRCFSYCAIIPKGYKFTREEIVLLWMAEGFLVEPRRNNEMEEIGYEYFNELVARSFFQQSSPSSSLFVM HDLINDLARFASGDFCFRLEGDDSSKTTERTRHLSYRVAKDDSYQTFKAIKNPQLLRTLLCPSGWPRHMIQQVEVICNLLPALKCLRVLSLHPFHDISVL PNSICNLKHLRYLDLSHTKITRLPESMCSLYNLEILNLHFCVKLVELPVNMRSLINLRHLDLQHTKLPEMPLQMGKLTKLRKLTDFFIGKQSGSNIKELG KLQHLSGDLSIWNLQNVTDARDSFEANLKGKEHLEKLELVWDCDMDNPLVHERVLEQLQPPVNVKILSIIGYGGTRFPDWVGNSSLPLLQELYIRSCPNL KKALFTHFPSLTKLDIRACEQFEIEFFPLELFPKLESLTIGSCPNLVSFSKGIPLAPNLKEFQLWSCSNLKSLPENMHTLLPSLEKLSIFHCPKLESFPV GGLPSKLKGLAIWGCDKLIAGRAQWDLQSLHVLSRFSIADNDVLECFPEETLLPSSLTRLEIRTHKNLKSLDYKGLQHLTSLRELIIMNCMEVSMPEEGL PPSISSLTIWQCPLLEKKCEGELKFPKYIRDPEYMTSGRKSI

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DESeq2's median of ratios [POPLAR]

Mapped by: StringTie Salmon Order by: Tissue Experiment Show only core collection Show again Show schematic diagram

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Coexpressed genes

Compare expression of checked genes Schematic diagram [FLAX] Schematic diagram [POPLAR]

*If you select 4 or less genes and then press "compare expression", expression will be shown as a graph. If you select more than 4 genes, expresion will be shown as a heat map.
*Color represents relative expression level among samples for each gene.

At best	At TF class	At alias	At description		Locus	MR	r	Symbol	NWA:WT	NWB:WT	NWA:OE-ARK2	NWB:OE-ARK2	NWA:miRNA-ARK2	NWB:miRNA-ARK2	NW 0hr	WT H20	WT-NW	TUA1dEY NW	TUA1dEY+TUB15 NW	TUA1dY+TUB9 NW	Pde NW	NWA:WT GA	NWBWT GA	TW:WT	TW:WT GA	NWA:OE-ARK2 GA	NWB:OE-ARK2 GA	TW:OE-ARK2	TW:OE-ARK2 GA	NWA:miRNA-ARK2 GA	NWB:miRNA-ARK2 GA	TW:miRNA-ARK2	TW:miRNA-ARK2 GA	TW 2hr	TW 8hr	TW 24hr	TW 48hr	TW 96hr	TW 336hr	WT ACC	35S::etr1-1 H20	35S::etr1-1 ACC	LMX5::etr1-1 H20	LMX5::etr1-1 ACC	WT-TW	TUA1dEY TW	TUA1dEY+TUB15 TW	TUA1dY+TUB9 TW	Pde TW	OW:WT	OW:WT GA	OW:OE-ARK2	OW:OE-ARK2 GA	OW:miRNA-ARK2	OW:miRNA-ARK2 GA	OW 2hr	OW 8hr	OW 24hr	OW 48hr	OW 96hr	OW 336hr	Root CTR	Root LongCold	Root LongDrougt	Root LongHeat	Root LongSalt	Root ShortCold	Root ShortDrougt	Root ShortHeat	Root ShortSalt	Ptr root	Leaf CTR	Leaf LongCold	Leaf LongDrougt	Leaf LongHeat	Leaf LongSalt	Leaf ShortCold	Leaf ShortDrougt	Leaf ShortHeat	Leaf ShortSalt	Ptr leaf	Stem CTR	Stem LongCold	Stem LongDrougt	Stem LongHeat	Stem LongSalt	Stem ShortCold	Stem ShortDrougt	Stem ShortHeat	Stem ShortSalt	Ptr shoot	Ptr xylem	Ptr phloem	Ptr fiber	Ptr vessel	Ptr fiber vessel ray
AT3G14470			NB-ARC domain-containing disea...		Potri.003G201800 [exp]	0	1
AT5G63380			AMP-dependent synthetase and l...		Potri.015G092300 [exp]	20.39	0.9188
AT2G45510		CYP704A2	"cytochrome P450, family 704, ...		Potri.014G072100 [exp]	20.49	0.9246
AT3G19640		MRS2-3, MGT4	magnesium transporter 4 (.1)		Potri.001G291866 [exp]	26.92	0.9244
AT1G51120	AP2_ERF		AP2/B3 transcription factor fa...		Potri.006G186301 [exp]	27.87	0.9256
AT5G36930			Disease resistance protein (TI...		Potri.019G001602 [exp]	33.77	0.9195
AT5G35400			Pseudouridine synthase family ...		Potri.018G147400 [exp]	35.83	0.8704
AT3G14470			NB-ARC domain-containing disea...		Potri.018G135800 [exp]	38.61	0.8706
AT1G22430			GroES-like zinc-binding dehydr...		Potri.018G142750 [exp]	47.72	0.9037
AT3G53480		PIS1, ABCG37, P...	polar auxin transport inhibito...		Potri.008G098850 [exp]	50.19	0.9156
AT5G38280		PR5K	PR5-like receptor kinase (.1)		Potri.007G140800 [exp]	50.19	0.9162

Compare expression of checked genes

Potri.003G201800 coexpression network

*The number of genes in the network is adjusted within 50 genes.
*Gene name represents symbol(s) of closest Arabidopsis gene if symbol(s) for the gene itself doesn't exist.
*Circle diameter represents the number of connection with other genes within this network.
*Color for gene name represents subnetwork based on the result of network clustering.