Plant FIBer expression Database

External link	JGI Phytozome v13 [genome browser] Popgenie AspWood
Symbol
Arabidopsis homologues Show only best Show top 10	Locus ID BLAST score/e-value TF class Alias TAIR10 short description AT1G50420 568 / 0 GRAS SCL-3, SCL3 scarecrow-like 3 (.1) AT5G48150 215 / 6e-64 GRAS PAT1 phytochrome a signal transduction 1, GRAS family transcription factor (.1.2) AT2G04890 210 / 6e-63 GRAS SCL21 SCARECROW-like 21 (.1) AT1G50600 206 / 1e-59 GRAS SCL5 scarecrow-like 5 (.1) AT1G21450 197 / 1e-56 GRAS SCL1 SCARECROW-like 1 (.1) AT4G17230 159 / 7e-43 GRAS SCL13 SCARECROW-like 13 (.1) AT5G59450 145 / 2e-37 GRAS SCL11 GRAS family transcription factor (.1) AT3G54220 142 / 3e-36 GRAS SGR1, SCR SHOOT GRAVITROPISM 1, SCARECROW, GRAS family transcription factor (.1) AT1G66350 136 / 7e-35 GRAS RGL1 RGA-like 1 (.1) AT3G03450 132 / 2e-33 GRAS RGL2 RGA-like 2 (.1)
Paralogs Show only best Show top 10	Gene ID BLAST score/e-value At best hit BLAST score/e-value TAIR10 short description Potri.001G023500 [exp] 820 / 0 AT1G50420 600 / 0.0 scarecrow-like 3 (.1) Potri.009G048700 [exp] 641 / 0 AT1G50420 682 / 0.0 scarecrow-like 3 (.1) Potri.004G208700 [exp] 302 / 2e-98 AT1G50420 303 / 7e-99 scarecrow-like 3 (.1) Potri.014G164400 [exp] 221 / 8e-66 AT5G48150 716 / 0.0 phytochrome a signal transduction 1, GRAS family transcription factor (.1.2) Potri.001G361700 [exp] 213 / 1e-62 AT1G50600 637 / 0.0 scarecrow-like 5 (.1) Potri.006G016200 [exp] 196 / 2e-56 AT4G17230 641 / 0.0 SCARECROW-like 13 (.1) Potri.006G114200 [exp] 199 / 1e-55 AT3G54220 639 / 0.0 SHOOT GRAVITROPISM 1, SCARECROW, GRAS family transcription factor (.1) Potri.016G009700 [exp] 188 / 2e-53 AT4G17230 675 / 0.0 SCARECROW-like 13 (.1) Potri.005G186500 [exp] 185 / 4e-52 AT1G21450 685 / 0.0 SCARECROW-like 1 (.1)
Flax homologues Show only best Show top 10	Locus ID BLAST score/e-value At best hit BLAST score/e-value TAIR10 short description Lus10039562 [exp] 671 / 0 AT1G50420 579 / 0.0 scarecrow-like 3 (.1) Lus10024177 [exp] 668 / 0 AT1G50420 582 / 0.0 scarecrow-like 3 (.1) Lus10019773 [exp] 615 / 0 AT1G50420 543 / 0.0 scarecrow-like 3 (.1) Lus10009717 [exp] 597 / 0 AT1G50420 614 / 0.0 scarecrow-like 3 (.1) Lus10022418 [exp] 569 / 0 AT1G50420 592 / 0.0 scarecrow-like 3 (.1) Lus10005078 [exp] 266 / 4e-84 AT1G50420 273 / 3e-87 scarecrow-like 3 (.1) Lus10016596 [exp] 228 / 2e-68 AT5G48150 624 / 0.0 phytochrome a signal transduction 1, GRAS family transcription factor (.1.2) Lus10012323 [exp] 207 / 2e-60 AT5G48150 659 / 0.0 phytochrome a signal transduction 1, GRAS family transcription factor (.1.2) Lus10006369 [exp] 192 / 2e-55 AT5G48150 633 / 0.0 phytochrome a signal transduction 1, GRAS family transcription factor (.1.2) Lus10016496 [exp] 194 / 2e-54 AT3G54220 663 / 0.0 SHOOT GRAVITROPISM 1, SCARECROW, GRAS family transcription factor (.1)
PFAM info	Clan ID Clan name Pfam ID Pfam name Pfam description CL0063 [poplar] [flax] NADP_Rossmann PF03514 [poplar] [flax] GRAS GRAS domain family
Representative CDS sequence Show only first row Show all	>Potri.003G202100.5 pacid=42785177 polypeptide=Potri.003G202100.5.p locus=Potri.003G202100 ID=Potri.003G202100.5.v4.1 annot-version=v4.1 ATGGTAGGAATGGTTCAAGAAGAGGGATCATCATCTGTAACTTCACCTCACCTGTTCTTTCCATGGATGCAACTGTCGCCAGGGATAGGATCACCATACC CTTGGTTGAGGGAACTGAAATCTGAAGAGAGGGGTTTGTGTCTGATCCATCTTCTTCTTGCCTGCGCTAACCATGTAGCGGTTGGTAGTGTTGAGAATGC AAATATTAGCCTTGAGCACATCTCCCATCTTGCCTCTCCTGATGGCGATACGATGCAGCGGATTGCTGCTTACTTCACTGCAGCACTTGCTGATCGCATT CTTAAAGGATGGCCTGGTCTGCACAAAGCTCTCAATCCAAAACAAGTATCTTTGATATCTGAAGAAATTCTTGTTCAAAGATTATTCTTTGAGCTCTGTC CCTTTTTAAAGCTTTCATACGTGATCACAAATGAGGCCATTATAGAATCCATGGAAGGGGAGAAGATGGTTCATATCATCGATCTCAATTCTTCTGAGCC TGCCCAGTGGATCAATCTTCTTCAAACATTAAGCGCACGGCCAGAAGGACCACCTCATTTGAGAATAACAGGTATTCATGAGAAGAAAGAGGTCTTAGGG CAAATGGCTCTTCGGCTGACTGAAGAAGCTGAAAAGCTAGACATCCCATTTCAGTTCAATCCTATTGTGAGCAAACTAGAGAATCTTGACCTTGGAAACT TGCGGGTTAAGACTGGAGAAGCTCTTGCTGTCAGTTCTGTACTTCAGCTGCATGCTCTCCTGGCCATGGATGATGAGATGCATAAAAGGAACTCTCCATC AGGATCTAAGAATCCAAGCTCTAACCATTTTCAGAGAGTCTTACGGATGAACCAAAACCGACATACTCTAGGTGAATGGCTTGAGAAAGATTTGGTCAAC GTCTATAGCTCTAGTCCTGACTCAGCATTATCTCCTCTATCTCTTTCTGCTTCACCAAAGATGAGCAGCTTTCTAAATGCACTTAGGAGTCTCTCACCGA AATTGTTGGTTATAACTGAGCAGGAATCAAATCATAACGAGTTTACTTTAATGGAGAGGGTCACAAAAGCTTTGAATTTTTATGCTGCACTATTTGATTG CTTGGAGTCTACTGTATCGAGAGCATCATTAGAGCGGCACAAGGTTGAGAAGATGCTATTTGGGGAGGAAATTAAGAACATCATCGCTTGTGAGGGAACT GAGAGAAAGGAGAGGCATGAGAAGTTGGAAAAATGGATCCTAAGGCTCGAGTTAGCTGGGTTTGGGAGCATTCCTCTGAGCTACCATGGTAGGCTGCAAG CAAACAGATTATTGCAAAGCTATGGCTATGATGGATACAAAATCAAAGAAGAGAATGGATGCTTACTTATATGCTGGCAGGATAGACCACTATTTTCTGT GTCAGCTTGGAGATTTAAAAGGTACGATTGA
AA sequence Show only first row Show all	>Potri.003G202100.5 pacid=42785177 polypeptide=Potri.003G202100.5.p locus=Potri.003G202100 ID=Potri.003G202100.5.v4.1 annot-version=v4.1 MVGMVQEEGSSSVTSPHLFFPWMQLSPGIGSPYPWLRELKSEERGLCLIHLLLACANHVAVGSVENANISLEHISHLASPDGDTMQRIAAYFTAALADRI LKGWPGLHKALNPKQVSLISEEILVQRLFFELCPFLKLSYVITNEAIIESMEGEKMVHIIDLNSSEPAQWINLLQTLSARPEGPPHLRITGIHEKKEVLG QMALRLTEEAEKLDIPFQFNPIVSKLENLDLGNLRVKTGEALAVSSVLQLHALLAMDDEMHKRNSPSGSKNPSSNHFQRVLRMNQNRHTLGEWLEKDLVN VYSSSPDSALSPLSLSASPKMSSFLNALRSLSPKLLVITEQESNHNEFTLMERVTKALNFYAALFDCLESTVSRASLERHKVEKMLFGEEIKNIIACEGT ERKERHEKLEKWILRLELAGFGSIPLSYHGRLQANRLLQSYGYDGYKIKEENGCLLICWQDRPLFSVSAWRFKRYD

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DESeq2's median of ratios [POPLAR]

Mapped by: StringTie Salmon Order by: Tissue Experiment Show only core collection Show again Show schematic diagram

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Coexpressed genes

Compare expression of checked genes Schematic diagram [FLAX] Schematic diagram [POPLAR]

*If you select 4 or less genes and then press "compare expression", expression will be shown as a graph. If you select more than 4 genes, expresion will be shown as a heat map.
*Color represents relative expression level among samples for each gene.

At best	At TF class	At alias	At description		Locus	MR	r	Symbol	NWA:WT	NWB:WT	NWA:OE-ARK2	NWB:OE-ARK2	NWA:miRNA-ARK2	NWB:miRNA-ARK2	NW 0hr	WT H20	WT-NW	TUA1dEY NW	TUA1dEY+TUB15 NW	TUA1dY+TUB9 NW	Pde NW	NWA:WT GA	NWBWT GA	TW:WT	TW:WT GA	NWA:OE-ARK2 GA	NWB:OE-ARK2 GA	TW:OE-ARK2	TW:OE-ARK2 GA	NWA:miRNA-ARK2 GA	NWB:miRNA-ARK2 GA	TW:miRNA-ARK2	TW:miRNA-ARK2 GA	TW 2hr	TW 8hr	TW 24hr	TW 48hr	TW 96hr	TW 336hr	WT ACC	35S::etr1-1 H20	35S::etr1-1 ACC	LMX5::etr1-1 H20	LMX5::etr1-1 ACC	WT-TW	TUA1dEY TW	TUA1dEY+TUB15 TW	TUA1dY+TUB9 TW	Pde TW	OW:WT	OW:WT GA	OW:OE-ARK2	OW:OE-ARK2 GA	OW:miRNA-ARK2	OW:miRNA-ARK2 GA	OW 2hr	OW 8hr	OW 24hr	OW 48hr	OW 96hr	OW 336hr	Root CTR	Root LongCold	Root LongDrougt	Root LongHeat	Root LongSalt	Root ShortCold	Root ShortDrougt	Root ShortHeat	Root ShortSalt	Ptr root	Leaf CTR	Leaf LongCold	Leaf LongDrougt	Leaf LongHeat	Leaf LongSalt	Leaf ShortCold	Leaf ShortDrougt	Leaf ShortHeat	Leaf ShortSalt	Ptr leaf	Stem CTR	Stem LongCold	Stem LongDrougt	Stem LongHeat	Stem LongSalt	Stem ShortCold	Stem ShortDrougt	Stem ShortHeat	Stem ShortSalt	Ptr shoot	Ptr xylem	Ptr phloem	Ptr fiber	Ptr vessel	Ptr fiber vessel ray
AT1G50420	GRAS	SCL-3, SCL3	scarecrow-like 3 (.1)		Potri.003G202100 [exp]	0	1
AT2G02820	MYB	ATMYB88	myb domain protein 88 (.1.2)		Potri.010G093000 [exp]	5.00	0.8449	MYB124.2,MYB196
AT1G72830	CCAAT	NF-YA3, ATHAP2C...	"nuclear factor Y, subunit A3"...		Potri.018G064700 [exp]	5.19	0.8150
AT5G10970	C2H2ZnF		C2H2 and C2HC zinc fingers sup...		Potri.001G047500 [exp]	5.65	0.7873
AT4G23980	ARF	ARF9	auxin response factor 9 (.1.2)		Potri.001G088600 [exp]	9.69	0.8238
AT1G72830	CCAAT	NF-YA3, ATHAP2C...	"nuclear factor Y, subunit A3"...		Potri.006G145100 [exp]	19.28	0.7960	HAP2.6
AT4G23980	ARF	ARF9	auxin response factor 9 (.1.2)		Potri.003G142100 [exp]	19.33	0.7595
AT1G78060			Glycosyl hydrolase family prot...		Potri.005G168400 [exp]	22.91	0.7945
AT4G17570	GATA	GATA26	GATA transcription factor 26 (...		Potri.003G082800 [exp]	23.45	0.7829
AT1G61310			LRR and NB-ARC domains-contain...		Potri.001G427670 [exp]	25.84	0.8056
AT5G12840	CCAAT	NF-YA1, ATHAP2A...	"nuclear factor Y, subunit A1"...		Potri.009G060600 [exp]	28.80	0.7205

Compare expression of checked genes

Potri.003G202100 coexpression network

*The number of genes in the network is adjusted within 50 genes.
*Gene name represents symbol(s) of closest Arabidopsis gene if symbol(s) for the gene itself doesn't exist.
*Circle diameter represents the number of connection with other genes within this network.
*Color for gene name represents subnetwork based on the result of network clustering.