Plant FIBer expression Database

External link	JGI Phytozome v13 [genome browser] Popgenie AspWood
Symbol	RAP23
Arabidopsis homologues Show only best Show top 10	Locus ID BLAST score/e-value TF class Alias TAIR10 short description AT1G51190 635 / 0 AP2_ERF PLT2 PLETHORA 2, Integrase-type DNA-binding superfamily protein (.1) AT3G20840 624 / 0 AP2_ERF PLT1 PLETHORA 1, Integrase-type DNA-binding superfamily protein (.1) AT5G17430 372 / 1e-122 AP2_ERF BBM BABY BOOM, Integrase-type DNA-binding superfamily protein (.1) AT5G57390 366 / 1e-120 AP2_ERF PLT5, EMK, CHO1, AIL5 PLETHORA 5, EMBRYOMAKER, CHOTTO 1, AINTEGUMENTA-like 5 (.1) AT5G10510 344 / 1e-111 AP2_ERF PLT3, AIL6 PLETHORA 3, AINTEGUMENTA-like 6 (.1.2.3) AT1G72570 338 / 2e-111 AP2_ERF Integrase-type DNA-binding superfamily protein (.1) AT5G65510 339 / 1e-110 AP2_ERF PLT7, AIL7 PLETHORA 7, AINTEGUMENTA-like 7 (.1) AT4G37750 333 / 1e-107 AP2_ERF DRG, CKC1, ANT DRAGON, COMPLEMENTING A PROTEIN KINASE C MUTANT 1, AINTEGUMENTA, Integrase-type DNA-binding superfamily protein (.1) AT3G54320 238 / 1e-72 AP2_ERF ATWRI1, ASML1, WRI1 WRINKLED 1, WRINKLED, ACTIVATOR OF SPO\(MIN\)::LUC1, Integrase-type DNA-binding superfamily protein (.1.2.3) AT1G16060 221 / 5e-67 AP2_ERF ADAP ARIA-interacting double AP2 domain protein (.1.2)
Paralogs Show only best Show top 10	Gene ID BLAST score/e-value At best hit BLAST score/e-value TAIR10 short description Potri.001G018400 [exp] 862 / 0 AT1G51190 639 / 0.0 PLETHORA 2, Integrase-type DNA-binding superfamily protein (.1) Potri.008G076400 [exp] 398 / 6e-131 AT5G17430 405 / 4e-133 BABY BOOM, Integrase-type DNA-binding superfamily protein (.1) Potri.010G181000 [exp] 393 / 8e-129 AT5G17430 399 / 2e-130 BABY BOOM, Integrase-type DNA-binding superfamily protein (.1) Potri.006G167700 [exp] 376 / 2e-124 AT5G57390 432 / 2e-146 PLETHORA 5, EMBRYOMAKER, CHOTTO 1, AINTEGUMENTA-like 5 (.1) Potri.018G091600 [exp] 375 / 8e-124 AT5G57390 422 / 9e-142 PLETHORA 5, EMBRYOMAKER, CHOTTO 1, AINTEGUMENTA-like 5 (.1) Potri.001G169500 [exp] 345 / 3e-112 AT1G72570 389 / 2e-131 Integrase-type DNA-binding superfamily protein (.1) Potri.007G011600 [exp] 342 / 1e-111 AT5G10510 510 / 5e-177 PLETHORA 3, AINTEGUMENTA-like 6 (.1.2.3) Potri.002G114800 [exp] 343 / 2e-110 AT4G37750 459 / 5e-155 DRAGON, COMPLEMENTING A PROTEIN KINASE C MUTANT 1, AINTEGUMENTA, Integrase-type DNA-binding superfamily protein (.1) Potri.014G012200 [exp] 343 / 7e-110 AT4G37750 405 / 8e-134 DRAGON, COMPLEMENTING A PROTEIN KINASE C MUTANT 1, AINTEGUMENTA, Integrase-type DNA-binding superfamily protein (.1)
Flax homologues Show only best Show top 10	Locus ID BLAST score/e-value At best hit BLAST score/e-value TAIR10 short description Lus10031260 [exp] 627 / 0 AT1G51190 667 / 0.0 PLETHORA 2, Integrase-type DNA-binding superfamily protein (.1) Lus10031831 [exp] 509 / 2e-177 AT3G20840 580 / 0.0 PLETHORA 1, Integrase-type DNA-binding superfamily protein (.1) Lus10037670 [exp] 331 / 2e-109 AT1G72570 355 / 1e-120 Integrase-type DNA-binding superfamily protein (.1) Lus10007719 [exp] 331 / 1e-106 AT4G37750 429 / 1e-144 DRAGON, COMPLEMENTING A PROTEIN KINASE C MUTANT 1, AINTEGUMENTA, Integrase-type DNA-binding superfamily protein (.1) Lus10018655 [exp] 330 / 3e-106 AT4G37750 430 / 9e-145 DRAGON, COMPLEMENTING A PROTEIN KINASE C MUTANT 1, AINTEGUMENTA, Integrase-type DNA-binding superfamily protein (.1) Lus10012728 [exp] 327 / 2e-105 AT5G10510 495 / 1e-170 PLETHORA 3, AINTEGUMENTA-like 6 (.1.2.3) Lus10002657 [exp] 300 / 2e-95 AT5G10510 467 / 5e-160 PLETHORA 3, AINTEGUMENTA-like 6 (.1.2.3) Lus10036719 [exp] 253 / 3e-78 AT3G54320 288 / 3e-93 WRINKLED 1, WRINKLED, ACTIVATOR OF SPO\(MIN\)::LUC1, Integrase-type DNA-binding superfamily protein (.1.2.3) Lus10037209 [exp] 253 / 4e-78 AT3G54320 286 / 1e-92 WRINKLED 1, WRINKLED, ACTIVATOR OF SPO\(MIN\)::LUC1, Integrase-type DNA-binding superfamily protein (.1.2.3) Lus10013268 [exp] 241 / 3e-75 AT3G54320 275 / 3e-90 WRINKLED 1, WRINKLED, ACTIVATOR OF SPO\(MIN\)::LUC1, Integrase-type DNA-binding superfamily protein (.1.2.3)
PFAM info	Clan ID Clan name Pfam ID Pfam name Pfam description CL0081 [poplar] [flax] MBD-like PF00847 [poplar] [flax] AP2 AP2 domain
Representative CDS sequence Show only first row Show all	>Potri.003G205700.1 pacid=42786271 polypeptide=Potri.003G205700.1.p locus=Potri.003G205700 ID=Potri.003G205700.1.v4.1 annot-version=v4.1 ATGAATTCTAACAACTGGCTTTCATTTCCTCTTTCTCCTACTCATCCTTCCTTGCCTGCTCATCTACATGCATCCCACCCTCATCAATTCTCTCTAGGGT TAGTCAATGATAATATGGAAAACCCATTTCAAACTCAAGAGTGGAGTCTTCTTAACACTCATCAAGGCAACAATGAAGTGCCAAAGGTTGCAGACTTTCT TGGTGTGAGCAAATCTGAGAATCAATCAGATCTTGTAGCCTTCAATGAAATTCAAGCTAATGAATCTGACTATCTCTTTTCAAACAATAGTCTAGTACCA GTCCAAAATGCTGTTGTAGGCGCCACTAATACCTTTGAGTTTCAAGAAAATGCTAGCAATTTGCAGTCATTAACATTGTCTATGGGCAGTGCTAGTGGTA AAGGTTCTACATGTGAACCCAGTGGGGATAATAGCACTAATACTGTTGAAGCTGCTGCACCAAGAAGAACTTTGGATACATTTGGGCAAAGAACATCCAT ATATCGTGGTGTAACAAGGCATCGATGGACAGGAAGGTATGAAGCTCATTTATGGGATAATAGTTGCAGAAGAGAAGGTCAATCTAGGAAAGGAAGACAG GTCTATTTAGGTGGCTATGACAAAGAAGAAAAGGCAGCTAGGGCTTATGATCTTGCTGCACTTAAGTACTGGGGAACATCCACCACTACCAATTTTCCAA TCAGCAACTACGAGAAAGAAATAGAGGAAATGAAGCACATGACCAGGCAAGAATTTGTGGCCTCCATTAGAAGGAAGAGTAGTGGCTTCTCTAGGGGTGC ATCCATGTATCGTGGAGTTACAAGGCATCACCAGCATGGTAGATGGCAAGCAAGGATAGGCAGAGTTGCAGGAAACAAAGATCTCTACTTGGGAACTTTT AGCACTGAGGAGGAGGCTGCAGAAGCTTATGACATAGCAGCAATAAAGTTTAGAGGGCTTAATGCAGTGACTAACTTTGACATGAATCGATATGATGTGA AGAGCATTCTTGAAAGCAATACTTTGCCAATTGGAGGAGGGGCAGCCAAACGGCTAAAGGAGGCTCAAGCAATTGAATCATCACGAAAAAGAGAAGAAAT GATTGCTCTTGGCTCAAGTTTTCCATATGGATCAACTTCAAGCTCTAGCAGGCTACAAGCTTACCCTCTAATGCAGACACCATTTGAGCAACCTCAACCT TTACTTACTCTACAAAATCAAGACATTTCTCAGTACACTCAGGATTCCTCATCATTCCACCAAAATTTCCTTCAAACACAGCTTCATTTGCACCAGCAAT CTACAGGGTCTAATTTCCTGCATAACCAATCAAACCAAAACCCTCAATATTACAATAGTTATATCCAAAACAATCCAGCTTTACTTCATGGATTGTGGAA CATGGGTTCTTCATCATCTGTAATGGAGAATAATGGAAGTTCTAGTGGGAGCTATAGTACTGGAGGTTATCTGGGAAATGGGCTGGGAATGGCTTCCAAT TCAACAGGGTCTAATGCAGTAGGATCAGCCGAGGAACTTGCACTTGTCAAAGTTGATTATGATATGCCTTCTAGTGGCTATGGAAGCTGGTCTGGGGACT CAGTCCAGGGATCCAATCCAGGTGTTTTCACTATGTGGAATGAGTGA
AA sequence Show only first row Show all	>Potri.003G205700.1 pacid=42786271 polypeptide=Potri.003G205700.1.p locus=Potri.003G205700 ID=Potri.003G205700.1.v4.1 annot-version=v4.1 MNSNNWLSFPLSPTHPSLPAHLHASHPHQFSLGLVNDNMENPFQTQEWSLLNTHQGNNEVPKVADFLGVSKSENQSDLVAFNEIQANESDYLFSNNSLVP VQNAVVGATNTFEFQENASNLQSLTLSMGSASGKGSTCEPSGDNSTNTVEAAAPRRTLDTFGQRTSIYRGVTRHRWTGRYEAHLWDNSCRREGQSRKGRQ VYLGGYDKEEKAARAYDLAALKYWGTSTTTNFPISNYEKEIEEMKHMTRQEFVASIRRKSSGFSRGASMYRGVTRHHQHGRWQARIGRVAGNKDLYLGTF STEEEAAEAYDIAAIKFRGLNAVTNFDMNRYDVKSILESNTLPIGGGAAKRLKEAQAIESSRKREEMIALGSSFPYGSTSSSSRLQAYPLMQTPFEQPQP LLTLQNQDISQYTQDSSSFHQNFLQTQLHLHQQSTGSNFLHNQSNQNPQYYNSYIQNNPALLHGLWNMGSSSSVMENNGSSSGSYSTGGYLGNGLGMASN STGSNAVGSAEELALVKVDYDMPSSGYGSWSGDSVQGSNPGVFTMWNE

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DESeq2's median of ratios [POPLAR]

Mapped by: StringTie Salmon Order by: Tissue Experiment Show only core collection Show again Show schematic diagram

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Coexpressed genes

Compare expression of checked genes Schematic diagram [FLAX] Schematic diagram [POPLAR]

*If you select 4 or less genes and then press "compare expression", expression will be shown as a graph. If you select more than 4 genes, expresion will be shown as a heat map.
*Color represents relative expression level among samples for each gene.

At best	At TF class	At alias	At description		Locus	MR	r	Symbol	NWA:WT	NWB:WT	NWA:OE-ARK2	NWB:OE-ARK2	NWA:miRNA-ARK2	NWB:miRNA-ARK2	NW 0hr	WT H20	WT-NW	TUA1dEY NW	TUA1dEY+TUB15 NW	TUA1dY+TUB9 NW	Pde NW	NWA:WT GA	NWBWT GA	TW:WT	TW:WT GA	NWA:OE-ARK2 GA	NWB:OE-ARK2 GA	TW:OE-ARK2	TW:OE-ARK2 GA	NWA:miRNA-ARK2 GA	NWB:miRNA-ARK2 GA	TW:miRNA-ARK2	TW:miRNA-ARK2 GA	TW 2hr	TW 8hr	TW 24hr	TW 48hr	TW 96hr	TW 336hr	WT ACC	35S::etr1-1 H20	35S::etr1-1 ACC	LMX5::etr1-1 H20	LMX5::etr1-1 ACC	WT-TW	TUA1dEY TW	TUA1dEY+TUB15 TW	TUA1dY+TUB9 TW	Pde TW	OW:WT	OW:WT GA	OW:OE-ARK2	OW:OE-ARK2 GA	OW:miRNA-ARK2	OW:miRNA-ARK2 GA	OW 2hr	OW 8hr	OW 24hr	OW 48hr	OW 96hr	OW 336hr	Root CTR	Root LongCold	Root LongDrougt	Root LongHeat	Root LongSalt	Root ShortCold	Root ShortDrougt	Root ShortHeat	Root ShortSalt	Ptr root	Leaf CTR	Leaf LongCold	Leaf LongDrougt	Leaf LongHeat	Leaf LongSalt	Leaf ShortCold	Leaf ShortDrougt	Leaf ShortHeat	Leaf ShortSalt	Ptr leaf	Stem CTR	Stem LongCold	Stem LongDrougt	Stem LongHeat	Stem LongSalt	Stem ShortCold	Stem ShortDrougt	Stem ShortHeat	Stem ShortSalt	Ptr shoot	Ptr xylem	Ptr phloem	Ptr fiber	Ptr vessel	Ptr fiber vessel ray
AT1G51190	AP2_ERF	PLT2	PLETHORA 2, Integrase-type DNA...		Potri.003G205700 [exp]	0	1	RAP23
AT5G17430	AP2_ERF	BBM	BABY BOOM, Integrase-type DNA-...		Potri.010G181000 [exp]	1.41	0.9790
AT3G50740		UGT72E1	UDP-glucosyl transferase 72E1 ...		Potri.007G030400 [exp]	2.00	0.9717
AT3G42180			Exostosin family protein (.1.3...		Potri.018G124832 [exp]	4.58	0.9606
AT5G57620	MYB	ATMYB36	myb domain protein 36 (.1)		Potri.018G095900 [exp]	5.29	0.9649
AT1G79580	NAC	ANAC033, SMB, N...	NAC (No Apical Meristem) domai...		Potri.010G176600 [exp]	5.47	0.9640
					Potri.017G122100 [exp]	6.00	0.9612
					Potri.017G102200 [exp]	6.48	0.9480
AT4G22810	AT-hook		Predicted AT-hook DNA-binding ...		Potri.001G115200 [exp]	7.34	0.9574
AT5G17430	AP2_ERF	BBM	BABY BOOM, Integrase-type DNA-...		Potri.008G076400 [exp]	8.00	0.9599
AT1G17020		ATSRG1, SRG1	senescence-related gene 1 (.1)		Potri.009G022800 [exp]	8.48	0.9505

Compare expression of checked genes

Potri.003G205700 coexpression network

*The number of genes in the network is adjusted within 50 genes.
*Gene name represents symbol(s) of closest Arabidopsis gene if symbol(s) for the gene itself doesn't exist.
*Circle diameter represents the number of connection with other genes within this network.
*Color for gene name represents subnetwork based on the result of network clustering.